FFCP PHASE1:Hg19::chr15:78913289..78913302,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr15:78913289..78913302,-
|short_description=p4@CHRNA3
|description=CAGE_peak_4_at_CHRNA3_5end
|association_with_transcript=19bp_to_uc002bea.2,uc002beb.2,uc002...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1136 | |EntrezGene=1136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1957 | |HGNC=1957 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=19bp_to_uc002bea.2,uc002beb.2,uc002bec.2_5end | |||
|cluster_id=chr15:78913289..78913302,- | |||
|coexpression_cluster_id=C1753 | |||
|description=CAGE_peak_4_at_CHRNA3_5end | |||
|id=chr15:78913289..78913302,- | |||
|ontology_enrichment_celltype=CL:0000133!1.79e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000123;4.16e-15;2!CL:0000242;4.16e-15;2!CL:0000333;9.52e-14;5!CL:0002032;5.43e-08;1!CL:0000557;5.43e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,4.80e-15,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.81e-10;3 | |||
|ontology_enrichment_disease=DOID:169!6.86e-08!6 | |||
|ontology_enrichment_disease_v019=DOID:169;1.54e-11;6!DOID:171;4.24e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.51e-11,6;DOID:171,4.20e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0003075!3.62e-18!86;UBERON:0007284!3.62e-18!86;UBERON:0002346!7.28e-17!90;UBERON:0000073!9.93e-17!94;UBERON:0001016!9.93e-17!94;UBERON:0007023!9.59e-14!115;UBERON:0005743!1.70e-13!86;UBERON:0004121!1.95e-13!169;UBERON:0000924!8.39e-13!173;UBERON:0006601!8.39e-13!173;UBERON:0001017!2.67e-10!82;UBERON:0000013!1.33e-09!5;UBERON:0002410!1.33e-09!5;UBERON:0003056!2.05e-09!61;UBERON:0000966!2.08e-09!5;UBERON:0005388!2.08e-09!5;UBERON:0001802!2.08e-09!5;UBERON:0000153!2.59e-09!129;UBERON:0007811!2.59e-09!129;UBERON:0007625!4.65e-09!11;UBERON:0001049!4.81e-09!57;UBERON:0005068!4.81e-09!57;UBERON:0006241!4.81e-09!57;UBERON:0007135!4.81e-09!57;UBERON:0000063!5.02e-09!97;UBERON:0000970!1.40e-08!20;UBERON:0000020!1.81e-08!23;UBERON:0002104!4.84e-08!21;UBERON:0001032!5.45e-08!24;UBERON:0004456!5.45e-08!24;UBERON:0000033!6.07e-08!123;UBERON:0004733!1.02e-07!12;UBERON:0002028!1.02e-07!12;UBERON:0007277!1.02e-07!12;UBERON:0002616!1.12e-07!59;UBERON:0000019!2.25e-07!19;UBERON:0000047!2.25e-07!19;UBERON:0004088!2.25e-07!19;UBERON:0003072!2.25e-07!19;UBERON:0003071!2.25e-07!19;UBERON:0004128!2.25e-07!19;UBERON:0003076!2.34e-07!15;UBERON:0003057!2.34e-07!15;UBERON:0000955!4.46e-07!69;UBERON:0006238!4.46e-07!69;UBERON:0004732!5.29e-07!13;UBERON:0005409!5.54e-07!35;UBERON:0000488!6.35e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002784;2.38e-16;4!UBERON:0001905;2.36e-15;2!UBERON:0002757;2.36e-15;2!UBERON:0010134;2.36e-15;2!UBERON:0005408;2.36e-15;2!UBERON:0001899;2.36e-15;2!UBERON:0002370;5.52e-15;2!UBERON:0005058;5.52e-15;2!UBERON:0009113;5.52e-15;2!UBERON:0000013;9.52e-14;5!UBERON:0002410;9.52e-14;5!UBERON:0005409;2.85e-10;22!UBERON:0001894;1.44e-09;7!UBERON:0000160;2.10e-09;17!UBERON:0003296;4.12e-08;4!UBERON:0010133;4.12e-08;4!UBERON:0002135;5.43e-08;1!UBERON:0000010;7.65e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002784,2.26e-16,4;UBERON:0001905,2.36e-15,2;UBERON:0002757,2.36e-15,2;UBERON:0010134,2.36e-15,2;UBERON:0005408,2.36e-15,2;UBERON:0001899,2.36e-15,2;UBERON:0000013,9.32e-14,5;UBERON:0002410,9.32e-14,5;UBERON:0001894,1.40e-09,7;UBERON:0006222,1.40e-09,7;UBERON:0000160,2.02e-09,17;UBERON:0005409,4.89e-09,25;UBERON:0010371,1.27e-08,104;UBERON:0003296,4.12e-08,4;UBERON:0010133,4.12e-08,4;UBERON:0003075,4.65e-08,82;UBERON:0007284,4.65e-08,82;UBERON:0002135,4.72e-08,1;UBERON:0002370,6.26e-08,4;UBERON:0005058,6.26e-08,4;UBERON:0009113,6.26e-08,4;UBERON:0003295,6.26e-08,4;UBERON:0005562,6.26e-08,4;UBERON:0000010,7.56e-08,8;UBERON:0002346,1.33e-07,86;UBERON:0004121,4.20e-07,171;UBERON:0000924,4.20e-07,171;UBERON:0006601,4.20e-07,171 | |||
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| ||
|short_description=p4@CHRNA3 | |||
}} | }} |
Latest revision as of 07:10, 19 September 2015
Short description: | p4@CHRNA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CHRNA3_5end |
Coexpression cluster: | C1753_neuroblastoma_pineal_rectum_retina_merkel_carcinosarcoma_eye |
Association with transcript: | 19bp_to_uc002bea.2, uc002beb.2, uc002bec.2_5end |
EntrezGene: | CHRNA3 |
HGNC: | 1957 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 4.80e-15 | 2 |
Ontology term | p-value | n |
---|---|---|
regional part of diencephalon | 2.26e-16 | 4 |
pineal body | 2.36e-15 | 2 |
regional part of epithalamus | 2.36e-15 | 2 |
secretory circumventricular organ | 2.36e-15 | 2 |
circumventricular organ | 2.36e-15 | 2 |
epithalamus | 2.36e-15 | 2 |
sympathetic nervous system | 9.32e-14 | 5 |
autonomic nervous system | 9.32e-14 | 5 |
diencephalon | 1.40e-09 | 7 |
future diencephalon | 1.40e-09 | 7 |
intestine | 2.02e-09 | 17 |
gastrointestinal system | 4.89e-09 | 25 |
ecto-epithelium | 1.27e-08 | 104 |
gland of diencephalon | 4.12e-08 | 4 |
neuroendocrine gland | 4.12e-08 | 4 |
neural plate | 4.65e-08 | 82 |
presumptive neural plate | 4.65e-08 | 82 |
mitral valve | 4.72e-08 | 1 |
thymus | 6.26e-08 | 4 |
hemolymphoid system gland | 6.26e-08 | 4 |
thymic region | 6.26e-08 | 4 |
pharyngeal gland | 6.26e-08 | 4 |
thymus primordium | 6.26e-08 | 4 |
peripheral nervous system | 7.56e-08 | 8 |
neurectoderm | 1.33e-07 | 86 |
ectoderm-derived structure | 4.20e-07 | 171 |
ectoderm | 4.20e-07 | 171 |
presumptive ectoderm | 4.20e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.51e-11 | 6 |
neuroectodermal tumor | 4.20e-07 | 10 |