FFCP PHASE1:Hg19::chr8:6334891..6334898,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79648 | |EntrezGene=79648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6954 | |HGNC=6954 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=11bp_to_ENST00000521129_5end | |association_with_transcript=11bp_to_ENST00000521129_5end | ||
|cluster_id=chr8:6334891..6334898,+ | |||
|coexpression_cluster_id=C46 | |coexpression_cluster_id=C46 | ||
|description=CAGE_peak_4_at_MCPH1_5end | |description=CAGE_peak_4_at_MCPH1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000764!1.07e-13!2;CL:0000765!1.07e-13!2;CL:0000050!1.07e-13!2;CL:0000038!1.07e-13!2;CL:0000558!1.07e-13!2;CL:0000547!1.07e-13!2;CL:0000549!1.07e-13!2;CL:0000550!1.07e-13!2;CL:0000552!1.07e-13!2 | |ontology_enrichment_celltype=CL:0000764!1.07e-13!2;CL:0000765!1.07e-13!2;CL:0000050!1.07e-13!2;CL:0000038!1.07e-13!2;CL:0000558!1.07e-13!2;CL:0000547!1.07e-13!2;CL:0000549!1.07e-13!2;CL:0000550!1.07e-13!2;CL:0000552!1.07e-13!2 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.08e-32!7;UBERON:0002370!6.73e-26!4;UBERON:0005058!6.73e-26!4;UBERON:0009113!6.73e-26!4;UBERON:0003295!6.73e-26!4;UBERON:0005562!6.73e-26!4;UBERON:0003351!1.22e-17!6;UBERON:0000974!5.41e-11!10;UBERON:0003408!5.41e-11!10;UBERON:0001042!5.41e-11!10;UBERON:0009145!5.41e-11!10;UBERON:0006562!4.42e-10!11;UBERON:0009722!4.42e-10!11;UBERON:0007690!4.42e-10!11;UBERON:0002106!1.81e-09!3;UBERON:0004854!1.81e-09!3;UBERON:0009034!1.81e-09!3;UBERON:0002095!1.81e-09!3;UBERON:0004782!1.81e-09!3;UBERON:0003281!1.81e-09!3;UBERON:0009664!1.81e-09!3;UBERON:0002296!1.81e-09!3;UBERON:0005602!1.81e-09!3;UBERON:0001179!1.81e-09!3;UBERON:0006293!1.81e-09!3;UBERON:0005057!2.82e-09!26;UBERON:0008814!1.22e-07!15 | |ontology_enrichment_uberon=UBERON:0004177!2.08e-32!7;UBERON:0002370!6.73e-26!4;UBERON:0005058!6.73e-26!4;UBERON:0009113!6.73e-26!4;UBERON:0003295!6.73e-26!4;UBERON:0005562!6.73e-26!4;UBERON:0003351!1.22e-17!6;UBERON:0000974!5.41e-11!10;UBERON:0003408!5.41e-11!10;UBERON:0001042!5.41e-11!10;UBERON:0009145!5.41e-11!10;UBERON:0006562!4.42e-10!11;UBERON:0009722!4.42e-10!11;UBERON:0007690!4.42e-10!11;UBERON:0002106!1.81e-09!3;UBERON:0004854!1.81e-09!3;UBERON:0009034!1.81e-09!3;UBERON:0002095!1.81e-09!3;UBERON:0004782!1.81e-09!3;UBERON:0003281!1.81e-09!3;UBERON:0009664!1.81e-09!3;UBERON:0002296!1.81e-09!3;UBERON:0005602!1.81e-09!3;UBERON:0001179!1.81e-09!3;UBERON:0006293!1.81e-09!3;UBERON:0005057!2.82e-09!26;UBERON:0008814!1.22e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.75e-130;2!UBERON:0005058;1.75e-130;2!UBERON:0009113;1.75e-130;2!UBERON:0004177;3.74e-53;5!UBERON:0005057;3.74e-53;5!UBERON:0000077;6.90e-11;27!UBERON:0002405;6.90e-11;27!UBERON:0002368;2.59e-07;33!UBERON:0002390;2.60e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0002370;1.75e-130;2!UBERON:0005058;1.75e-130;2!UBERON:0009113;1.75e-130;2!UBERON:0004177;3.74e-53;5!UBERON:0005057;3.74e-53;5!UBERON:0000077;6.90e-11;27!UBERON:0002405;6.90e-11;27!UBERON:0002368;2.59e-07;33!UBERON:0002390;2.60e-07;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.67e-66,4;UBERON:0005058,4.67e-66,4;UBERON:0009113,4.67e-66,4;UBERON:0003295,4.67e-66,4;UBERON:0005562,4.67e-66,4;UBERON:0003351,1.52e-44,6;UBERON:0004177,2.18e-38,7;UBERON:0005057,2.18e-38,7;UBERON:0000974,2.72e-27,10;UBERON:0003408,2.72e-27,10;UBERON:0001042,2.72e-27,10;UBERON:0009145,2.72e-27,10;UBERON:0006562,6.20e-25,11;UBERON:0009722,6.20e-25,11;UBERON:0007690,6.20e-25,11;UBERON:0008814,9.75e-16,18;UBERON:0001557,5.66e-15,19;UBERON:0004807,1.54e-10,28;UBERON:0000077,3.24e-10,29;UBERON:0002368,1.18e-08,35;UBERON:0000949,5.75e-07,45 | |||
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|short_description=p4@MCPH1 | |short_description=p4@MCPH1 | ||
}} | }} |
Latest revision as of 18:18, 18 September 2015
Short description: | p4@MCPH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MCPH1_5end |
Coexpression cluster: | C46_acute_Hodgkin_thymus_CD8_chronic_CD4_merkel |
Association with transcript: | 11bp_to_ENST00000521129_5end |
EntrezGene: | MCPH1 |
HGNC: | 6954 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 4.67e-66 | 4 |
hemolymphoid system gland | 4.67e-66 | 4 |
thymic region | 4.67e-66 | 4 |
pharyngeal gland | 4.67e-66 | 4 |
thymus primordium | 4.67e-66 | 4 |
pharyngeal epithelium | 1.52e-44 | 6 |
hemopoietic organ | 2.18e-38 | 7 |
immune organ | 2.18e-38 | 7 |
neck | 2.72e-27 | 10 |
gland of gut | 2.72e-27 | 10 |
chordate pharynx | 2.72e-27 | 10 |
pharyngeal region of foregut | 2.72e-27 | 10 |
pharynx | 6.20e-25 | 11 |
entire pharyngeal arch endoderm | 6.20e-25 | 11 |
early pharyngeal endoderm | 6.20e-25 | 11 |
pharyngeal arch system | 9.75e-16 | 18 |
upper respiratory tract | 5.66e-15 | 19 |
respiratory system epithelium | 1.54e-10 | 28 |
mixed endoderm/mesoderm-derived structure | 3.24e-10 | 29 |
endocrine gland | 1.18e-08 | 35 |
endocrine system | 5.75e-07 | 45 |