FFCP PHASE1:Hg19::chr22:22901477..22901499,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23532 | |EntrezGene=23532 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9336 | |HGNC=9336 | ||
|TSSclassifier=strong | |||
|UniProt=E7EMH2 | |UniProt=E7EMH2 | ||
|association_with_transcript=0bp_to_ENST00000420709_5end | |association_with_transcript=0bp_to_ENST00000420709_5end | ||
|cluster_id=chr22:22901477..22901499,- | |||
|coexpression_cluster_id=C93 | |||
|description=CAGE_peak_4_at_PRAME_5end | |description=CAGE_peak_4_at_PRAME_5end | ||
|id=chr22:22901477..22901499,- | |id=chr22:22901477..22901499,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002553;1.43e-10;1!CL:0000313;3.00e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,1.19e-10,1;CL:0000313,3.29e-10,1 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.00e-10;1!UBERON:0009117;1.14e-08;10!UBERON:0005564;1.14e-08;10 | |||
|ontology_enrichment_disease=DOID:14566!1.33e-31!239;DOID:162!6.06e-30!235;DOID:0050687!5.15e-20!143;DOID:0050686!2.71e-16!137;DOID:305!3.44e-13!106;DOID:8692!1.17e-12!31;DOID:1240!5.45e-11!39;DOID:2531!2.29e-10!51;DOID:0060083!2.29e-10!51;DOID:1036!1.25e-09!8;DOID:1909!2.39e-07!2;DOID:5409!9.52e-07!4 | |ontology_enrichment_disease=DOID:14566!1.33e-31!239;DOID:162!6.06e-30!235;DOID:0050687!5.15e-20!143;DOID:0050686!2.71e-16!137;DOID:305!3.44e-13!106;DOID:8692!1.17e-12!31;DOID:1240!5.45e-11!39;DOID:2531!2.29e-10!51;DOID:0060083!2.29e-10!51;DOID:1036!1.25e-09!8;DOID:1909!2.39e-07!2;DOID:5409!9.52e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:1909;4.52e-19;2!DOID:1036;4.66e-19;8!DOID:1115;2.62e-11;20!DOID:3371;1.03e-10;1!DOID:4549;1.03e-10;1!DOID:5861;1.03e-10;1!DOID:6496;1.03e-10;1!DOID:2152;3.00e-10;1!DOID:8692;1.27e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.61e-19,2;DOID:1036,4.67e-19,8;DOID:1115,2.56e-11,20;DOID:162,6.13e-11,235;DOID:3371,9.84e-11,1;DOID:4549,9.84e-11,1;DOID:5861,9.84e-11,1;DOID:6496,9.84e-11,1;DOID:14566,1.20e-10,239;DOID:2152,3.29e-10,1;DOID:8692,2.41e-07,31;DOID:0050687,3.57e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.21e-07!9 | |ontology_enrichment_uberon=UBERON:0001737!3.21e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.00e-10;1!UBERON:0004911;3.00e-10;1!UBERON:0001785;3.00e-10;1!UBERON:0002464;3.00e-10;1!UBERON:0004904;3.00e-10;1!UBERON:0001021;3.00e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.74e-10,1;UBERON:0001785,2.74e-10,1;UBERON:0002464,2.74e-10,1;UBERON:0004904,2.74e-10,1;UBERON:0001021,2.74e-10,1;UBERON:0003902,2.74e-10,1;UBERON:0005425,2.74e-10,1;UBERON:0004911,3.29e-10,1 | |||
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| ||
|short_description=p4@PRAME | |short_description=p4@PRAME | ||
}} | }} |
Latest revision as of 07:44, 19 September 2015
Short description: | p4@PRAME |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PRAME_5end |
Coexpression cluster: | C93_chronic_acute_leukemia_acantholytic_medulloblastoma_testis_papillotubular |
Association with transcript: | 0bp_to_ENST00000420709_5end |
EntrezGene: | PRAME |
HGNC: | 9336 |
UniProt: | E7EMH2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 1.19e-10 | 1 |
serous secreting cell | 3.29e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.74e-10 | 1 |
cranial nerve | 2.74e-10 | 1 |
nerve trunk | 2.74e-10 | 1 |
nerve connecting eye with brain | 2.74e-10 | 1 |
nerve | 2.74e-10 | 1 |
retinal neural layer | 2.74e-10 | 1 |
presumptive neural retina | 2.74e-10 | 1 |
epithelium of female gonad | 3.29e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.61e-19 | 2 |
chronic leukemia | 4.67e-19 | 8 |
sarcoma | 2.56e-11 | 20 |
cancer | 6.13e-11 | 235 |
chondrosarcoma | 9.84e-11 | 1 |
extraosseous chondrosarcoma | 9.84e-11 | 1 |
myxoid chondrosarcoma | 9.84e-11 | 1 |
extraskeletal myxoid chondrosarcoma | 9.84e-11 | 1 |
disease of cellular proliferation | 1.20e-10 | 239 |
ovary epithelial cancer | 3.29e-10 | 1 |
myeloid leukemia | 2.41e-07 | 31 |
cell type cancer | 3.57e-07 | 143 |