FFCP PHASE1:Hg19::chr15:78913628..78913657,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1136 | |EntrezGene=1136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1957 | |HGNC=1957 | ||
|TSSclassifier=strong | |||
|UniProt=P32297 | |UniProt=P32297 | ||
|association_with_transcript=0bp_to_ENST00000348639,NM_000743,NM_001166694_5end | |association_with_transcript=0bp_to_ENST00000348639,NM_000743,NM_001166694_5end | ||
|cluster_id=chr15:78913628..78913657,- | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_6_at_CHRNA3_5end | |description=CAGE_peak_6_at_CHRNA3_5end | ||
|id=chr15:78913628..78913657,- | |id=chr15:78913628..78913657,- | ||
|ontology_enrichment_celltype=CL:0002586!8.74e-09!3;CL:0000149!8.70e-07!4 | |ontology_enrichment_celltype=CL:0002586!8.74e-09!3;CL:0000149!8.70e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000333;3.60e-14;5!CL:0002586;9.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010122;1.64e-09;2!UBERON:0003056;5.80e-07;3 | |||
|ontology_enrichment_disease=DOID:169!1.45e-09!6 | |ontology_enrichment_disease=DOID:169!1.45e-09!6 | ||
|ontology_enrichment_disease_v019=DOID:169;5.68e-12;6!DOID:154;1.64e-09;2!DOID:4236;1.64e-09;2!DOID:171;1.52e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,5.37e-12,6;DOID:154,1.86e-09,2;DOID:4236,1.86e-09,2;DOID:171,1.47e-07,10 | |||
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|short_description=p6@CHRNA3 | |short_description=p6@CHRNA3 | ||
}} | }} |
Latest revision as of 07:14, 19 September 2015
Short description: | p6@CHRNA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CHRNA3_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000348639, NM_000743, NM_001166694_5end |
EntrezGene: | CHRNA3 |
HGNC: | 1957 |
UniProt: | P32297 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.56e-34 | 2 |
regional part of epithalamus | 1.56e-34 | 2 |
secretory circumventricular organ | 1.56e-34 | 2 |
circumventricular organ | 1.56e-34 | 2 |
epithalamus | 1.56e-34 | 2 |
gland of diencephalon | 8.04e-18 | 4 |
neuroendocrine gland | 8.04e-18 | 4 |
regional part of diencephalon | 8.04e-18 | 4 |
sympathetic nervous system | 3.37e-14 | 5 |
autonomic nervous system | 3.37e-14 | 5 |
retina | 5.08e-12 | 6 |
photoreceptor array | 5.08e-12 | 6 |
posterior segment of eyeball | 5.08e-12 | 6 |
diencephalon | 1.33e-10 | 7 |
future diencephalon | 1.33e-10 | 7 |
caudate nucleus | 1.33e-09 | 2 |
future caudate nucleus | 1.33e-09 | 2 |
peripheral nervous system | 2.65e-08 | 8 |
eye | 9.73e-08 | 21 |
visual system | 9.73e-08 | 21 |
sense organ | 7.77e-07 | 24 |
sensory system | 7.77e-07 | 24 |
entire sense organ system | 7.77e-07 | 24 |
caudate-putamen | 8.15e-07 | 3 |
dorsal striatum | 8.15e-07 | 3 |
pre-chordal neural plate | 9.42e-07 | 61 |
duodenum | 9.64e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 5.37e-12 | 6 |
mixed cell type cancer | 1.86e-09 | 2 |
carcinosarcoma | 1.86e-09 | 2 |
neuroectodermal tumor | 1.47e-07 | 10 |