FFCP PHASE1:Hg19::chr7:44163126..44163155,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5425 | |EntrezGene=5425 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9176 | |HGNC=9176 | ||
|TSSclassifier=strong | |||
|UniProt=C9JHC7,P49005,A4D2J4,B2R5S4 | |UniProt=C9JHC7,P49005,A4D2J4,B2R5S4 | ||
|association_with_transcript=0bp_to_ENST00000436844,ENST00000452185,ENST00000470867,ENST00000496539,NM_001127218,NM_006230,uc003tkf.3,uc010kya.2_5end | |association_with_transcript=0bp_to_ENST00000436844,ENST00000452185,ENST00000470867,ENST00000496539,NM_001127218,NM_006230,uc003tkf.3,uc010kya.2_5end | ||
|cluster_id=chr7:44163126..44163155,- | |||
|coexpression_cluster_id=C685 | |||
|description=CAGE_peak_1_at_POLD2_5end | |description=CAGE_peak_1_at_POLD2_5end | ||
|id=chr7:44163126..44163155,- | |id=chr7:44163126..44163155,- | ||
|ontology_enrichment_celltype=CL:0000066!1.84e-15!254;CL:0002321!6.59e-14!248;CL:0000220!6.89e-14!246;CL:0000055!5.91e-12!180;CL:0000548!3.00e-09!679;CL:0000004!3.00e-09!679;CL:0000255!3.00e-09!679;CL:0000222!4.33e-09!119;CL:0000012!9.92e-09!682;CL:0000183!2.15e-08!59;CL:0000187!6.79e-07!54;CL:0000680!7.72e-07!57;CL:0000056!7.72e-07!57;CL:0000355!7.72e-07!57 | |ontology_enrichment_celltype=CL:0000066!1.84e-15!254;CL:0002321!6.59e-14!248;CL:0000220!6.89e-14!246;CL:0000055!5.91e-12!180;CL:0000548!3.00e-09!679;CL:0000004!3.00e-09!679;CL:0000255!3.00e-09!679;CL:0000222!4.33e-09!119;CL:0000012!9.92e-09!682;CL:0000183!2.15e-08!59;CL:0000187!6.79e-07!54;CL:0000680!7.72e-07!57;CL:0000056!7.72e-07!57;CL:0000355!7.72e-07!57 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.53e-15,253;CL:0002321,4.89e-14,250;CL:0000222,3.52e-09,121;CL:0000187,9.48e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.59e-15!235;DOID:14566!9.02e-15!239;DOID:0050687!8.68e-11!143;DOID:305!3.72e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.59e-15,235;DOID:14566,9.02e-15,239;DOID:0050687,8.68e-11,143;DOID:305,3.72e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.15e-16!238;UBERON:0009142!1.15e-16!238;UBERON:0002100!1.69e-14!216;UBERON:0000119!3.89e-13!312;UBERON:0000483!1.19e-12!309;UBERON:0000475!2.63e-12!365;UBERON:0000481!3.12e-12!347;UBERON:0000486!2.50e-11!82;UBERON:0005256!2.57e-11!143;UBERON:0004290!4.22e-11!70;UBERON:0000914!5.92e-10!83;UBERON:0002329!5.92e-10!83;UBERON:0003077!5.92e-10!83;UBERON:0003059!5.92e-10!83;UBERON:0007282!5.92e-10!83;UBERON:0009618!5.92e-10!83;UBERON:0007285!5.92e-10!83;UBERON:0003914!9.92e-10!118;UBERON:0000490!2.86e-09!138;UBERON:0001048!9.42e-09!168;UBERON:0000072!1.92e-08!46;UBERON:0001134!1.06e-07!61;UBERON:0002036!1.06e-07!61;UBERON:0003082!1.06e-07!61;UBERON:0005177!1.29e-07!107;UBERON:0001041!1.51e-07!98;UBERON:0009569!2.36e-07!113;UBERON:0008947!2.40e-07!38;UBERON:0003258!2.40e-07!38;UBERON:0002385!5.41e-07!63;UBERON:0001015!5.41e-07!63;UBERON:0000383!5.41e-07!63;UBERON:0000077!5.75e-07!130;UBERON:0004872!7.48e-07!84;UBERON:0000064!8.33e-07!219 | |ontology_enrichment_uberon=UBERON:0003104!1.15e-16!238;UBERON:0009142!1.15e-16!238;UBERON:0002100!1.69e-14!216;UBERON:0000119!3.89e-13!312;UBERON:0000483!1.19e-12!309;UBERON:0000475!2.63e-12!365;UBERON:0000481!3.12e-12!347;UBERON:0000486!2.50e-11!82;UBERON:0005256!2.57e-11!143;UBERON:0004290!4.22e-11!70;UBERON:0000914!5.92e-10!83;UBERON:0002329!5.92e-10!83;UBERON:0003077!5.92e-10!83;UBERON:0003059!5.92e-10!83;UBERON:0007282!5.92e-10!83;UBERON:0009618!5.92e-10!83;UBERON:0007285!5.92e-10!83;UBERON:0003914!9.92e-10!118;UBERON:0000490!2.86e-09!138;UBERON:0001048!9.42e-09!168;UBERON:0000072!1.92e-08!46;UBERON:0001134!1.06e-07!61;UBERON:0002036!1.06e-07!61;UBERON:0003082!1.06e-07!61;UBERON:0005177!1.29e-07!107;UBERON:0001041!1.51e-07!98;UBERON:0009569!2.36e-07!113;UBERON:0008947!2.40e-07!38;UBERON:0003258!2.40e-07!38;UBERON:0002385!5.41e-07!63;UBERON:0001015!5.41e-07!63;UBERON:0000383!5.41e-07!63;UBERON:0000077!5.75e-07!130;UBERON:0004872!7.48e-07!84;UBERON:0000064!8.33e-07!219 | ||
|ontology_enrichment_uberon_v019=UBERON:0000072;3.03e-08;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,4.32e-15,199;UBERON:0000119,4.16e-13,309;UBERON:0007503,1.04e-12,78;UBERON:0000483,1.27e-12,306;UBERON:0000490,4.57e-12,148;UBERON:0000486,3.65e-11,83;UBERON:0002329,6.47e-11,71;UBERON:0003059,6.47e-11,71;UBERON:0007282,6.47e-11,71;UBERON:0004290,6.47e-11,71;UBERON:0009618,6.47e-11,71;UBERON:0003104,1.43e-10,160;UBERON:0009142,1.43e-10,160;UBERON:0003077,1.45e-10,72;UBERON:0007285,1.45e-10,72;UBERON:0007524,1.65e-10,73;UBERON:0005256,2.09e-10,122;UBERON:0003914,7.75e-10,117;UBERON:0000072,3.06e-08,47;UBERON:0001048,4.69e-08,160;UBERON:0005177,6.56e-08,101;UBERON:0001134,1.49e-07,62;UBERON:0002036,1.49e-07,62;UBERON:0003082,1.49e-07,62;UBERON:0008947,2.40e-07,38;UBERON:0003258,2.40e-07,38;UBERON:0009569,3.20e-07,112;UBERON:0004872,6.09e-07,83;UBERON:0002385,7.28e-07,64;UBERON:0001015,7.28e-07,64;UBERON:0000383,7.28e-07,64;UBERON:0001041,8.05e-07,87 | |||
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18554707233 | ||
|short_description=p1@POLD2 | |short_description=p1@POLD2 | ||
}} | }} |
Latest revision as of 16:44, 18 September 2015
Short description: | p1@POLD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_POLD2_5end |
Coexpression cluster: | C685_Alveolar_Mesenchymal_Renal_Smooth_Hepatic_Fibroblast_Keratocytes |
Association with transcript: | 0bp_to_ENST00000436844, ENST00000452185, ENST00000470867, ENST00000496539, NM_001127218, NM_006230, uc003tkf.3, uc010kya.2_5end |
EntrezGene: | POLD2 |
HGNC: | 9176 |
UniProt: | C9JHC7P49005A4D2J4B2R5S4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.53e-15 | 253 |
embryonic cell | 4.89e-14 | 250 |
mesodermal cell | 3.52e-09 | 121 |
muscle cell | 9.48e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
trunk | 4.32e-15 | 199 |
cell layer | 4.16e-13 | 309 |
epithelial vesicle | 1.04e-12 | 78 |
epithelium | 1.27e-12 | 306 |
unilaminar epithelium | 4.57e-12 | 148 |
multilaminar epithelium | 3.65e-11 | 83 |
somite | 6.47e-11 | 71 |
presomitic mesoderm | 6.47e-11 | 71 |
presumptive segmental plate | 6.47e-11 | 71 |
dermomyotome | 6.47e-11 | 71 |
trunk paraxial mesoderm | 6.47e-11 | 71 |
mesenchyme | 1.43e-10 | 160 |
entire embryonic mesenchyme | 1.43e-10 | 160 |
paraxial mesoderm | 1.45e-10 | 72 |
presumptive paraxial mesoderm | 1.45e-10 | 72 |
dense mesenchyme tissue | 1.65e-10 | 73 |
trunk mesenchyme | 2.09e-10 | 122 |
epithelial tube | 7.75e-10 | 117 |
segment of respiratory tract | 3.06e-08 | 47 |
primordium | 4.69e-08 | 160 |
trunk region element | 6.56e-08 | 101 |
skeletal muscle tissue | 1.49e-07 | 62 |
striated muscle tissue | 1.49e-07 | 62 |
myotome | 1.49e-07 | 62 |
respiratory primordium | 2.40e-07 | 38 |
endoderm of foregut | 2.40e-07 | 38 |
subdivision of trunk | 3.20e-07 | 112 |
splanchnic layer of lateral plate mesoderm | 6.09e-07 | 83 |
muscle tissue | 7.28e-07 | 64 |
musculature | 7.28e-07 | 64 |
musculature of body | 7.28e-07 | 64 |
foregut | 8.05e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.59e-15 | 235 |
disease of cellular proliferation | 9.02e-15 | 239 |
cell type cancer | 8.68e-11 | 143 |
carcinoma | 3.72e-07 | 106 |