FFCP PHASE1:Hg19::chr12:54402694..54402705,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3224 | |EntrezGene=3224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5129 | |HGNC=5129 | ||
|TSSclassifier=strong | |||
|UniProt=P31273 | |UniProt=P31273 | ||
|association_with_transcript=-126bp_to_ENST00000040584_5end | |association_with_transcript=-126bp_to_ENST00000040584_5end | ||
|cluster_id=chr12:54402694..54402705,+ | |||
|coexpression_cluster_id=C1362 | |||
|description=CAGE_peak_5_at_HOXC8_5end | |description=CAGE_peak_5_at_HOXC8_5end | ||
|id=chr12:54402694..54402705,+ | |id=chr12:54402694..54402705,+ | ||
|ontology_enrichment_celltype=CL:0002334!1.19e-13!12;CL:0000055!2.48e-12!180;CL:0000057!4.87e-10!75;CL:0002620!5.37e-09!23;CL:0000136!1.61e-08!15;CL:0002570!3.91e-08!8;CL:0002580!8.73e-07!3 | |ontology_enrichment_celltype=CL:0002334!1.19e-13!12;CL:0000055!2.48e-12!180;CL:0000057!4.87e-10!75;CL:0002620!5.37e-09!23;CL:0000136!1.61e-08!15;CL:0002570!3.91e-08!8;CL:0002580!8.73e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002580;1.27e-18;3!CL:0002564;2.24e-17;3!CL:0002554;2.82e-13;2!CL:0002617;6.69e-13;2!CL:0002588;1.57e-12;2!CL:0002602;3.61e-12;2!CL:0002334;3.96e-12;12!CL:0002570;4.79e-12;8!CL:0002569;2.07e-09;6!CL:0002568;6.48e-07;1!CL:0002616;6.48e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,1.39e-18,3;CL:0002564,2.66e-17,3;CL:0002554,2.91e-13,2;CL:0002617,4.42e-13,2;CL:0002588,1.36e-12,2;CL:0002602,1.62e-12,2;CL:0002334,4.25e-12,12;CL:0002570,7.35e-12,8;CL:0000136,1.18e-09,15;CL:0002569,2.10e-09,6;CL:0000057,3.64e-07,76;CL:0002616,4.31e-07,1;CL:0002568,6.88e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4235;6.48e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4235,4.57e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002199!4.42e-10!45;UBERON:0002416!4.42e-10!45;UBERON:0004905!1.72e-08!5;UBERON:0000982!1.72e-08!5;UBERON:0004770!1.72e-08!5;UBERON:0002097!3.63e-08!40;UBERON:0004457!1.09e-07!12;UBERON:0000042!1.09e-07!12;UBERON:0001013!2.28e-07!14;UBERON:0003688!3.13e-07!6;UBERON:0002358!3.13e-07!6;UBERON:0003684!3.13e-07!6;UBERON:0001178!3.13e-07!6 | |ontology_enrichment_uberon=UBERON:0002199!4.42e-10!45;UBERON:0002416!4.42e-10!45;UBERON:0004905!1.72e-08!5;UBERON:0000982!1.72e-08!5;UBERON:0004770!1.72e-08!5;UBERON:0002097!3.63e-08!40;UBERON:0004457!1.09e-07!12;UBERON:0000042!1.09e-07!12;UBERON:0001013!2.28e-07!14;UBERON:0003688!3.13e-07!6;UBERON:0002358!3.13e-07!6;UBERON:0003684!3.13e-07!6;UBERON:0001178!3.13e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0011135;9.14e-28;5!UBERON:0002216;9.14e-28;5!UBERON:0011134;9.14e-28;5!UBERON:0002209;9.14e-28;5!UBERON:0002213;9.14e-28;5!UBERON:0007844;9.14e-28;5!UBERON:0011138;9.14e-28;5!UBERON:0001130;9.14e-28;5!UBERON:0001066;9.14e-28;5!UBERON:0001468;9.14e-28;5!UBERON:0002242;2.24e-17;3!UBERON:0004905;2.58e-17;8!UBERON:0000982;2.58e-17;8!UBERON:0004770;2.58e-17;8!UBERON:0000310;8.84e-15;10!UBERON:0001443;2.05e-13;11!UBERON:0006444;3.61e-12;2!UBERON:0001995;3.61e-12;2!UBERON:0004715;3.61e-12;2!UBERON:0001013;2.83e-10;14!UBERON:0003422;2.07e-09;6!UBERON:0000075;1.46e-08;16!UBERON:0002418;2.11e-08;3!UBERON:0004755;2.11e-08;3!UBERON:0003104;3.96e-08;7!UBERON:0009142;3.96e-08;7!UBERON:0004765;2.44e-07;26 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,4.92e-28,5;UBERON:0002216,4.92e-28,5;UBERON:0011134,4.92e-28,5;UBERON:0002209,4.92e-28,5;UBERON:0002213,4.92e-28,5;UBERON:0005856,4.92e-28,5;UBERON:0005866,4.92e-28,5;UBERON:0005863,4.92e-28,5;UBERON:0007844,4.92e-28,5;UBERON:0011138,4.92e-28,5;UBERON:0001130,4.92e-28,5;UBERON:0001066,4.92e-28,5;UBERON:0001468,4.92e-28,5;UBERON:0004905,1.76e-17,8;UBERON:0000982,1.76e-17,8;UBERON:0004770,1.76e-17,8;UBERON:0002242,2.66e-17,3;UBERON:0003068,2.66e-17,3;UBERON:0002328,2.66e-17,3;UBERON:0004880,2.66e-17,3;UBERON:0000310,7.57e-15,10;UBERON:0001443,1.78e-13,11;UBERON:0006444,1.62e-12,2;UBERON:0001995,1.62e-12,2;UBERON:0004715,1.62e-12,2;UBERON:0001013,3.32e-10,14;UBERON:0003422,2.10e-09,6;UBERON:0000075,1.21e-08,16;UBERON:0002418,1.24e-08,3;UBERON:0004755,1.24e-08,3 | |||
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| ||
|short_description=p5@HOXC8 | |short_description=p5@HOXC8 | ||
}} | }} |
Latest revision as of 04:51, 19 September 2015
Short description: | p5@HOXC8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HOXC8_5end |
Coexpression cluster: | C1362_Preadipocyte_Adipocyte_Fibroblast_Mesenchymal_mesenchymal_Myoblast_Smooth |
Association with transcript: | -126bp_to_ENST00000040584_5end |
EntrezGene: | HOXC8 |
HGNC: | 5129 |
UniProt: | P31273 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 1.39e-18 | 3 |
nucleus pulposus cell of intervertebral disc | 2.66e-17 | 3 |
fibroblast of lymphatic vessel | 2.91e-13 | 2 |
adipocyte of breast | 4.42e-13 | 2 |
smooth muscle cell of the umbilical vein | 1.36e-12 | 2 |
annulus pulposus cell | 1.62e-12 | 2 |
preadipocyte | 4.25e-12 | 12 |
mesenchymal stem cell of adipose | 7.35e-12 | 8 |
fat cell | 1.18e-09 | 15 |
mesenchymal stem cell of umbilical cord | 2.10e-09 | 6 |
fibroblast | 3.64e-07 | 76 |
perirenal adipocyte cell | 4.31e-07 | 1 |
mesenchymal stem cell of Wharton's jelly | 6.88e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 4.92e-28 | 5 |
symphysis | 4.92e-28 | 5 |
nonsynovial joint | 4.92e-28 | 5 |
fibrous joint | 4.92e-28 | 5 |
cartilaginous joint | 4.92e-28 | 5 |
developing mesenchymal condensation | 4.92e-28 | 5 |
pre-cartilage condensation | 4.92e-28 | 5 |
cartilaginous condensation | 4.92e-28 | 5 |
cartilage element | 4.92e-28 | 5 |
post-cranial axial skeletal system | 4.92e-28 | 5 |
vertebral column | 4.92e-28 | 5 |
intervertebral disk | 4.92e-28 | 5 |
intervertebral joint | 4.92e-28 | 5 |
articulation | 1.76e-17 | 8 |
skeletal joint | 1.76e-17 | 8 |
articular system | 1.76e-17 | 8 |
nucleus pulposus | 2.66e-17 | 3 |
axial mesoderm | 2.66e-17 | 3 |
notochord | 2.66e-17 | 3 |
chordamesoderm | 2.66e-17 | 3 |
breast | 7.57e-15 | 10 |
chest | 1.78e-13 | 11 |
annulus fibrosus | 1.62e-12 | 2 |
fibrocartilage | 1.62e-12 | 2 |
annulus fibrosus disci intervertebralis | 1.62e-12 | 2 |
adipose tissue | 3.32e-10 | 14 |
mesenchyme of umbilical cord | 2.10e-09 | 6 |
subdivision of skeletal system | 1.21e-08 | 16 |
cartilage tissue | 1.24e-08 | 3 |
skeletal tissue | 1.24e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 4.57e-07 | 1 |