FFCP PHASE1:Hg19::chr15:74495084..74495137,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:74495084..74495137,-
|short_description=p1@STRA6
|description=CAGE_peak_1_at_STRA6_5end
|association_with_transcript=0bp_to_ENST00000536129_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64220 | |EntrezGene=64220 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30650 | |HGNC=30650 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYG1 | |UniProt=F5GYG1 | ||
|association_with_transcript=0bp_to_ENST00000536129_5end | |||
|cluster_id=chr15:74495084..74495137,- | |||
|coexpression_cluster_id=C2348 | |||
|description=CAGE_peak_1_at_STRA6_5end | |||
|id=chr15:74495084..74495137,- | |||
|ontology_enrichment_celltype=CL:0000133!5.58e-10!59;CL:0002319!7.19e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000349;5.79e-10;19!CL:0000039;1.50e-07;7!CL:0000586;1.50e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.87e-10,19;CL:0000133,7.17e-09,59;CL:0000039,1.76e-07,7;CL:0000586,1.76e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!8.07e-10!22;DOID:2994!8.07e-10!22;DOID:0050687!6.47e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;7.75e-11;22!DOID:2994;7.75e-11;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,8.60e-11,22;DOID:2994,8.60e-11,22;DOID:0050687,2.10e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0002104!1.49e-10!21;UBERON:0001032!1.57e-10!24;UBERON:0004456!1.57e-10!24;UBERON:0000970!3.13e-10!20;UBERON:0000020!3.34e-10!23;UBERON:0000019!1.21e-09!19;UBERON:0000047!1.21e-09!19;UBERON:0004088!1.21e-09!19;UBERON:0003072!1.21e-09!19;UBERON:0003071!1.21e-09!19;UBERON:0004128!1.21e-09!19;UBERON:0002200!5.92e-09!11;UBERON:0006876!5.92e-09!11;UBERON:0001456!5.97e-09!21;UBERON:0000073!1.36e-08!94;UBERON:0001016!1.36e-08!94;UBERON:0004121!1.43e-08!169;UBERON:0000924!1.67e-08!173;UBERON:0006601!1.67e-08!173;UBERON:0007625!2.98e-08!11;UBERON:0005631!3.18e-08!14;UBERON:0000158!3.18e-08!14;UBERON:0000481!2.44e-07!347;UBERON:0000478!3.97e-07!24;UBERON:0005743!6.85e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001032;4.18e-15;24!UBERON:0004456;4.18e-15;24!UBERON:0002104;5.79e-15;21!UBERON:0000020;1.27e-14;23!UBERON:0000970;1.72e-14;20!UBERON:0000019;1.15e-13;19!UBERON:0000047;1.15e-13;19!UBERON:0004088;1.15e-13;19!UBERON:0010230;1.15e-13;19!UBERON:0001456;7.68e-12;21!UBERON:0007625;3.40e-11;11!UBERON:0000478;1.47e-09;24!UBERON:0001801;6.85e-09;14!UBERON:0006876;8.03e-09;11!UBERON:0002203;5.31e-08;6!UBERON:0001768;5.31e-08;6!UBERON:0002200;5.31e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000020,4.68e-15,24;UBERON:0001032,4.68e-15,24;UBERON:0004456,4.68e-15,24;UBERON:0000970,6.84e-15,21;UBERON:0002104,6.84e-15,21;UBERON:0000019,4.56e-14,20;UBERON:0000047,4.56e-14,20;UBERON:0010312,4.56e-14,20;UBERON:0004088,4.56e-14,20;UBERON:0010230,4.56e-14,20;UBERON:0003072,4.56e-14,20;UBERON:0004128,4.56e-14,20;UBERON:0003071,4.56e-14,20;UBERON:0001456,2.91e-12,22;UBERON:0007625,3.25e-11,11;UBERON:0005085,5.55e-10,31;UBERON:0005631,8.60e-10,14;UBERON:0000158,8.60e-10,14;UBERON:0000478,1.67e-09,24;UBERON:0006876,7.44e-09,11;UBERON:0001801,7.73e-09,14;UBERON:0002203,4.83e-08,6;UBERON:0001768,4.83e-08,6;UBERON:0002200,4.83e-08,6;UBERON:0003124,6.94e-08,7;UBERON:0000966,4.86e-07,6;UBERON:0005388,4.86e-07,6;UBERON:0001802,4.86e-07,6;UBERON:0001264,9.72e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,0.697801167972428,17.9121925146741,10.2869121509097,4.33182235360163,4.63956326019082,0,0,0,0,1.84681587115182,2.04000691244253,0.626909442956176,2.28988789704845,0.821246550437305,0.502170558379211,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.767175371061182,0.361439152384566,0,0,0,0,44.7149685186041,59.8669373148923,46.2889320602774,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860509862246441,0.709336764396714,0,1.06748995729705,0.24666754841716,0,0,0,34.2067786477545,65.6840553907199,6.7953215231801,0,0,0,0,0,0,0,0.61417158655884,0.103325781175765,0,0,0,1.43723628363248,0,0.125118519871964,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26304479546337,0,0,0,0.193260853163297,0,0,4.75697453905422,3.31324420803713,8.71454571521388,4.45742536566093,7.82194637714448,7.2995471815166,1.56449532329816,4.5026865673502,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,2.94017422771084,0,0,0,0,0.860919069801795,79.4358961682173,0,0,0,0,1.62904152655162,1.03993478527958,46.1860294480874,23.6498026149157,63.2832861931079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.84917590417525,33.5689253001626,5.7203862940341,5.42941206182667,0,0,9.57377219705534,6.24044621468197,0,0,0,0.142977993658148,8.68194568626309,1.64648067356154,0.325736184293735,0.355391948742546,3.16780749173372,1.50719688529793,0,0.599837947092342,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03275699377971,2.60279707715243,0,1.34013012267479,0.637938751653163,0,0,0,7.85225547002495,14.5049451107306,5.69656549769445,1.24782516918484,0.356857977594324,0,1.7571212248907,0,0,3.10419213877515,0,0.184369168541703,2.5196248195744,51.8873067276263,47.3537924858981,0,0,0,8.79069957194152,6.65741758041988,13.0027826131763,0,0,0,0,0,0,0,0,0.710246901252508,0,0.519254429183621,0.116210378459959,1.45031339509947,0,0.0920809889358963,7.34812468253483,16.9344786246247,6.42509633301178,1.80479845162965,0.231046011313244,0.784349769176855,0,1.37217117560738,1.13733384070897,0,0,0,2.16757150035082,3.01013864312912,0.509752546090077,0,1.79099803777743,0,0,12.5660561307031,15.7447029935859,3.90454073597164,9.99497812982906,0,0,0,0,0,0,1.3864375540318,0.921022048356777,0.137836572484531,1.6113036730241,2.0302337147992,0.511359764496605,0.534192213880424,0.330569830721956,0.192190067365106,0.127612712494584,0.4046311234222,0,0,0,0,0,0,0.55597265731176,0.143124886741991,13.7698596663077,0.949138274156178,0.953150969619124,0,0,4.13664222303718,0,0.179872457583315,1.64722217841633,0.824686816419805,0,0,0,1.95053495635836,0,0,9.00899415292706,0,0,0,0,0,0,0.655894752046633,0.405820753925408,1.239293992399,0.281695602532241,0.286822704408103,0.196498082026242,0,1.41904425628239,0,0,2.65631221636001,12.2477152085744,0,0,0,9.32023627690114,0,0,0,0,0,0,0,0,0,0,0,0,9.82781454372753,0,0,0,0,3.05909926398181,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,10.1413479692505,0,1.19372242368845,0.890894042497916,0,0,0.140669416410513,0,0,14.1454023445756,0,0,1.51159648712566,0,0.123084805461069,0,1.16828856491525,27.2112185506926,0,0,0,0,0,0.371072392647405,0,0,0,1.44999915086959,7.73795448341398,8.89887776024682,8.03718118010984,21.0293457677293,0,1.90987494426621,0,0.120596438625408,0,0,0.295547618953547,2.63262476584767,0,0,4.07836370070124,0,9.91424788868659,9.06552208538699,26.50995874897,5.42301971544263,13.28165104327,2.13213910407454,0,0,0,0,0.19606253431774,0,0,0,0,3.91758739581955,0.565412285735763,0,0,0,0,0,0,0,0.269604531922708,0,0,0,1.9566461893209,1.21390189767046,1.18375320854817,0,1.83643656978294,1.13735843331278,0.300646838828985,0.518440956986236,71.782618252376,73.1492222484852,62.1587178446306,54.9573176955611,0.569219092059585,0,0,2.44980993535944,0,2.09672001890436,0,0.0967563312890851,0,0,0.0969890164884194,4.50106246126651,6.55344148263544,0,0,0.126621591911757,8.21315807486173,0,0.85381197895741,62.7402174087889,1.58499458869517,0,0,0,0,0,0.271808412147228,0,11.423800375268,0.288950589901519,0,0,0,0,12.6185930054071,0,0,0,0,0,0,0.134366944973453,0,3.49487848582361,0.393915911536118,0.247247575143499,0.337017719270924,1.57483970423598,3.89497327502609,0,0,4.50108815702054,1.51293380256957,3.32352270423348,0,0,0,0,0,1.78345599658994,0.739202355635845,0,0,0,0,0,0,0,2.28611152076586,0,0,0.340776043570843,9.40490359617043,0,0,0,0,8.21216821844781,16.9155605356001,0,0.157204305099666,0,0,0,0,9.57511886655273,0,0,0,0,0.628216385000937,0,0,0,0,0.776503360757966,0.496771223531068,8.16256946123762,0.74988244777264,1.66814029295813,0,42.1125817259727,34.6567830297092,4.92731497276806,0.298509605773748,0.233713309847224,0,0,0,0,0,0,0.621748802331122,0,0.318593534327405,0,0.155262956876259,0,5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| ||
|short_description=p1@STRA6 | |||
}} | }} |
Latest revision as of 00:44, 19 September 2015
Short description: | p1@STRA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_STRA6_5end |
Coexpression cluster: | C2348_gastric_Iris_retina_papillotubular_neuroblastoma_Ciliary_embryonic |
Association with transcript: | 0bp_to_ENST00000536129_5end |
EntrezGene: | STRA6 |
HGNC: | 30650 |
UniProt: | F5GYG1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.87e-10 | 19 |
neurectodermal cell | 7.17e-09 | 59 |
germ line cell | 1.76e-07 | 7 |
germ cell | 1.76e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
sense organ | 4.68e-15 | 24 |
sensory system | 4.68e-15 | 24 |
entire sense organ system | 4.68e-15 | 24 |
eye | 6.84e-15 | 21 |
visual system | 6.84e-15 | 21 |
camera-type eye | 4.56e-14 | 20 |
simple eye | 4.56e-14 | 20 |
immature eye | 4.56e-14 | 20 |
ocular region | 4.56e-14 | 20 |
eyeball of camera-type eye | 4.56e-14 | 20 |
optic cup | 4.56e-14 | 20 |
optic vesicle | 4.56e-14 | 20 |
eye primordium | 4.56e-14 | 20 |
face | 2.91e-12 | 22 |
pigment epithelium of eye | 3.25e-11 | 11 |
ectodermal placode | 5.55e-10 | 31 |
extraembryonic membrane | 8.60e-10 | 14 |
membranous layer | 8.60e-10 | 14 |
extraembryonic structure | 1.67e-09 | 24 |
vasculature of organ | 7.44e-09 | 11 |
anterior segment of eyeball | 7.73e-09 | 14 |
vasculature of eye | 4.83e-08 | 6 |
uvea | 4.83e-08 | 6 |
vasculature of head | 4.83e-08 | 6 |
chorion | 6.94e-08 | 7 |
retina | 4.86e-07 | 6 |
photoreceptor array | 4.86e-07 | 6 |
posterior segment of eyeball | 4.86e-07 | 6 |
pancreas | 9.72e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 8.60e-11 | 22 |
germ cell cancer | 8.60e-11 | 22 |
cell type cancer | 2.10e-08 | 143 |