FFCP PHASE1:Hg19::chr21:47551979..47551997,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt=Q6FHW5 | |UniProt=Q6FHW5 | ||
|association_with_transcript=196bp_to_CR536573_5end | |association_with_transcript=196bp_to_CR536573_5end | ||
|cluster_id=chr21:47551979..47551997,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_20_at_COL6A2_5end | |description=CAGE_peak_20_at_COL6A2_5end | ||
|id=chr21:47551979..47551997,+ | |id=chr21:47551979..47551997,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.30e-41!180;CL:0000057!7.08e-27!75;CL:0000680!1.69e-18!57;CL:0000056!1.69e-18!57;CL:0000355!1.69e-18!57;CL:0000187!8.20e-18!54;CL:0000183!3.37e-17!59;CL:0000393!7.43e-17!60;CL:0000211!7.43e-17!60;CL:0000048!1.79e-16!430;CL:0000723!2.09e-15!436;CL:0000034!2.49e-15!444;CL:0000192!1.86e-14!42;CL:0000514!1.86e-14!42;CL:0002620!2.99e-12!23;CL:0000359!1.71e-10!32;CL:0002371!3.64e-09!591;CL:0002320!1.13e-07!365;CL:0000499!1.48e-07!27;CL:0000144!3.07e-07!625;CL:0002570!5.90e-07!8 | |ontology_enrichment_celltype=CL:0000055!1.30e-41!180;CL:0000057!7.08e-27!75;CL:0000680!1.69e-18!57;CL:0000056!1.69e-18!57;CL:0000355!1.69e-18!57;CL:0000187!8.20e-18!54;CL:0000183!3.37e-17!59;CL:0000393!7.43e-17!60;CL:0000211!7.43e-17!60;CL:0000048!1.79e-16!430;CL:0000723!2.09e-15!436;CL:0000034!2.49e-15!444;CL:0000192!1.86e-14!42;CL:0000514!1.86e-14!42;CL:0002620!2.99e-12!23;CL:0000359!1.71e-10!32;CL:0002371!3.64e-09!591;CL:0002320!1.13e-07!365;CL:0000499!1.48e-07!27;CL:0000144!3.07e-07!625;CL:0002570!5.90e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.63e-13;23!CL:0002570;4.86e-11;8!CL:0000723;2.24e-10;61!CL:0000134;4.54e-10;55!CL:0000048;3.79e-09;58!CL:0002320;1.95e-08;188!CL:0002559;3.45e-08;5!CL:0000034;3.54e-08;69!CL:0000499;3.82e-08;28!CL:0000057;3.79e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.03e-19,76;CL:0000048,8.86e-19,427;CL:0000723,4.46e-18,433;CL:0000034,3.57e-17,441;CL:0002320,1.43e-13,361;CL:0002620,2.73e-13,23;CL:0002570,4.98e-11,8;CL:0000187,7.74e-11,55;CL:0000134,2.99e-10,354;CL:0000680,6.74e-10,58;CL:0000056,6.74e-10,58;CL:0000355,6.74e-10,58;CL:0000393,7.08e-10,61;CL:0000211,7.08e-10,61;CL:0000219,2.86e-08,386;CL:0002559,3.62e-08,5;CL:0000499,4.61e-08,28;CL:0000192,7.05e-08,43;CL:0000514,7.05e-08,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!7.45e-08!14 | |ontology_enrichment_disease=DOID:2394!7.45e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:17;2.79e-07;5!DOID:450;2.79e-07;5!DOID:66;2.79e-07;5!DOID:423;2.79e-07;5!DOID:0080000;2.79e-07;5!DOID:11722;2.79e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.50e-07,5;DOID:450,2.50e-07,5;DOID:66,2.50e-07,5;DOID:423,2.50e-07,5;DOID:0080000,2.50e-07,5;DOID:11722,2.50e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.59e-23!83;UBERON:0002329!2.59e-23!83;UBERON:0003077!2.59e-23!83;UBERON:0003059!2.59e-23!83;UBERON:0007282!2.59e-23!83;UBERON:0009618!2.59e-23!83;UBERON:0007285!2.59e-23!83;UBERON:0004290!2.76e-22!70;UBERON:0000486!6.00e-18!82;UBERON:0001134!3.21e-17!61;UBERON:0002036!3.21e-17!61;UBERON:0003082!3.21e-17!61;UBERON:0002385!5.54e-17!63;UBERON:0001015!5.54e-17!63;UBERON:0000383!5.54e-17!63;UBERON:0005256!1.55e-16!143;UBERON:0002199!2.26e-12!45;UBERON:0002416!2.26e-12!45;UBERON:0003102!7.75e-12!95;UBERON:0002100!5.44e-11!216;UBERON:0002097!2.34e-09!40;UBERON:0000475!1.27e-08!365;UBERON:0001013!1.95e-08!14;UBERON:0003104!3.20e-08!238;UBERON:0009142!3.20e-08!238;UBERON:0002384!4.30e-08!375;UBERON:0001637!3.16e-07!42;UBERON:0003509!3.16e-07!42;UBERON:0004572!3.16e-07!42;UBERON:0002067!6.98e-07!9;UBERON:0004016!6.98e-07!9;UBERON:0010083!6.98e-07!9;UBERON:0004573!8.99e-07!33;UBERON:0004571!8.99e-07!33 | |ontology_enrichment_uberon=UBERON:0000914!2.59e-23!83;UBERON:0002329!2.59e-23!83;UBERON:0003077!2.59e-23!83;UBERON:0003059!2.59e-23!83;UBERON:0007282!2.59e-23!83;UBERON:0009618!2.59e-23!83;UBERON:0007285!2.59e-23!83;UBERON:0004290!2.76e-22!70;UBERON:0000486!6.00e-18!82;UBERON:0001134!3.21e-17!61;UBERON:0002036!3.21e-17!61;UBERON:0003082!3.21e-17!61;UBERON:0002385!5.54e-17!63;UBERON:0001015!5.54e-17!63;UBERON:0000383!5.54e-17!63;UBERON:0005256!1.55e-16!143;UBERON:0002199!2.26e-12!45;UBERON:0002416!2.26e-12!45;UBERON:0003102!7.75e-12!95;UBERON:0002100!5.44e-11!216;UBERON:0002097!2.34e-09!40;UBERON:0000475!1.27e-08!365;UBERON:0001013!1.95e-08!14;UBERON:0003104!3.20e-08!238;UBERON:0009142!3.20e-08!238;UBERON:0002384!4.30e-08!375;UBERON:0001637!3.16e-07!42;UBERON:0003509!3.16e-07!42;UBERON:0004572!3.16e-07!42;UBERON:0002067!6.98e-07!9;UBERON:0004016!6.98e-07!9;UBERON:0010083!6.98e-07!9;UBERON:0004573!8.99e-07!33;UBERON:0004571!8.99e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;7.99e-13;14!UBERON:0002199;7.26e-12;46!UBERON:0002416;7.26e-12;46!UBERON:0003102;7.34e-10;50!UBERON:0002097;1.28e-09;41!UBERON:0004905;5.18e-09;8!UBERON:0000982;5.18e-09;8!UBERON:0004770;5.18e-09;8!UBERON:0002073;3.45e-08;5!UBERON:0002072;5.18e-08;5!UBERON:0011135;1.33e-07;5!UBERON:0002216;1.33e-07;5!UBERON:0011134;1.33e-07;5!UBERON:0002209;1.33e-07;5!UBERON:0002213;1.33e-07;5!UBERON:0007844;1.33e-07;5!UBERON:0011138;1.33e-07;5!UBERON:0001130;1.33e-07;5!UBERON:0001066;1.33e-07;5!UBERON:0001468;1.33e-07;5!UBERON:0002067;2.15e-07;9!UBERON:0002384;2.41e-07;198 | |||
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| ||
|short_description=p20@COL6A2 | |short_description=p20@COL6A2 | ||
}} | }} |
Latest revision as of 23:11, 18 September 2015
Short description: | p20@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | 196bp_to_CR536573_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | Q6FHW5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.03e-19 | 76 |
multi fate stem cell | 8.86e-19 | 427 |
somatic stem cell | 4.46e-18 | 433 |
stem cell | 3.57e-17 | 441 |
connective tissue cell | 1.43e-13 | 361 |
skin fibroblast | 2.73e-13 | 23 |
mesenchymal stem cell of adipose | 4.98e-11 | 8 |
muscle cell | 7.74e-11 | 55 |
mesenchymal cell | 2.99e-10 | 354 |
muscle precursor cell | 6.74e-10 | 58 |
myoblast | 6.74e-10 | 58 |
multi-potent skeletal muscle stem cell | 6.74e-10 | 58 |
electrically responsive cell | 7.08e-10 | 61 |
electrically active cell | 7.08e-10 | 61 |
motile cell | 2.86e-08 | 386 |
hair follicle cell | 3.62e-08 | 5 |
stromal cell | 4.61e-08 | 28 |
smooth muscle cell | 7.05e-08 | 43 |
smooth muscle myoblast | 7.05e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.50e-07 | 5 |
myotonic disease | 2.50e-07 | 5 |
muscle tissue disease | 2.50e-07 | 5 |
myopathy | 2.50e-07 | 5 |
muscular disease | 2.50e-07 | 5 |
myotonic dystrophy | 2.50e-07 | 5 |