FFCP PHASE1:Hg19::chr21:43816152..43816182,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64699 | |EntrezGene=64699 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11877 | |HGNC=11877 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000433957_5end | |association_with_transcript=0bp_to_ENST00000433957_5end | ||
|cluster_id=chr21:43816152..43816182,- | |||
|coexpression_cluster_id=C2633 | |coexpression_cluster_id=C2633 | ||
|description=CAGE_peak_1_at_TMPRSS3_5end | |description=CAGE_peak_1_at_TMPRSS3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000077;6.60e-08;19 | |ontology_enrichment_celltype_v019=CL:0000077;6.60e-08;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000077,4.62e-08,19;CL:0000066,2.17e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.42e-18;29 | |ontology_enrichment_development_v019=UBERON:0008947;4.42e-18;29 | ||
|ontology_enrichment_disease=DOID:305!4.21e-19!106;DOID:0050687!1.20e-12!143;DOID:162!1.20e-09!235;DOID:14566!4.55e-09!239;DOID:299!2.89e-08!25 | |ontology_enrichment_disease=DOID:305!4.21e-19!106;DOID:0050687!1.20e-12!143;DOID:162!1.20e-09!235;DOID:14566!4.55e-09!239;DOID:299!2.89e-08!25 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:305,4.19e-20,106;DOID:0050687,1.32e-12,143;DOID:162,1.38e-11,235;DOID:14566,4.06e-11,239 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001737;3.53e-26;9!UBERON:0001557;3.53e-26;9!UBERON:0002294;1.24e-09;7!UBERON:0001173;1.24e-09;7!UBERON:0000065;2.68e-09;44!UBERON:0000072;4.88e-09;37 | |ontology_enrichment_uberon_v019=UBERON:0001737;3.53e-26;9!UBERON:0001557;3.53e-26;9!UBERON:0002294;1.24e-09;7!UBERON:0001173;1.24e-09;7!UBERON:0000065;2.68e-09;44!UBERON:0000072;4.88e-09;37 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.58e-26,9;UBERON:0001557,8.29e-14,19;UBERON:0008947,7.49e-13,38;UBERON:0003258,7.49e-13,38;UBERON:0001041,9.77e-11,87;UBERON:0000065,3.54e-09,54;UBERON:0000072,2.06e-08,47;UBERON:0001007,3.29e-08,145;UBERON:0001555,3.29e-08,145;UBERON:0007026,3.29e-08,145;UBERON:0004119,1.65e-07,160;UBERON:0000925,1.65e-07,160;UBERON:0006595,1.65e-07,160;UBERON:0002294,1.66e-07,9;UBERON:0001173,1.66e-07,9;UBERON:0004912,1.66e-07,9;UBERON:0011216,3.38e-07,223;UBERON:0004921,4.24e-07,118 | |||
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| ||
|short_description=p1@TMPRSS3 | |short_description=p1@TMPRSS3 | ||
}} | }} |
Latest revision as of 14:18, 18 September 2015
Short description: | p1@TMPRSS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMPRSS3_5end |
Coexpression cluster: | C2633_smallcell_Hep2_gall_cervical_splenic_mesothelioma_serous |
Association with transcript: | 0bp_to_ENST00000433957_5end |
EntrezGene: | TMPRSS3 |
HGNC: | 11877 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 4.62e-08 | 19 |
epithelial cell | 2.17e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.58e-26 | 9 |
upper respiratory tract | 8.29e-14 | 19 |
respiratory primordium | 7.49e-13 | 38 |
endoderm of foregut | 7.49e-13 | 38 |
foregut | 9.77e-11 | 87 |
respiratory tract | 3.54e-09 | 54 |
segment of respiratory tract | 2.06e-08 | 47 |
digestive system | 3.29e-08 | 145 |
digestive tract | 3.29e-08 | 145 |
primitive gut | 3.29e-08 | 145 |
endoderm-derived structure | 1.65e-07 | 160 |
endoderm | 1.65e-07 | 160 |
presumptive endoderm | 1.65e-07 | 160 |
biliary system | 1.66e-07 | 9 |
biliary tree | 1.66e-07 | 9 |
biliary bud | 1.66e-07 | 9 |
organ system subdivision | 3.38e-07 | 223 |
subdivision of digestive tract | 4.24e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.19e-20 | 106 |
cell type cancer | 1.32e-12 | 143 |
cancer | 1.38e-11 | 235 |
disease of cellular proliferation | 4.06e-11 | 239 |