FFCP PHASE1:Hg19::chr12:48152883..48152898,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10411 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16629 | |||
|TSSclassifier=strong | |||
|UniProt=Q99777 | |||
|association_with_transcript=0bp_to_NM_001098531,uc001rpz.3,uc001rqb.3,uc009zkr.2_5end | |||
|cluster_id=chr12:48152883..48152898,- | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_7_at_RAPGEF3_5end | |||
|id=chr12:48152883..48152898,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.00e-11;82!UBERON:0005425;4.08e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.09e-23!57;UBERON:0005068!3.09e-23!57;UBERON:0006241!3.09e-23!57;UBERON:0007135!3.09e-23!57;UBERON:0005743!1.05e-19!86;UBERON:0001017!5.01e-19!82;UBERON:0000955!5.69e-19!69;UBERON:0006238!5.69e-19!69;UBERON:0002616!9.10e-19!59;UBERON:0000073!2.78e-18!94;UBERON:0001016!2.78e-18!94;UBERON:0002780!6.37e-18!41;UBERON:0001890!6.37e-18!41;UBERON:0006240!6.37e-18!41;UBERON:0003080!3.61e-17!42;UBERON:0003075!1.24e-16!86;UBERON:0007284!1.24e-16!86;UBERON:0007023!3.77e-16!115;UBERON:0002346!5.40e-15!90;UBERON:0002020!2.57e-14!34;UBERON:0003528!2.57e-14!34;UBERON:0001893!2.60e-14!34;UBERON:0003056!7.13e-14!61;UBERON:0002791!1.30e-13!33;UBERON:0000033!1.91e-13!123;UBERON:0000153!7.10e-13!129;UBERON:0007811!7.10e-13!129;UBERON:0001869!1.09e-12!32;UBERON:0004121!3.33e-12!169;UBERON:0000924!2.46e-11!173;UBERON:0006601!2.46e-11!173;UBERON:0004111!8.90e-11!241;UBERON:0002619!2.65e-10!22;UBERON:0000956!4.61e-09!25;UBERON:0000203!4.61e-09!25;UBERON:0000025!5.69e-09!194;UBERON:0001950!7.15e-09!20;UBERON:0000475!1.54e-08!365;UBERON:0000477!1.78e-08!286;UBERON:0000489!3.22e-08!32;UBERON:0000483!2.62e-07!309;UBERON:0000119!2.71e-07!312;UBERON:0003076!2.76e-07!15;UBERON:0003057!2.76e-07!15;UBERON:0000062!2.93e-07!511;UBERON:0002308!3.62e-07!9;UBERON:0000125!3.62e-07!9;UBERON:0000467!4.09e-07!625;UBERON:0000480!5.16e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;1.92e-34;53!UBERON:0002616;1.92e-34;53!UBERON:0002780;1.26e-32;41!UBERON:0001890;1.26e-32;41!UBERON:0001893;2.50e-26;34!UBERON:0003528;1.53e-25;34!UBERON:0002020;1.53e-25;34!UBERON:0002791;2.22e-25;32!UBERON:0002298;9.93e-22;6!UBERON:0002784;1.18e-21;4!UBERON:0002420;4.97e-21;9!UBERON:0000125;4.97e-21;9!UBERON:0007245;4.97e-21;9!UBERON:0002308;4.97e-21;9!UBERON:0010009;4.97e-21;9!UBERON:0010011;4.97e-21;9!UBERON:0000454;4.97e-21;9!UBERON:0001869;1.08e-20;32!UBERON:0009663;3.43e-19;7!UBERON:0001894;6.76e-19;7!UBERON:0000955;8.72e-18;68!UBERON:0002619;2.99e-17;22!UBERON:0001896;2.25e-16;3!UBERON:0005290;2.25e-16;3!UBERON:0001950;4.35e-15;20!UBERON:0000956;4.39e-15;25!UBERON:0000203;4.39e-15;25!UBERON:0004732;2.99e-14;13!UBERON:0001017;3.33e-14;75!UBERON:0001016;9.75e-13;83!UBERON:0005162;1.87e-12;2!UBERON:0000122;1.87e-12;2!UBERON:0001875;2.40e-12;2!UBERON:0006514;2.40e-12;2!UBERON:0001897;6.44e-12;2!UBERON:0010225;6.44e-12;2!UBERON:0001905;1.70e-11;2!UBERON:0002757;1.70e-11;2!UBERON:0010134;1.70e-11;2!UBERON:0005408;1.70e-11;2!UBERON:0001899;1.70e-11;2!UBERON:0004733;9.07e-11;12!UBERON:0002028;9.07e-11;12!UBERON:0002021;2.82e-10;5!UBERON:0007023;4.59e-10;114!UBERON:0000349;4.96e-10;5!UBERON:0000988;6.02e-08;3!UBERON:0001871;2.72e-07;6!UBERON:0000941;4.08e-07;1!UBERON:0001785;4.08e-07;1!UBERON:0002464;4.08e-07;1!UBERON:0004904;4.08e-07;1!UBERON:0001021;4.08e-07;1!UBERON:0002336;5.26e-07;1!UBERON:0011215;5.26e-07;1!UBERON:0001018;5.26e-07;1!UBERON:0002473;5.26e-07;1!UBERON:0005340;5.26e-07;1!UBERON:0003544;5.26e-07;1!UBERON:0005970;5.26e-07;1!UBERON:0002316;5.26e-07;1!UBERON:0001020;5.26e-07;1!UBERON:0002437;5.26e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.90e-58,56;UBERON:0005068,6.90e-58,56;UBERON:0006241,6.90e-58,56;UBERON:0007135,6.90e-58,56;UBERON:0000073,1.30e-56,53;UBERON:0002616,1.30e-56,53;UBERON:0002780,1.56e-46,41;UBERON:0001890,1.56e-46,41;UBERON:0003080,1.56e-46,41;UBERON:0006240,1.56e-46,41;UBERON:0000955,5.22e-46,68;UBERON:0006238,5.22e-46,68;UBERON:0003075,2.08e-41,82;UBERON:0007284,2.08e-41,82;UBERON:0001017,3.94e-41,81;UBERON:0001016,1.00e-39,89;UBERON:0002346,3.07e-39,86;UBERON:0010371,6.50e-37,104;UBERON:0003056,1.54e-33,61;UBERON:0001893,3.49e-31,34;UBERON:0003528,4.08e-31,34;UBERON:0002020,4.08e-31,34;UBERON:0007023,7.00e-31,114;UBERON:0002791,1.07e-28,32;UBERON:0010314,9.12e-26,132;UBERON:0001869,1.48e-24,32;UBERON:0002298,2.41e-22,6;UBERON:0002784,5.37e-22,4;UBERON:0004121,1.71e-21,171;UBERON:0000924,1.71e-21,171;UBERON:0006601,1.71e-21,171;UBERON:0000125,3.67e-21,9;UBERON:0002308,3.67e-21,9;UBERON:0002420,4.70e-21,9;UBERON:0007245,4.70e-21,9;UBERON:0010009,4.70e-21,9;UBERON:0010011,4.70e-21,9;UBERON:0000454,4.70e-21,9;UBERON:0009663,4.11e-19,7;UBERON:0001894,4.78e-19,7;UBERON:0006222,4.78e-19,7;UBERON:0002619,3.05e-17,22;UBERON:0001896,8.04e-17,3;UBERON:0005290,8.04e-17,3;UBERON:0010096,8.04e-17,3;UBERON:0000025,6.81e-16,192;UBERON:0001950,3.62e-15,20;UBERON:0000956,4.47e-15,25;UBERON:0000203,4.47e-15,25;UBERON:0004732,1.39e-14,13;UBERON:0011216,8.62e-14,223;UBERON:0005162,1.64e-12,2;UBERON:0000122,1.64e-12,2;UBERON:0001875,2.42e-12,2;UBERON:0006514,2.42e-12,2;UBERON:0003076,2.50e-12,15;UBERON:0003057,2.50e-12,15;UBERON:0001897,2.70e-12,2;UBERON:0010225,2.70e-12,2;UBERON:0004111,1.52e-11,240;UBERON:0001905,1.80e-11,2;UBERON:0002757,1.80e-11,2;UBERON:0010134,1.80e-11,2;UBERON:0005408,1.80e-11,2;UBERON:0001899,1.80e-11,2;UBERON:0004733,4.58e-11,12;UBERON:0002028,4.58e-11,12;UBERON:0007277,4.58e-11,12;UBERON:0000483,1.67e-10,306;UBERON:0000119,2.44e-10,309;UBERON:0002021,3.07e-10,5;UBERON:0000349,6.92e-10,5;UBERON:0000988,3.82e-08,3;UBERON:0001871,1.86e-07,6;UBERON:0000941,4.09e-07,1;UBERON:0001785,4.09e-07,1;UBERON:0002464,4.09e-07,1;UBERON:0004904,4.09e-07,1;UBERON:0001021,4.09e-07,1;UBERON:0003902,4.09e-07,1;UBERON:0005425,4.09e-07,1;UBERON:0002336,4.58e-07,1;UBERON:0011215,4.58e-07,1;UBERON:0001018,4.58e-07,1;UBERON:0002473,4.58e-07,1;UBERON:0005340,4.58e-07,1;UBERON:0003544,4.58e-07,1;UBERON:0005970,4.58e-07,1;UBERON:0002316,4.58e-07,1;UBERON:0001020,4.58e-07,1;UBERON:0002437,4.58e-07,1;UBERON:0002038,7.60e-07,1;UBERON:0009661,7.60e-07,1;UBERON:0002950,7.60e-07,1;UBERON:0001891,7.60e-07,1;UBERON:0009616,7.60e-07,1;UBERON:0010286,7.60e-07,1;UBERON:0003112,8.97e-07,1;UBERON:0011158,8.97e-07,1;UBERON:0003128,8.97e-07,1;UBERON:0001703,8.97e-07,1;UBERON:0002241,8.97e-07,1;UBERON:0004761,8.97e-07,1;UBERON:0009617,8.97e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.436882744260345,0,0,0,0,0,0,0.487932798790507,0.246242116153576,0.408001382488506,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0.90361775633475,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0.309706370895104,0,0,0,0,0.645484683583826,1.35426486594342,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0.221729397462564,0,0.261958150995425,0.364295288292542,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0.835979866147242,0.516833518338658,0,0.33472061276467,0,0,0.732186172644509,0,0.81014194788176,0.0892997282840798,0.44905874525234,0.112611480483322,0,0,0.366403487860815,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0.149448680551801,0,0,0,0,0.245668634623536,0,0,0,0,0.718618141816238,0,0,0,0,0.30648779579902,0,0,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,0,1.03056216018252,0,0.168776332241266,0.194874010322397,0,0.0920498986422993,0.161646056818812,0.355009592516614,0,0,0.193260853163297,0.272746120590835,0,0.609868530647977,0,0.348581828608555,0.310983165046111,0,0,0,0.643240938192885,0,0,0,0,0.168584690078102,0,0,0.217879444092406,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,1.1240175325762,0,0,0,0,0,0.231860809950154,0.587043471179108,0,0,0.190254152234598,0.790204397959275,0,0,0,0,0,0,0.283550194484773,0.179117045405697,0.290633938513962,0.766765358330422,0,0.088048434013226,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0.336393253036082,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0.0868836144680828,0.195801157462741,0,0,0.215714200818617,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0.40101294060657,0,0,0,0.131124414959424,0.902399225814824,0.308061348417659,0.784349769176855,0,0.211103257785751,0,0.340187410553031,0.215915916102139,1.54227252690289,0,0.501689773854853,0.254876273045038,3.3243040357149,0.671624264166535,0,0,0.256450125116389,0,0.325378394664303,0.309123034943167,0,0.082509499920588,0,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0.0890320356467374,0.165284915360978,0.384380134730212,0.638063562472921,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0.136499911407986,0.282810863907425,0,0,0.66343897524122,0,0,0,0,0,0.281695602532241,0,0.0982490410131212,0,0,0,0,0,0,0.0962221127255121,0.670302275535787,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0.735120647943095,0,0,0,0,0,0,1.2700414963433,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0.66614393599564,0,0,0.586032717087576,0,0.445773537109913,0,0,0,0.307160702099232,0,1.54736358051564,0.222617410045812,0,0,0,0,0,0.102268682502155,0.246169610922139,0.311039587661807,0.179736702294654,0,0,0.295930216910801,0,0,0.969332746095218,1.02044907978036,0,0,1.57427999993152,0,0,0.508507300585533,0.472775363535873,0.344743373241465,0,0,0,0.60298219312704,0,0,0,0.658156191461918,0,0.278847488557207,0.230850775511391,0,0,0,0,0,0.274792780205587,0.533034776018635,0,0.156980256395025,0,0.225595660617181,0,0,0,0,0.632994193584081,0.489698424477443,0,0.216388639742091,0,0.176915129006678,0,0,0,0,2.6286441862464,0,1.1713222286267,0,0.19566461893209,0,0.394584402849391,0,0,0.189559738885464,0.300646838828985,0,0,0,0.313932918407225,0,0.853828638089378,0,0,0.0979923974143777,0.261177619741208,0.34945333648406,0,0.19351266257817,0,0,0,0,0.225980740780532,0,0.19871461170299,0.569797163602908,0.195551382734803,0,0.426905989478705,0,0.144090417154106,0.114536596165916,0,0,0.124252535565433,0,0,0.104602846312333,0.203996435272644,0,2.40168115483916,2.32739144116388,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0.795229689809303,1.0896272488926,0.160753148465019,0,0,0,0,0.850493793212345,0,0.394028536495991,0.734364233889974,0.105600336519406,0,0,0,0,0,0,0.864221491201268,0,0,0.246277562248017,0.170388021785422,0.226624183040251,0.146552233678082,0,0.904980694530854,1.85125642439766,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0.610131324509816,2.003054891304,1.72022758707021,1.44207766997908,1.36612086471044,0.138348634936231,0.249960815924213,0,0,0.705797459094515,0,0,0,0,0,0.189403005275089,0,0,0,0,0.15543720058278,0.147855149989634,0.159296767163702,0,0.155262956876259,0,0,0.521745061811734,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0.244736704506468,0,0,0.219284049578707,0.353378291891762,0,0,0.256241518587947,0,0.303859956177382,1.6591012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| |||
|short_description=p7@RAPGEF3 | |||
}} |
Latest revision as of 13:08, 18 September 2015
Short description: | p7@RAPGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RAPGEF3_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | 0bp_to_NM_001098531, uc001rpz.3, uc001rqb.3, uc009zkr.2_5end |
EntrezGene: | RAPGEF3 |
HGNC: | 16629 |
UniProt: | Q99777 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data