FFCP PHASE1:Hg19::chr3:54935280..54935287,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=40702 | |HGNC=40702 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000471265,uc003dhk.1_5end | |association_with_transcript=0bp_to_ENST00000471265,uc003dhk.1_5end | ||
|cluster_id=chr3:54935280..54935287,- | |||
|coexpression_cluster_id=C1007 | |||
|description=CAGE_peak_1_at_CACNA2D3-AS1_5end | |description=CAGE_peak_1_at_CACNA2D3-AS1_5end | ||
|id=chr3:54935280..54935287,- | |id=chr3:54935280..54935287,- | ||
|ontology_enrichment_celltype=CL:0002541!5.31e-21!3;CL:0002536!2.46e-14!2;CL:0002537!1.64e-12!5;CL:0000349!5.74e-10!3;CL:0002577!5.74e-10!3;CL:0002561!7.97e-08!1 | |ontology_enrichment_celltype=CL:0002541!5.31e-21!3;CL:0002536!2.46e-14!2;CL:0002537!1.64e-12!5;CL:0000349!5.74e-10!3;CL:0002577!5.74e-10!3;CL:0002561!7.97e-08!1 | ||
|ontology_enrichment_celltype_v019=CL:0002541;8.37e-34;3!CL:0000349;1.66e-32;19!CL:0002536;1.29e-13;2!CL:0002577;1.60e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,7.70e-34,3;CL:0000349,1.66e-32,19;CL:0002536,1.37e-13,2;CL:0002577,1.41e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;3.58e-26;1 | |||
|ontology_enrichment_disease=DOID:1799!1.11e-07!1;DOID:10165!1.11e-07!1;DOID:1798!1.11e-07!1 | |ontology_enrichment_disease=DOID:1799!1.11e-07!1;DOID:10165!1.11e-07!1;DOID:1798!1.11e-07!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.58e-56!14;UBERON:0000158!7.58e-56!14;UBERON:0003124!2.04e-34!7;UBERON:0000478!9.40e-32!24;UBERON:0000305!1.48e-23!7;UBERON:0000476!5.31e-21!3;UBERON:0000920!5.31e-21!3;UBERON:0004871!1.35e-20!8;UBERON:0001987!6.47e-16!4;UBERON:0004340!6.47e-16!4;UBERON:0004923!1.60e-14!57;UBERON:0005933!7.97e-08!1;UBERON:0005942!7.97e-08!1;UBERON:0005932!7.97e-08!1 | |ontology_enrichment_uberon=UBERON:0005631!7.58e-56!14;UBERON:0000158!7.58e-56!14;UBERON:0003124!2.04e-34!7;UBERON:0000478!9.40e-32!24;UBERON:0000305!1.48e-23!7;UBERON:0000476!5.31e-21!3;UBERON:0000920!5.31e-21!3;UBERON:0004871!1.35e-20!8;UBERON:0001987!6.47e-16!4;UBERON:0004340!6.47e-16!4;UBERON:0004923!1.60e-14!57;UBERON:0005933!7.97e-08!1;UBERON:0005942!7.97e-08!1;UBERON:0005932!7.97e-08!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.23e-39;10!UBERON:0000158;1.23e-39;10!UBERON:0000478;6.33e-37;24!UBERON:0003124;8.37e-34;3!UBERON:0000920;8.37e-34;3!UBERON:0001987;1.18e-25;4!UBERON:0000305;5.04e-15;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.84e-63,14;UBERON:0000158,4.84e-63,14;UBERON:0003124,1.06e-56,7;UBERON:0000478,5.95e-37,24;UBERON:0000920,7.70e-34,3;UBERON:0001987,8.66e-26,4;UBERON:0004340,8.66e-26,4;UBERON:0000305,5.81e-15,7;UBERON:0004923,1.38e-13,66;UBERON:0004871,3.20e-13,8 | |||
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|short_description=p1@CACNA2D3-AS1 | |short_description=p1@CACNA2D3-AS1 | ||
}} | }} |
Latest revision as of 02:18, 19 September 2015
Short description: | p1@CACNA2D3-AS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CACNA2D3-AS1_5end |
Coexpression cluster: | C1007_amniotic_chorionic_Placental_Amniotic_placenta_rectal_umbilical |
Association with transcript: | 0bp_to_ENST00000471265, uc003dhk.1_5end |
EntrezGene: | NA |
HGNC: | 40702 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 7.70e-34 | 3 |
extraembryonic cell | 1.66e-32 | 19 |
amniotic epithelial cell | 1.37e-13 | 2 |
placental epithelial cell | 1.41e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.84e-63 | 14 |
membranous layer | 4.84e-63 | 14 |
chorion | 1.06e-56 | 7 |
extraembryonic structure | 5.95e-37 | 24 |
egg chorion | 7.70e-34 | 3 |
placenta | 8.66e-26 | 4 |
allantois | 8.66e-26 | 4 |
amnion | 5.81e-15 | 7 |
organ component layer | 1.38e-13 | 66 |
somatic layer of lateral plate mesoderm | 3.20e-13 | 8 |