FFCP PHASE1:Hg19::chr15:78913628..78913657,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:78913628..78913657,-
|short_description=p6@CHRNA3
|description=CAGE_peak_6_at_CHRNA3_5end
|association_with_transcript=0bp_to_ENST00000348639,NM_000743,NM...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1136 | |EntrezGene=1136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1957 | |HGNC=1957 | ||
|TSSclassifier=strong | |||
|UniProt=P32297 | |UniProt=P32297 | ||
|association_with_transcript=0bp_to_ENST00000348639,NM_000743,NM_001166694_5end | |||
|cluster_id=chr15:78913628..78913657,- | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_6_at_CHRNA3_5end | |||
|id=chr15:78913628..78913657,- | |||
|ontology_enrichment_celltype=CL:0002586!8.74e-09!3;CL:0000149!8.70e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000333;3.60e-14;5!CL:0002586;9.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010122;1.64e-09;2!UBERON:0003056;5.80e-07;3 | |||
|ontology_enrichment_disease=DOID:169!1.45e-09!6 | |||
|ontology_enrichment_disease_v019=DOID:169;5.68e-12;6!DOID:154;1.64e-09;2!DOID:4236;1.64e-09;2!DOID:171;1.52e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,5.37e-12,6;DOID:154,1.86e-09,2;DOID:4236,1.86e-09,2;DOID:171,1.47e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0001905!2.29e-13!2;UBERON:0002757!2.29e-13!2;UBERON:0010134!2.29e-13!2;UBERON:0002784!2.29e-13!2;UBERON:0005408!2.29e-13!2;UBERON:0001899!2.29e-13!2;UBERON:0003127!2.88e-12!2;UBERON:0000013!2.18e-11!5;UBERON:0002410!2.18e-11!5;UBERON:0000966!2.34e-11!5;UBERON:0005388!2.34e-11!5;UBERON:0001802!2.34e-11!5;UBERON:0000063!3.77e-10!97;UBERON:0000970!4.65e-10!20;UBERON:0002104!1.49e-09!21;UBERON:0007023!2.46e-09!115;UBERON:0001781!8.74e-09!3;UBERON:0001782!8.74e-09!3;UBERON:0005424!8.74e-09!3;UBERON:0000020!1.14e-08!23;UBERON:0000059!1.21e-08!11;UBERON:0007625!1.54e-08!11;UBERON:0001896!2.28e-08!3;UBERON:0005290!2.28e-08!3;UBERON:0010096!2.28e-08!3;UBERON:0001032!2.77e-08!24;UBERON:0004456!2.77e-08!24;UBERON:0000073!1.32e-07!94;UBERON:0001016!1.32e-07!94;UBERON:0000019!1.75e-07!19;UBERON:0000047!1.75e-07!19;UBERON:0004088!1.75e-07!19;UBERON:0003072!1.75e-07!19;UBERON:0003071!1.75e-07!19;UBERON:0004128!1.75e-07!19;UBERON:0003075!2.89e-07!86;UBERON:0007284!2.89e-07!86;UBERON:0001154!3.40e-07!1;UBERON:0001153!3.40e-07!1;UBERON:0003296!4.31e-07!4;UBERON:0010133!4.31e-07!4;UBERON:0002346!7.55e-07!90;UBERON:0001456!9.59e-07!21;UBERON:0001882!9.73e-07!1;UBERON:0005403!9.73e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.56e-34;2!UBERON:0002757;1.56e-34;2!UBERON:0010134;1.56e-34;2!UBERON:0005408;1.56e-34;2!UBERON:0001899;1.56e-34;2!UBERON:0003296;8.03e-18;4!UBERON:0010133;8.03e-18;4!UBERON:0002784;8.03e-18;4!UBERON:0000966;2.66e-14;5!UBERON:0005388;2.66e-14;5!UBERON:0001802;2.66e-14;5!UBERON:0000013;3.60e-14;5!UBERON:0002410;3.60e-14;5!UBERON:0001894;1.33e-10;7!UBERON:0001873;1.64e-09;2!UBERON:0000010;2.75e-08;8!UBERON:0000970;4.00e-08;20!UBERON:0002104;9.18e-08;21!UBERON:0000020;3.91e-07;23!UBERON:0001032;7.39e-07;24!UBERON:0004456;7.39e-07;24!UBERON:0001781;9.37e-07;3!UBERON:0001782;9.37e-07;3!UBERON:0002114;9.37e-07;2!UBERON:0005383;9.37e-07;3!UBERON:0005382;9.37e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.56e-34,2;UBERON:0002757,1.56e-34,2;UBERON:0010134,1.56e-34,2;UBERON:0005408,1.56e-34,2;UBERON:0001899,1.56e-34,2;UBERON:0003296,8.04e-18,4;UBERON:0010133,8.04e-18,4;UBERON:0002784,8.04e-18,4;UBERON:0000013,3.37e-14,5;UBERON:0002410,3.37e-14,5;UBERON:0000966,5.08e-12,6;UBERON:0005388,5.08e-12,6;UBERON:0001802,5.08e-12,6;UBERON:0001894,1.33e-10,7;UBERON:0006222,1.33e-10,7;UBERON:0001873,1.33e-09,2;UBERON:0010122,1.33e-09,2;UBERON:0000010,2.65e-08,8;UBERON:0000970,9.73e-08,21;UBERON:0002104,9.73e-08,21;UBERON:0000020,7.77e-07,24;UBERON:0001032,7.77e-07,24;UBERON:0004456,7.77e-07,24;UBERON:0005383,8.15e-07,3;UBERON:0005382,8.15e-07,3;UBERON:0003056,9.42e-07,61;UBERON:0002114,9.64e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02580050046556,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04174996959975,1.77148277162768,0,0,0,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,4.06765333404958,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76736622782191,1.50954735955355,0,2.18419276384028,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1783348816874,7.39824188881413,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,32.450351056202,0,2.90603563420313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0.12729431655633,0,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02580050046556,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04174996959975,1.77148277162768,0,0,0,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,4.06765333404958,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76736622782191,1.50954735955355,0,2.18419276384028,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1783348816874,7.39824188881413,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,32.450351056202,0,2.90603563420313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0.12729431655633,0,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p6@CHRNA3 | |||
}} | }} |
Latest revision as of 07:14, 19 September 2015
Short description: | p6@CHRNA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CHRNA3_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000348639, NM_000743, NM_001166694_5end |
EntrezGene: | CHRNA3 |
HGNC: | 1957 |
UniProt: | P32297 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.56e-34 | 2 |
regional part of epithalamus | 1.56e-34 | 2 |
secretory circumventricular organ | 1.56e-34 | 2 |
circumventricular organ | 1.56e-34 | 2 |
epithalamus | 1.56e-34 | 2 |
gland of diencephalon | 8.04e-18 | 4 |
neuroendocrine gland | 8.04e-18 | 4 |
regional part of diencephalon | 8.04e-18 | 4 |
sympathetic nervous system | 3.37e-14 | 5 |
autonomic nervous system | 3.37e-14 | 5 |
retina | 5.08e-12 | 6 |
photoreceptor array | 5.08e-12 | 6 |
posterior segment of eyeball | 5.08e-12 | 6 |
diencephalon | 1.33e-10 | 7 |
future diencephalon | 1.33e-10 | 7 |
caudate nucleus | 1.33e-09 | 2 |
future caudate nucleus | 1.33e-09 | 2 |
peripheral nervous system | 2.65e-08 | 8 |
eye | 9.73e-08 | 21 |
visual system | 9.73e-08 | 21 |
sense organ | 7.77e-07 | 24 |
sensory system | 7.77e-07 | 24 |
entire sense organ system | 7.77e-07 | 24 |
caudate-putamen | 8.15e-07 | 3 |
dorsal striatum | 8.15e-07 | 3 |
pre-chordal neural plate | 9.42e-07 | 61 |
duodenum | 9.64e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 5.37e-12 | 6 |
mixed cell type cancer | 1.86e-09 | 2 |
carcinosarcoma | 1.86e-09 | 2 |
neuroectodermal tumor | 1.47e-07 | 10 |