FFCP PHASE1:Hg19::chr18:29078131..29078218,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1829 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3049 | |||
|TSSclassifier=strong | |||
|UniProt=Q14126 | |||
|association_with_transcript=104bp_to_ENST00000261590,NM_001943,uc002kwu.3_5end | |||
|cluster_id=chr18:29078131..29078218,+ | |||
|description=CAGE_peak_1_at_DSG2_5end | |||
|id=chr18:29078131..29078218,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.50e-38!254;CL:0000223!1.64e-17!59;CL:0002076!1.26e-15!43;CL:0002251!4.72e-09!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.58e-13;42!CL:0002251;1.22e-10;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.32e-41,253;CL:0000223,2.28e-19,58;CL:0002076,1.15e-17,42;CL:0002251,1.14e-10,20 | |||
|ontology_enrichment_development_v019=CL:0000223;3.29e-10;58!UBERON:0008947;2.56e-08;29!UBERON:0006595;3.05e-08;86!UBERON:0001041;9.62e-07;30 | |||
|ontology_enrichment_disease=DOID:305!5.83e-32!106;DOID:0050687!1.28e-23!143;DOID:14566!1.01e-18!239;DOID:162!4.96e-18!235;DOID:1749!1.59e-08!14;DOID:193!2.42e-08!29;DOID:299!1.12e-07!25;DOID:120!1.24e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:305;6.21e-10;106!DOID:1749;6.18e-09;14!DOID:193;7.62e-09;29!DOID:299;4.06e-08;25!DOID:120;4.39e-08;27 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.40e-33,106;DOID:0050687,5.74e-26,143;DOID:14566,9.67e-23,239;DOID:162,5.71e-22,235;DOID:1749,6.33e-09,14;DOID:193,7.44e-09,29;DOID:299,3.75e-08,25;DOID:120,4.20e-08,27 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.42e-26!169;UBERON:0000925!2.42e-26!169;UBERON:0006595!2.42e-26!169;UBERON:0001007!6.55e-21!155;UBERON:0001555!6.55e-21!155;UBERON:0007026!6.55e-21!155;UBERON:0004921!3.41e-20!129;UBERON:0004185!3.41e-20!129;UBERON:0000077!3.43e-17!130;UBERON:0001048!4.85e-15!168;UBERON:0001041!8.79e-15!98;UBERON:0000466!1.81e-13!126;UBERON:0001004!1.61e-12!72;UBERON:0005911!2.50e-12!82;UBERON:0000481!5.61e-11!347;UBERON:0000464!8.18e-11!104;UBERON:0003104!1.12e-10!238;UBERON:0009142!1.12e-10!238;UBERON:0000065!7.77e-10!53;UBERON:0003100!2.93e-09!41;UBERON:0008947!7.11e-09!38;UBERON:0003258!7.11e-09!38;UBERON:0005177!2.12e-08!107;UBERON:0005409!4.00e-08!35;UBERON:0003134!6.18e-08!37;UBERON:0000474!6.18e-08!37;UBERON:0003133!1.08e-07!48;UBERON:0000072!1.58e-07!46;UBERON:0005156!1.82e-07!59;UBERON:0000990!1.82e-07!59;UBERON:0000160!5.90e-07!27;UBERON:0002553!7.83e-07!70;UBERON:0002365!8.55e-07!31;UBERON:0002330!8.55e-07!31 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;7.85e-10;33!UBERON:0005409;2.56e-08;22!UBERON:0005911;6.53e-08;36!UBERON:0003100;1.19e-07;41!UBERON:0000065;1.50e-07;44!UBERON:0000474;5.10e-07;37!UBERON:0004807;5.52e-07;22!UBERON:0002365;7.18e-07;31!UBERON:0002330;7.18e-07;31!UBERON:0001004;8.25e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.03e-24,160;UBERON:0000925,2.03e-24,160;UBERON:0006595,2.03e-24,160;UBERON:0004921,1.26e-19,118;UBERON:0001007,1.32e-19,145;UBERON:0001555,1.32e-19,145;UBERON:0007026,1.32e-19,145;UBERON:0001041,3.57e-14,87;UBERON:0001048,6.30e-13,160;UBERON:0005911,8.21e-13,82;UBERON:0001004,9.84e-12,74;UBERON:0003100,8.21e-10,41;UBERON:0000065,1.75e-09,54;UBERON:0008947,5.21e-09,38;UBERON:0003258,5.21e-09,38;UBERON:0005177,7.79e-09,101;UBERON:0003134,2.08e-08,37;UBERON:0000474,2.08e-08,37;UBERON:0003133,3.16e-08,48;UBERON:0005156,7.52e-08,59;UBERON:0000990,7.52e-08,59;UBERON:0005409,3.22e-07,25;UBERON:0000072,3.93e-07,47;UBERON:0002365,5.47e-07,31;UBERON:0002330,5.47e-07,31;UBERON:0003929,9.33e-07,54 | |||
|phase1_expression=0.363356758541113,5.1384125733836,0.563817616383885,1.0007329835313,0,0.872338524100369,0,0,0.522371256399677,11.7952289520724,4.88460817580699,40.8485365883422,32.1795713438713,15.0994950611257,14.5814845320283,6.72325146451775,10.2458069764076,7.30310090387373,10.2465887746006,2.09305798730539,1.22400414746552,0.626909442956176,9.44578757532487,7.25434452886286,7.28147309649856,19.4090050599796,15.8454137638395,17.3163718890094,0,0,3.09632246632152,12.871897142705,27.4097386088208,37.7149090370123,0,0,6.75281010470149,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0.309706370895104,0,0.256160706529101,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0.368277635987565,0.316462387440884,0.211255286311942,0.212604299965044,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.25199300053181,3.92355994087075,4.74091352595139,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0.493313713811028,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0,0,0.144824403882799,0,10.0605128955545,11.5076305659177,0.361439152384566,2.50668955317945,3.76600949298142,13.5198610998687,1.94653948121054,15.0310359290868,21.7294809513313,18.093965852784,4.6497571801688,5.10013403609559,14.4605932685927,0,0.174129737299267,0.132957960518865,3.81584998888547,2.28797964312051,4.82894751728434,0,0,0,0,0,0,0,0.516833518338658,0.35576626268671,0.66944122552934,0,0,0.732186172644509,0,0,0,0,0,0,0,0,1.31780417436063,0,14.3911037207036,0,0,3.97227542439656,0.860509862246441,1.41867352879343,10.6528744027038,10.6748995729705,20.2267389702071,6.22422070799533,4.31074150623002,3.10577615915572,0.605429710579726,2.88087962239999,1.17160715916898,0,1.1409436430889,0.298897361103602,0.117434498643765,0.161872944368132,0.280901613404497,0,0.245668634623536,0,0,0.494533858557114,0,0,1.0100166837244,1.12606667884768,0,0,0.30648779579902,0.300476117813194,15.7670734592429,0,0,0,0,0,0,0,0.675105328965065,0.0974370051611986,0,0,0.161646056818812,0,0,0.169560592310488,76.144776146339,78.8236288507512,107.838527866265,20.1256615113832,18.289108028365,24.7493098312074,23.220076323443,22.9611974296822,16.0590037993365,0,0,1.38134921352481,0.464367928031979,0,26.9739504090844,28.9965666934335,30.3673897653187,26.8014353739717,25.4918949588115,35.5905928666645,21.9775032301068,30.2181056293033,28.0865424570865,1.4763109092493,2.80483547606892,7.8199062152966,1.47008711385542,3.80265104465493,12.7767538168091,8.27105869353966,0,20.5390692367,41.1762744716461,49.0583775776556,21.3563331189477,46.3438562817618,100.643639887322,0,1.03993478527958,23.0930147240437,18.7807256059624,56.4735819274302,0.433099343283221,0,0.190254152234598,5.53143078571493,6.00940313466411,0,0.234004265139238,0,59.9896537515373,132.201934892502,97.5412669027619,58.4817153249599,58.7080555798203,27.22017022073,0,0,0.621984346622316,0.432359860250884,0.37872730027914,4.00036734040665,6.11181480893244,1.17217447210047,5.13217338068116,2.87916979569306,4.80548892550268,7.43148724839503,1.23344192779897,1.30788020649984,4.8403268641827,14.7369755963867,0,1.690605505112,0,0,0.257207374262142,1.41849132023278,0.799266537048298,12.1531294609425,2.17048642156577,6.58592269424615,2.28015329005615,12.4387182059891,10.2953743481346,72.0440111172411,61.0073421020206,55.9848750619519,0,0,0,0.479249710983165,2.29723871668228,0,1.88215698667853,0.410952645100767,4.1184021545176,0,0,0,0,3.81141936333695,3.90419561572865,0.773288812777695,1.17261385734044,1.91381625495949,0,0,0,18.2810322661518,4.50153468953709,9.76554085319048,5.61521326133179,0.356857977594324,0.315404830067869,0,3.61135319673263,2.27407504055985,2.0694614258501,9.96338397803155,4.79359838208428,0,0.391602314925481,0.343143423810856,0,0.215714200818617,0.106727557803444,34.8596707163198,58.252403828674,45.9633245861114,0,13.8115775959256,5.61320188866147,2.43464383585832,0.511707249066704,0.482561763430822,0,0.154209693802656,1.24293207719189,0.821271560138091,1.03850885836724,0.232420756919918,18.0080579891517,98.8496898595194,61.7863435759864,0,0,0.786746489756545,15.340786838852,63.5376531111422,8.62784746094541,8.76835347919564,59.5311186955819,0,0,20.080180197499,0,5.68987518842091,5.01689773854853,27.2717612158191,24.101204258933,7.16399215110971,0.438519753291869,0.522870902049801,11.2838055051211,5.24823433119529,9.11059505060049,20.8142843528399,9.065377017016,7.75589299253527,36.1787288937589,16.251506150913,0,4.54352375972973,2.61882649094895,4.75861391651002,2.61889487720608,13.9646318328756,11.0212687374814,10.6533284270126,4.71869788927708,165.450200276339,144.52693065856,142.79862528144,174.699487537535,0,0,0,0,1.06461206063404,0,0,0,5.95453390975468,18.6663860584048,53.1858241047471,0.511795582622668,0.42793898803392,0,0.78494864019923,2.15846949099978,8.5106479218177,8.83593017592648,0.404364963146632,0,0.421258456238981,0.975267478179181,13.8916689089832,0,0.272999822815972,0,1.13008116620243,0.551365343546124,0.66343897524122,0,0,0.655894752046633,20.696858450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| |||
|short_description=p1@DSG2 | |||
}} |
Latest revision as of 05:10, 19 September 2015
Short description: | p1@DSG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DSG2_5end |
Coexpression cluster: | NA |
Association with transcript: | 104bp_to_ENST00000261590, NM_001943, uc002kwu.3_5end |
EntrezGene: | DSG2 |
HGNC: | 3049 |
UniProt: | Q14126 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.32e-41 | 253 |
endodermal cell | 2.28e-19 | 58 |
endo-epithelial cell | 1.15e-17 | 42 |
epithelial cell of alimentary canal | 1.14e-10 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.03e-24 | 160 |
endoderm | 2.03e-24 | 160 |
presumptive endoderm | 2.03e-24 | 160 |
subdivision of digestive tract | 1.26e-19 | 118 |
digestive system | 1.32e-19 | 145 |
digestive tract | 1.32e-19 | 145 |
primitive gut | 1.32e-19 | 145 |
foregut | 3.57e-14 | 87 |
primordium | 6.30e-13 | 160 |
endo-epithelium | 8.21e-13 | 82 |
respiratory system | 9.84e-12 | 74 |
female organism | 8.21e-10 | 41 |
respiratory tract | 1.75e-09 | 54 |
respiratory primordium | 5.21e-09 | 38 |
endoderm of foregut | 5.21e-09 | 38 |
trunk region element | 7.79e-09 | 101 |
female reproductive organ | 2.08e-08 | 37 |
female reproductive system | 2.08e-08 | 37 |
reproductive organ | 3.16e-08 | 48 |
reproductive structure | 7.52e-08 | 59 |
reproductive system | 7.52e-08 | 59 |
gastrointestinal system | 3.22e-07 | 25 |
segment of respiratory tract | 3.93e-07 | 47 |
exocrine gland | 5.47e-07 | 31 |
exocrine system | 5.47e-07 | 31 |
gut epithelium | 9.33e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.40e-33 | 106 |
cell type cancer | 5.74e-26 | 143 |
disease of cellular proliferation | 9.67e-23 | 239 |
cancer | 5.71e-22 | 235 |
squamous cell carcinoma | 6.33e-09 | 14 |
reproductive organ cancer | 7.44e-09 | 29 |
adenocarcinoma | 3.75e-08 | 25 |
female reproductive organ cancer | 4.20e-08 | 27 |