FFCP PHASE1:Hg19::chr1:173886399..173886407,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=462 | |EntrezGene=462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=775 | |HGNC=775 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=46bp_to_ENST00000494024_5end | |association_with_transcript=46bp_to_ENST00000494024_5end | ||
|cluster_id=chr1:173886399..173886407,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_8_at_SERPINC1_5end | |description=CAGE_peak_8_at_SERPINC1_5end | ||
|id=chr1:173886399..173886407,- | |id=chr1:173886399..173886407,- | ||
|ontology_enrichment_celltype=CL:0000181!1.94e-42!12;CL:0000417!1.94e-42!12;CL:0000668!1.94e-42!12;CL:0000414!1.94e-42!12;CL:0000412!1.94e-42!12;CL:0000182!1.94e-42!12;CL:0000039!5.82e-09!7;CL:0000586!5.82e-09!7;CL:0000223!1.84e-08!59 | |ontology_enrichment_celltype=CL:0000181!1.94e-42!12;CL:0000417!1.94e-42!12;CL:0000668!1.94e-42!12;CL:0000414!1.94e-42!12;CL:0000412!1.94e-42!12;CL:0000182!1.94e-42!12;CL:0000039!5.82e-09!7;CL:0000586!5.82e-09!7;CL:0000223!1.84e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.21e-33;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.21e-33,12;CL:0000223,2.81e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;8.01e-21;11!UBERON:0009497;9.61e-18;13!UBERON:0001041;4.43e-08;30!UBERON:0003104;4.43e-08;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!2.72e-47!19;UBERON:0006925!2.72e-47!19;UBERON:0008836!2.72e-47!19;UBERON:0005057!2.38e-43!26;UBERON:0008835!8.83e-41!22;UBERON:0003894!8.83e-41!22;UBERON:0009854!5.49e-39!23;UBERON:0007499!7.91e-36!25;UBERON:0009497!7.91e-36!25;UBERON:0000015!7.91e-36!25;UBERON:0002423!7.91e-36!25;UBERON:0006235!7.91e-36!25;UBERON:0004161!7.91e-36!25;UBERON:0009856!1.97e-34!26;UBERON:0002365!8.58e-29!31;UBERON:0002330!8.58e-29!31;UBERON:0002368!1.94e-25!35;UBERON:0005172!4.12e-20!55;UBERON:0005173!4.12e-20!55;UBERON:0000949!1.18e-19!45;UBERON:0002417!4.70e-18!61;UBERON:0000916!4.70e-18!61;UBERON:0003929!2.85e-16!54;UBERON:0002530!7.77e-15!59;UBERON:0001041!6.57e-11!98;UBERON:0005911!1.78e-10!82;UBERON:0005177!6.50e-10!107;UBERON:0009569!2.45e-09!113;UBERON:0002405!4.52e-09!115;UBERON:0000466!2.83e-08!126;UBERON:0000077!5.44e-08!130;UBERON:0004921!5.44e-08!129;UBERON:0004185!5.44e-08!129;UBERON:0003914!4.81e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;8.87e-47;19!UBERON:0006925;8.87e-47;19!UBERON:0002423;1.20e-35;25!UBERON:0002365;4.04e-27;31!UBERON:0002330;4.04e-27;31!UBERON:0002368;1.78e-25;33!UBERON:0000949;3.07e-17;43!UBERON:0005172;9.77e-12;52!UBERON:0005173;9.77e-12;52!UBERON:0002417;2.34e-09;58!UBERON:0000916;2.34e-09;58!UBERON:0002530;5.93e-09;57!UBERON:0001007;1.85e-08;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,8.87e-47,19;UBERON:0006925,8.87e-47,19;UBERON:0008836,8.87e-47,19;UBERON:0008835,1.87e-40,22;UBERON:0003894,1.87e-40,22;UBERON:0009854,1.03e-38,23;UBERON:0007499,1.20e-35,25;UBERON:0009497,1.20e-35,25;UBERON:0000015,1.20e-35,25;UBERON:0002423,1.20e-35,25;UBERON:0006235,1.20e-35,25;UBERON:0004161,1.20e-35,25;UBERON:0009856,2.74e-34,26;UBERON:0002365,8.22e-29,31;UBERON:0002330,8.22e-29,31;UBERON:0002368,1.49e-25,35;UBERON:0000949,6.24e-20,45;UBERON:0003929,1.21e-16,54;UBERON:0005172,1.21e-16,54;UBERON:0005173,1.21e-16,54;UBERON:0002530,3.01e-15,59;UBERON:0002417,5.37e-15,60;UBERON:0000916,5.37e-15,60;UBERON:0005911,5.27e-11,82;UBERON:0001041,2.24e-10,87;UBERON:0005177,6.05e-09,101;UBERON:0009569,4.56e-08,112;UBERON:0003914,1.01e-07,117;UBERON:0004921,1.36e-07,118;UBERON:0005256,2.09e-07,122 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.6185573125845,8.84544495009863,8.27105869353966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.38854272215878,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.81393546447267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46112780877612,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,1.15382201733633,0.808842526250219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8707309279247,5.30027555648885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.6185573125845,8.84544495009863,8.27105869353966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.38854272215878,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.81393546447267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46112780877612,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,1.15382201733633,0.808842526250219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8707309279247,5.30027555648885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@SERPINC1 | |short_description=p8@SERPINC1 | ||
}} | }} |
Latest revision as of 18:25, 18 September 2015
Short description: | p8@SERPINC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SERPINC1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 46bp_to_ENST00000494024_5end |
EntrezGene: | SERPINC1 |
HGNC: | 775 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.21e-33 | 12 |
endodermal cell | 2.81e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 8.87e-47 | 19 |
digestive gland | 8.87e-47 | 19 |
liver bud | 8.87e-47 | 19 |
hepatic diverticulum | 1.87e-40 | 22 |
liver primordium | 1.87e-40 | 22 |
digestive tract diverticulum | 1.03e-38 | 23 |
epithelial sac | 1.20e-35 | 25 |
epithelium of foregut-midgut junction | 1.20e-35 | 25 |
anatomical boundary | 1.20e-35 | 25 |
hepatobiliary system | 1.20e-35 | 25 |
foregut-midgut junction | 1.20e-35 | 25 |
septum transversum | 1.20e-35 | 25 |
sac | 2.74e-34 | 26 |
exocrine gland | 8.22e-29 | 31 |
exocrine system | 8.22e-29 | 31 |
endocrine gland | 1.49e-25 | 35 |
endocrine system | 6.24e-20 | 45 |
gut epithelium | 1.21e-16 | 54 |
abdomen element | 1.21e-16 | 54 |
abdominal segment element | 1.21e-16 | 54 |
gland | 3.01e-15 | 59 |
abdominal segment of trunk | 5.37e-15 | 60 |
abdomen | 5.37e-15 | 60 |
endo-epithelium | 5.27e-11 | 82 |
foregut | 2.24e-10 | 87 |
trunk region element | 6.05e-09 | 101 |
subdivision of trunk | 4.56e-08 | 112 |
epithelial tube | 1.01e-07 | 117 |
subdivision of digestive tract | 1.36e-07 | 118 |
trunk mesenchyme | 2.09e-07 | 122 |