FFCP PHASE1:Hg19::chr15:78913485..78913517,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1136 | |EntrezGene=1136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1957 | |HGNC=1957 | ||
|TSSclassifier=strong | |||
|UniProt=P32297 | |UniProt=P32297 | ||
|association_with_transcript=3bp_to_ENST00000326828_5end | |association_with_transcript=3bp_to_ENST00000326828_5end | ||
|cluster_id=chr15:78913485..78913517,- | |||
|description=CAGE_peak_2_at_CHRNA3_5end | |description=CAGE_peak_2_at_CHRNA3_5end | ||
|id=chr15:78913485..78913517,- | |id=chr15:78913485..78913517,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000123;2.61e-19;2!CL:0000242;2.61e-19;2!CL:0000333;1.87e-17;5!CL:0000312;2.83e-08;5!CL:0000240;4.95e-07;6!CL:0000311;4.95e-07;6!CL:0000079;4.95e-07;6!CL:0000237;4.95e-07;6 | |ontology_enrichment_celltype_v019=CL:0000123;2.61e-19;2!CL:0000242;2.61e-19;2!CL:0000333;1.87e-17;5!CL:0000312;2.83e-08;5!CL:0000240;4.95e-07;6!CL:0000311;4.95e-07;6!CL:0000079;4.95e-07;6!CL:0000237;4.95e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000242,2.61e-19,2;CL:0000312,2.83e-08,5;CL:0000240,4.95e-07,6;CL:0000311,4.95e-07,6;CL:0000079,4.95e-07,6;CL:0000237,4.95e-07,6;CL:0000036,4.95e-07,6;CL:0000357,4.95e-07,6;CL:0000114,4.95e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0003056;5.15e-13;3!UBERON:0006215;1.13e-12;3!UBERON:0005425;3.96e-10;1!CL:0000357;4.95e-07;6!CL:0000114;4.95e-07;6 | |ontology_enrichment_development_v019=UBERON:0003056;5.15e-13;3!UBERON:0006215;1.13e-12;3!UBERON:0005425;3.96e-10;1!CL:0000357;4.95e-07;6!CL:0000114;4.95e-07;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:169;1.21e-14;6!DOID:171;5.38e-09;10 | |ontology_enrichment_disease_v019=DOID:169;1.21e-14;6!DOID:171;5.38e-09;10 | ||
|ontology_enrichment_disease_v019_2=DOID:169,1.21e-14,6;DOID:171,5.38e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0003075!5.30e-21!86;UBERON:0007284!5.30e-21!86;UBERON:0007023!4.00e-20!115;UBERON:0002346!1.10e-19!90;UBERON:0000073!2.22e-18!94;UBERON:0001016!2.22e-18!94;UBERON:0001894!2.86e-17!7;UBERON:0006222!2.86e-17!7;UBERON:0005743!5.59e-15!86;UBERON:0004121!6.13e-14!169;UBERON:0001049!7.28e-14!57;UBERON:0005068!7.28e-14!57;UBERON:0006241!7.28e-14!57;UBERON:0007135!7.28e-14!57;UBERON:0000924!2.22e-13!173;UBERON:0006601!2.22e-13!173;UBERON:0002616!3.25e-13!59;UBERON:0003056!8.27e-13!61;UBERON:0001017!4.99e-12!82;UBERON:0000955!1.82e-11!69;UBERON:0006238!1.82e-11!69;UBERON:0000153!3.05e-11!129;UBERON:0007811!3.05e-11!129;UBERON:0003296!7.14e-11!4;UBERON:0010133!7.14e-11!4;UBERON:0004732!1.05e-10!13;UBERON:0000033!3.40e-09!123;UBERON:0002780!5.12e-09!41;UBERON:0001890!5.12e-09!41;UBERON:0006240!5.12e-09!41;UBERON:0004733!7.48e-09!12;UBERON:0002028!7.48e-09!12;UBERON:0007277!7.48e-09!12;UBERON:0003080!9.96e-09!42;UBERON:0000966!1.49e-08!5;UBERON:0005388!1.49e-08!5;UBERON:0001802!1.49e-08!5;UBERON:0000063!2.17e-08!97;UBERON:0003978!2.42e-08!3;UBERON:0009751!2.42e-08!3;UBERON:0000946!2.42e-08!3;UBERON:0002523!2.42e-08!3;UBERON:0005983!2.42e-08!3;UBERON:0002165!2.42e-08!3;UBERON:0002062!2.42e-08!3;UBERON:0007280!2.42e-08!3;UBERON:0002104!4.13e-08!21;UBERON:0001032!7.04e-07!24;UBERON:0004456!7.04e-07!24;UBERON:0003076!7.14e-07!15;UBERON:0003057!7.14e-07!15;UBERON:0002298!7.79e-07!8 | |ontology_enrichment_uberon=UBERON:0003075!5.30e-21!86;UBERON:0007284!5.30e-21!86;UBERON:0007023!4.00e-20!115;UBERON:0002346!1.10e-19!90;UBERON:0000073!2.22e-18!94;UBERON:0001016!2.22e-18!94;UBERON:0001894!2.86e-17!7;UBERON:0006222!2.86e-17!7;UBERON:0005743!5.59e-15!86;UBERON:0004121!6.13e-14!169;UBERON:0001049!7.28e-14!57;UBERON:0005068!7.28e-14!57;UBERON:0006241!7.28e-14!57;UBERON:0007135!7.28e-14!57;UBERON:0000924!2.22e-13!173;UBERON:0006601!2.22e-13!173;UBERON:0002616!3.25e-13!59;UBERON:0003056!8.27e-13!61;UBERON:0001017!4.99e-12!82;UBERON:0000955!1.82e-11!69;UBERON:0006238!1.82e-11!69;UBERON:0000153!3.05e-11!129;UBERON:0007811!3.05e-11!129;UBERON:0003296!7.14e-11!4;UBERON:0010133!7.14e-11!4;UBERON:0004732!1.05e-10!13;UBERON:0000033!3.40e-09!123;UBERON:0002780!5.12e-09!41;UBERON:0001890!5.12e-09!41;UBERON:0006240!5.12e-09!41;UBERON:0004733!7.48e-09!12;UBERON:0002028!7.48e-09!12;UBERON:0007277!7.48e-09!12;UBERON:0003080!9.96e-09!42;UBERON:0000966!1.49e-08!5;UBERON:0005388!1.49e-08!5;UBERON:0001802!1.49e-08!5;UBERON:0000063!2.17e-08!97;UBERON:0003978!2.42e-08!3;UBERON:0009751!2.42e-08!3;UBERON:0000946!2.42e-08!3;UBERON:0002523!2.42e-08!3;UBERON:0005983!2.42e-08!3;UBERON:0002165!2.42e-08!3;UBERON:0002062!2.42e-08!3;UBERON:0007280!2.42e-08!3;UBERON:0002104!4.13e-08!21;UBERON:0001032!7.04e-07!24;UBERON:0004456!7.04e-07!24;UBERON:0003076!7.14e-07!15;UBERON:0003057!7.14e-07!15;UBERON:0002298!7.79e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.87e-20;2!UBERON:0005058;5.87e-20;2!UBERON:0009113;5.87e-20;2!UBERON:0001905;3.13e-19;2!UBERON:0002757;3.13e-19;2!UBERON:0010134;3.13e-19;2!UBERON:0005408;3.13e-19;2!UBERON:0001899;3.13e-19;2!UBERON:0000013;1.87e-17;5!UBERON:0002410;1.87e-17;5!UBERON:0000010;1.29e-16;8!UBERON:0000941;3.96e-10;1!UBERON:0001785;3.96e-10;1!UBERON:0002464;3.96e-10;1!UBERON:0004904;3.96e-10;1!UBERON:0001021;3.96e-10;1!UBERON:0003296;4.35e-10;4!UBERON:0010133;4.35e-10;4!UBERON:0002784;4.35e-10;4!UBERON:0004177;1.57e-08;5!UBERON:0005057;1.57e-08;5!UBERON:0002037;8.98e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0002370;5.87e-20;2!UBERON:0005058;5.87e-20;2!UBERON:0009113;5.87e-20;2!UBERON:0001905;3.13e-19;2!UBERON:0002757;3.13e-19;2!UBERON:0010134;3.13e-19;2!UBERON:0005408;3.13e-19;2!UBERON:0001899;3.13e-19;2!UBERON:0000013;1.87e-17;5!UBERON:0002410;1.87e-17;5!UBERON:0000010;1.29e-16;8!UBERON:0000941;3.96e-10;1!UBERON:0001785;3.96e-10;1!UBERON:0002464;3.96e-10;1!UBERON:0004904;3.96e-10;1!UBERON:0001021;3.96e-10;1!UBERON:0003296;4.35e-10;4!UBERON:0010133;4.35e-10;4!UBERON:0002784;4.35e-10;4!UBERON:0004177;1.57e-08;5!UBERON:0005057;1.57e-08;5!UBERON:0002037;8.98e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,3.13e-19,2;UBERON:0002757,3.13e-19,2;UBERON:0010134,3.13e-19,2;UBERON:0005408,3.13e-19,2;UBERON:0001899,3.13e-19,2;UBERON:0000013,1.87e-17,5;UBERON:0002410,1.87e-17,5;UBERON:0000010,1.29e-16,8;UBERON:0002370,1.90e-10,4;UBERON:0005058,1.90e-10,4;UBERON:0009113,1.90e-10,4;UBERON:0003295,1.90e-10,4;UBERON:0005562,1.90e-10,4;UBERON:0000941,3.96e-10,1;UBERON:0001785,3.96e-10,1;UBERON:0002464,3.96e-10,1;UBERON:0004904,3.96e-10,1;UBERON:0001021,3.96e-10,1;UBERON:0003902,3.96e-10,1;UBERON:0005425,3.96e-10,1;UBERON:0003296,4.35e-10,4;UBERON:0010133,4.35e-10,4;UBERON:0002784,4.35e-10,4;UBERON:0003351,3.04e-07,6;UBERON:0000966,6.11e-07,6;UBERON:0005388,6.11e-07,6;UBERON:0001802,6.11e-07,6;UBERON:0002037,8.22e-07,6;UBERON:0006215,8.22e-07,6 | |||
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| ||
|short_description=p2@CHRNA3 | |short_description=p2@CHRNA3 | ||
}} | }} |
Latest revision as of 07:13, 19 September 2015
Short description: | p2@CHRNA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CHRNA3_5end |
Coexpression cluster: | NA |
Association with transcript: | 3bp_to_ENST00000326828_5end |
EntrezGene: | CHRNA3 |
HGNC: | 1957 |
UniProt: | P32297 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 2.61e-19 | 2 |
keratinocyte | 2.83e-08 | 5 |
stratified squamous epithelial cell | 4.95e-07 | 6 |
keratin accumulating cell | 4.95e-07 | 6 |
stratified epithelial cell | 4.95e-07 | 6 |
keratinizing barrier epithelial cell | 4.95e-07 | 6 |
epithelial fate stem cell | 4.95e-07 | 6 |
stratified epithelial stem cell | 4.95e-07 | 6 |
surface ectodermal cell | 4.95e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
pineal body | 3.13e-19 | 2 |
regional part of epithalamus | 3.13e-19 | 2 |
secretory circumventricular organ | 3.13e-19 | 2 |
circumventricular organ | 3.13e-19 | 2 |
epithalamus | 3.13e-19 | 2 |
sympathetic nervous system | 1.87e-17 | 5 |
autonomic nervous system | 1.87e-17 | 5 |
peripheral nervous system | 1.29e-16 | 8 |
thymus | 1.90e-10 | 4 |
hemolymphoid system gland | 1.90e-10 | 4 |
thymic region | 1.90e-10 | 4 |
pharyngeal gland | 1.90e-10 | 4 |
thymus primordium | 1.90e-10 | 4 |
cranial nerve II | 3.96e-10 | 1 |
cranial nerve | 3.96e-10 | 1 |
nerve trunk | 3.96e-10 | 1 |
nerve connecting eye with brain | 3.96e-10 | 1 |
nerve | 3.96e-10 | 1 |
retinal neural layer | 3.96e-10 | 1 |
presumptive neural retina | 3.96e-10 | 1 |
gland of diencephalon | 4.35e-10 | 4 |
neuroendocrine gland | 4.35e-10 | 4 |
regional part of diencephalon | 4.35e-10 | 4 |
pharyngeal epithelium | 3.04e-07 | 6 |
retina | 6.11e-07 | 6 |
photoreceptor array | 6.11e-07 | 6 |
posterior segment of eyeball | 6.11e-07 | 6 |
cerebellum | 8.22e-07 | 6 |
rhombic lip | 8.22e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.21e-14 | 6 |
neuroectodermal tumor | 5.38e-09 | 10 |