FFCP PHASE1:Hg19::chr17:2278539..2278556,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9905 | |EntrezGene=9905 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29026 | |HGNC=29026 | ||
|TSSclassifier=strong | |||
|UniProt=O43147 | |UniProt=O43147 | ||
|association_with_transcript=-229bp_to_uc002fup.1_5end | |association_with_transcript=-229bp_to_uc002fup.1_5end | ||
|cluster_id=chr17:2278539..2278556,+ | |||
|coexpression_cluster_id=C323 | |coexpression_cluster_id=C323 | ||
|description=CAGE_peak_6_at_SGSM2_5end | |description=CAGE_peak_6_at_SGSM2_5end | ||
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|ontology_enrichment_celltype=CL:0000148!1.29e-21!10;CL:0000541!1.29e-21!10;CL:0000147!3.70e-15!14;CL:0000349!5.60e-15!3;CL:0002577!5.60e-15!3;CL:0002541!1.53e-14!3;CL:0002567!2.10e-14!3;CL:0000710!2.31e-13!20;CL:0002536!9.63e-11!2;CL:0000075!1.48e-09!27;CL:0002537!5.41e-09!5;CL:0002077!1.39e-07!33 | |ontology_enrichment_celltype=CL:0000148!1.29e-21!10;CL:0000541!1.29e-21!10;CL:0000147!3.70e-15!14;CL:0000349!5.60e-15!3;CL:0002577!5.60e-15!3;CL:0002541!1.53e-14!3;CL:0002567!2.10e-14!3;CL:0000710!2.31e-13!20;CL:0002536!9.63e-11!2;CL:0000075!1.48e-09!27;CL:0002537!5.41e-09!5;CL:0002077!1.39e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.62e-49;19!CL:0002577;4.02e-36;3!CL:0000148;1.24e-28;10!CL:0002536;3.44e-25;2!CL:0000147;1.78e-20;14!CL:0002541;1.04e-16;3!CL:0002567;2.68e-16;3!CL:0000710;2.44e-14;20!CL:0002566;9.17e-13;1!CL:0000075;1.30e-10;27!CL:0002537;1.54e-10;5!CL:0002077;4.32e-07;34 | |ontology_enrichment_celltype_v019=CL:0000349;1.62e-49;19!CL:0002577;4.02e-36;3!CL:0000148;1.24e-28;10!CL:0002536;3.44e-25;2!CL:0000147;1.78e-20;14!CL:0002541;1.04e-16;3!CL:0002567;2.68e-16;3!CL:0000710;2.44e-14;20!CL:0002566;9.17e-13;1!CL:0000075;1.30e-10;27!CL:0002537;1.54e-10;5!CL:0002077;4.32e-07;34 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.62e-49,19;CL:0002577,3.79e-36,3;CL:0000148,1.27e-28,10;CL:0000541,1.27e-28,10;CL:0002536,3.44e-25,2;CL:0000147,1.81e-20,14;CL:0002541,1.08e-16,3;CL:0002567,2.38e-16,3;CL:0000710,2.47e-14,20;CL:0002566,1.09e-12,1;CL:0000075,1.32e-10,27;CL:0002537,1.54e-10,5;CL:0002077,2.09e-08,34 | |||
|ontology_enrichment_development_v019=UBERON:0008801;6.06e-13;1!UBERON:0007297;4.17e-07;2 | |ontology_enrichment_development_v019=UBERON:0008801;6.06e-13;1!UBERON:0007297;4.17e-07;2 | ||
|ontology_enrichment_disease=DOID:1909!1.46e-09!2 | |ontology_enrichment_disease=DOID:1909!1.46e-09!2 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.56e-46!14;UBERON:0000158!7.56e-46!14;UBERON:0003124!6.52e-32!7;UBERON:0000478!1.27e-25!24;UBERON:0001987!3.84e-19!4;UBERON:0004340!3.84e-19!4;UBERON:0000305!7.76e-17!7;UBERON:0004871!1.08e-14!8;UBERON:0000476!1.53e-14!3;UBERON:0000920!1.53e-14!3;UBERON:0006947!3.44e-14!3;UBERON:0004054!3.44e-14!3;UBERON:0004923!9.95e-13!57;UBERON:0005904!9.25e-11!4;UBERON:0004175!2.22e-10!25;UBERON:0005156!6.41e-07!59;UBERON:0000990!6.41e-07!59 | |ontology_enrichment_uberon=UBERON:0005631!7.56e-46!14;UBERON:0000158!7.56e-46!14;UBERON:0003124!6.52e-32!7;UBERON:0000478!1.27e-25!24;UBERON:0001987!3.84e-19!4;UBERON:0004340!3.84e-19!4;UBERON:0000305!7.76e-17!7;UBERON:0004871!1.08e-14!8;UBERON:0000476!1.53e-14!3;UBERON:0000920!1.53e-14!3;UBERON:0006947!3.44e-14!3;UBERON:0004054!3.44e-14!3;UBERON:0004923!9.95e-13!57;UBERON:0005904!9.25e-11!4;UBERON:0004175!2.22e-10!25;UBERON:0005156!6.41e-07!59;UBERON:0000990!6.41e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.61e-42;10!UBERON:0000158;1.61e-42;10!UBERON:0000478;5.06e-39;24!UBERON:0000305;9.80e-28;7!UBERON:0001987;2.76e-27;4!UBERON:0003124;1.04e-16;3!UBERON:0000920;1.04e-16;3!UBERON:0001831;6.06e-13;1!UBERON:0001301;6.06e-13;1!UBERON:0001567;6.06e-13;1!UBERON:0001829;4.17e-07;2!UBERON:0004089;4.17e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0005631;1.61e-42;10!UBERON:0000158;1.61e-42;10!UBERON:0000478;5.06e-39;24!UBERON:0000305;9.80e-28;7!UBERON:0001987;2.76e-27;4!UBERON:0003124;1.04e-16;3!UBERON:0000920;1.04e-16;3!UBERON:0001831;6.06e-13;1!UBERON:0001301;6.06e-13;1!UBERON:0001567;6.06e-13;1!UBERON:0001829;4.17e-07;2!UBERON:0004089;4.17e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.72e-67,14;UBERON:0000158,1.72e-67,14;UBERON:0003124,4.57e-42,7;UBERON:0000478,5.06e-39,24;UBERON:0000305,9.80e-28,7;UBERON:0001987,2.64e-27,4;UBERON:0004340,2.64e-27,4;UBERON:0004871,2.57e-24,8;UBERON:0000920,1.08e-16,3;UBERON:0004923,1.48e-13,66;UBERON:0001301,6.06e-13,1;UBERON:0001831,6.82e-13,1;UBERON:0001567,6.82e-13,1;UBERON:0008801,6.82e-13,1;UBERON:0004175,8.38e-08,25;UBERON:0001829,4.42e-07,2;UBERON:0004089,4.42e-07,2 | |||
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| ||
|short_description=p6@SGSM2 | |short_description=p6@SGSM2 | ||
}} | }} |
Latest revision as of 03:04, 19 September 2015
Short description: | p6@SGSM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SGSM2_5end |
Coexpression cluster: | C323_Placental_Amniotic_neuroblastoma_amniotic_chorionic_hairy_locus |
Association with transcript: | -229bp_to_uc002fup.1_5end |
EntrezGene: | SGSM2 |
HGNC: | 29026 |
UniProt: | O43147 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.62e-49 | 19 |
placental epithelial cell | 3.79e-36 | 3 |
melanocyte | 1.27e-28 | 10 |
melanoblast | 1.27e-28 | 10 |
amniotic epithelial cell | 3.44e-25 | 2 |
pigment cell | 1.81e-20 | 14 |
chorionic membrane mesenchymal stem cell | 1.08e-16 | 3 |
light melanocyte | 2.38e-16 | 3 |
neurecto-epithelial cell | 2.47e-14 | 20 |
dark melanocyte | 1.09e-12 | 1 |
columnar/cuboidal epithelial cell | 1.32e-10 | 27 |
amnion mesenchymal stem cell | 1.54e-10 | 5 |
ecto-epithelial cell | 2.09e-08 | 34 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.72e-67 | 14 |
membranous layer | 1.72e-67 | 14 |
chorion | 4.57e-42 | 7 |
extraembryonic structure | 5.06e-39 | 24 |
amnion | 9.80e-28 | 7 |
placenta | 2.64e-27 | 4 |
allantois | 2.64e-27 | 4 |
somatic layer of lateral plate mesoderm | 2.57e-24 | 8 |
egg chorion | 1.08e-16 | 3 |
organ component layer | 1.48e-13 | 66 |
epididymis | 6.06e-13 | 1 |
parotid gland | 6.82e-13 | 1 |
cheek | 6.82e-13 | 1 |
parotid gland primordium | 6.82e-13 | 1 |
internal genitalia | 8.38e-08 | 25 |
major salivary gland | 4.42e-07 | 2 |
midface | 4.42e-07 | 2 |