FFCP PHASE1:Hg19::chr12:48152853..48152879,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10411 | |EntrezGene=10411 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16629 | |HGNC=16629 | ||
|TSSclassifier=strong | |||
|UniProt=E7EQC8 | |UniProt=E7EQC8 | ||
|association_with_transcript=0bp_to_ENST00000171000_5end | |association_with_transcript=0bp_to_ENST00000171000_5end | ||
|cluster_id=chr12:48152853..48152879,- | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_6_at_RAPGEF3_5end | |description=CAGE_peak_6_at_RAPGEF3_5end | ||
|id=chr12:48152853..48152879,- | |id=chr12:48152853..48152879,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.86e-13;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.02e-20!57;UBERON:0005068!4.02e-20!57;UBERON:0006241!4.02e-20!57;UBERON:0007135!4.02e-20!57;UBERON:0002616!2.64e-17!59;UBERON:0007023!2.65e-17!115;UBERON:0000955!8.59e-17!69;UBERON:0006238!8.59e-17!69;UBERON:0001017!2.59e-16!82;UBERON:0005743!2.87e-16!86;UBERON:0000073!6.33e-16!94;UBERON:0001016!6.33e-16!94;UBERON:0003075!3.88e-15!86;UBERON:0007284!3.88e-15!86;UBERON:0002780!6.84e-15!41;UBERON:0001890!6.84e-15!41;UBERON:0006240!6.84e-15!41;UBERON:0002346!2.52e-14!90;UBERON:0003080!2.96e-14!42;UBERON:0002020!8.49e-13!34;UBERON:0003528!8.49e-13!34;UBERON:0001893!1.07e-12!34;UBERON:0000033!5.18e-12!123;UBERON:0002791!5.28e-12!33;UBERON:0000153!1.03e-11!129;UBERON:0007811!1.03e-11!129;UBERON:0001869!4.42e-11!32;UBERON:0003056!5.66e-11!61;UBERON:0000025!8.04e-11!194;UBERON:0004111!3.44e-10!241;UBERON:0002619!8.28e-10!22;UBERON:0001950!1.04e-09!20;UBERON:0004121!1.63e-09!169;UBERON:0000477!1.75e-09!286;UBERON:0000924!3.31e-09!173;UBERON:0006601!3.31e-09!173;UBERON:0000475!4.37e-09!365;UBERON:0000956!1.04e-08!25;UBERON:0000203!1.04e-08!25;UBERON:0004732!2.68e-07!13;UBERON:0000064!3.32e-07!219;UBERON:0003076!3.49e-07!15;UBERON:0003057!3.49e-07!15;UBERON:0000119!4.23e-07!312;UBERON:0000483!5.72e-07!309;UBERON:0000200!9.24e-07!6 | |ontology_enrichment_uberon=UBERON:0001049!4.02e-20!57;UBERON:0005068!4.02e-20!57;UBERON:0006241!4.02e-20!57;UBERON:0007135!4.02e-20!57;UBERON:0002616!2.64e-17!59;UBERON:0007023!2.65e-17!115;UBERON:0000955!8.59e-17!69;UBERON:0006238!8.59e-17!69;UBERON:0001017!2.59e-16!82;UBERON:0005743!2.87e-16!86;UBERON:0000073!6.33e-16!94;UBERON:0001016!6.33e-16!94;UBERON:0003075!3.88e-15!86;UBERON:0007284!3.88e-15!86;UBERON:0002780!6.84e-15!41;UBERON:0001890!6.84e-15!41;UBERON:0006240!6.84e-15!41;UBERON:0002346!2.52e-14!90;UBERON:0003080!2.96e-14!42;UBERON:0002020!8.49e-13!34;UBERON:0003528!8.49e-13!34;UBERON:0001893!1.07e-12!34;UBERON:0000033!5.18e-12!123;UBERON:0002791!5.28e-12!33;UBERON:0000153!1.03e-11!129;UBERON:0007811!1.03e-11!129;UBERON:0001869!4.42e-11!32;UBERON:0003056!5.66e-11!61;UBERON:0000025!8.04e-11!194;UBERON:0004111!3.44e-10!241;UBERON:0002619!8.28e-10!22;UBERON:0001950!1.04e-09!20;UBERON:0004121!1.63e-09!169;UBERON:0000477!1.75e-09!286;UBERON:0000924!3.31e-09!173;UBERON:0006601!3.31e-09!173;UBERON:0000475!4.37e-09!365;UBERON:0000956!1.04e-08!25;UBERON:0000203!1.04e-08!25;UBERON:0004732!2.68e-07!13;UBERON:0000064!3.32e-07!219;UBERON:0003076!3.49e-07!15;UBERON:0003057!3.49e-07!15;UBERON:0000119!4.23e-07!312;UBERON:0000483!5.72e-07!309;UBERON:0000200!9.24e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0003528;6.46e-37;34!UBERON:0002020;6.46e-37;34!UBERON:0000073;1.03e-34;53!UBERON:0002616;1.03e-34;53!UBERON:0001893;1.27e-34;34!UBERON:0002780;5.30e-34;41!UBERON:0001890;5.30e-34;41!UBERON:0002791;3.38e-33;32!UBERON:0002619;2.16e-29;22!UBERON:0001869;7.80e-29;32!UBERON:0001950;1.84e-27;20!UBERON:0000956;1.16e-25;25!UBERON:0000203;1.16e-25;25!UBERON:0000125;3.00e-23;9!UBERON:0002308;3.00e-23;9!UBERON:0000955;1.54e-19;68!UBERON:0002298;6.16e-18;6!UBERON:0001017;2.41e-17;75!UBERON:0002420;4.14e-17;9!UBERON:0007245;4.14e-17;9!UBERON:0010009;4.14e-17;9!UBERON:0010011;4.14e-17;9!UBERON:0000454;4.14e-17;9!UBERON:0001016;2.86e-16;83!UBERON:0009663;1.76e-15;7!UBERON:0000988;5.82e-14;3!UBERON:0000200;5.57e-12;6!UBERON:0004732;1.19e-11;13!UBERON:0002784;1.06e-10;4!UBERON:0005162;1.63e-10;2!UBERON:0000122;1.63e-10;2!UBERON:0001871;1.68e-10;6!UBERON:0001897;2.63e-10;2!UBERON:0010225;2.63e-10;2!UBERON:0001894;2.80e-10;7!UBERON:0002148;3.78e-10;2!UBERON:0006331;3.78e-10;2!UBERON:0009662;3.78e-10;2!UBERON:0000369;5.28e-10;4!UBERON:0002435;5.28e-10;4!UBERON:0000204;5.28e-10;4!UBERON:0002771;6.74e-10;2!UBERON:0007023;3.72e-09;114!UBERON:0004733;7.80e-09;12!UBERON:0002028;7.80e-09;12!UBERON:0000349;1.49e-08;5!UBERON:0001872;2.54e-08;5!UBERON:0001870;9.25e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.31e-58,56;UBERON:0005068,6.31e-58,56;UBERON:0006241,6.31e-58,56;UBERON:0007135,6.31e-58,56;UBERON:0000073,4.40e-57,53;UBERON:0002616,4.40e-57,53;UBERON:0002780,1.49e-49,41;UBERON:0001890,1.49e-49,41;UBERON:0003080,1.49e-49,41;UBERON:0006240,1.49e-49,41;UBERON:0000955,2.92e-49,68;UBERON:0006238,2.92e-49,68;UBERON:0003528,3.24e-45,34;UBERON:0002020,3.24e-45,34;UBERON:0003075,1.06e-43,82;UBERON:0007284,1.06e-43,82;UBERON:0001017,1.74e-43,81;UBERON:0001016,1.69e-41,89;UBERON:0002346,2.33e-41,86;UBERON:0001893,1.69e-40,34;UBERON:0002791,2.07e-38,32;UBERON:0003056,3.56e-38,61;UBERON:0010371,1.53e-35,104;UBERON:0001869,7.14e-34,32;UBERON:0007023,6.24e-32,114;UBERON:0002619,3.81e-29,22;UBERON:0010314,1.63e-28,132;UBERON:0001950,3.67e-27,20;UBERON:0000956,1.90e-25,25;UBERON:0000203,1.90e-25,25;UBERON:0000125,2.53e-23,9;UBERON:0002308,2.53e-23,9;UBERON:0004121,1.82e-21,171;UBERON:0000924,1.82e-21,171;UBERON:0006601,1.82e-21,171;UBERON:0000025,1.74e-18,192;UBERON:0002298,2.04e-18,6;UBERON:0002420,5.17e-17,9;UBERON:0007245,5.17e-17,9;UBERON:0010009,5.17e-17,9;UBERON:0010011,5.17e-17,9;UBERON:0000454,5.17e-17,9;UBERON:0009663,1.98e-15,7;UBERON:0000988,3.16e-14,3;UBERON:0011216,1.57e-13,223;UBERON:0004111,2.81e-13,240;UBERON:0004732,6.52e-12,13;UBERON:0000200,9.33e-12,6;UBERON:0000483,1.99e-11,306;UBERON:0000119,3.08e-11,309;UBERON:0002784,1.07e-10,4;UBERON:0005162,1.53e-10,2;UBERON:0000122,1.53e-10,2;UBERON:0001871,1.95e-10,6;UBERON:0001897,2.53e-10,2;UBERON:0002148,2.53e-10,2;UBERON:0006331,2.53e-10,2;UBERON:0009662,2.53e-10,2;UBERON:0010225,2.53e-10,2;UBERON:0001894,2.68e-10,7;UBERON:0006222,2.68e-10,7;UBERON:0003076,4.39e-10,15;UBERON:0003057,4.39e-10,15;UBERON:0000369,5.83e-10,4;UBERON:0002435,5.83e-10,4;UBERON:0000204,5.83e-10,4;UBERON:0010082,5.83e-10,4;UBERON:0002771,8.82e-10,2;UBERON:0004733,4.61e-09,12;UBERON:0002028,4.61e-09,12;UBERON:0007277,4.61e-09,12;UBERON:0000349,1.98e-08,5;UBERON:0001872,2.82e-08,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0,0,0.123766352960047,0.331397375727916,0,0,0,0.487932798790507,0.369363174230364,0.204000691244253,0,0,0,0.125542639594803,0,0,0.0787107813136792,0,0,0,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0.144846518960824,0,0,0.189069634328136,0,0.175669571386252,0.851363990735132,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0.275118041940067,0.208994966536811,0.775250277507987,0,0,0,0.760272105718513,0.488124115096339,0,0.81014194788176,0.267899184852239,0,0.225222960966644,0,0,0.549605231791222,0,0,0,0,0,0.264818361626438,0.573673241497627,0,0,0,0.49333509683432,0,0,0.163461903113459,0,0,0,0,0,0.448346041655403,0,0,0,0.204154171254893,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0.438977620880838,0,0,0,0.358779271377724,0,0.211931901159562,0.300091096084402,0.206105058476878,0.772921620136887,0,0.337552664482532,0.0974370051611986,0.252433774244115,0,0.161646056818812,0.355009592516614,0,0,0.57978255948989,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0.721879481669586,0,0,0,0.220587945464788,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0.590789906681404,0,0,0.171567810298526,0.109750285408626,0,0,0.185176890317059,0,0,1.44331342025273,0,0.117408694235822,0.288732895522148,0,0,0,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0,0,0.176096868026452,0.414656231081544,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.129271715757778,0,0,0.797814349754612,0,0,0,0.799266537048298,0,0.542621605391443,0,0,0,0,0,0.871533458600294,0.199945982364114,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0.356857977594324,0,0.117141414992713,0.300946099727719,0,0,0,0.184369168541703,0.0868836144680828,0.391602314925481,0,0,0.215714200818617,0,0,0,0.604780586659361,0,0,0,0,0,0.160853921143607,0,0.616838775210622,0.177561725313127,0,0,0,0,0,0,0,0,0.131124414959424,0,0.231046011313244,1.56869953835371,0,0.211103257785751,0,0.170093705276516,0.215915916102139,1.54227252690289,0,0.501689773854853,0,0.831076008928724,0.447749509444357,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0.290033387828457,0,0,0.165284915360978,0,0.382838137483752,0,0,0,0,0.616067160352178,0,0,0,0,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0,0,0.404364963146632,0,0,0,0,1.05650146756755,0.136499911407986,0,0,0,0,0,0.578775534266688,0.655894752046633,0,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.213648142254946,0,0.490080431962063,0,0,0,0,0,0,0.423347165447766,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0.146508179271894,0,0,0,0,0,0,0,2.11004124615769,0,0,0,0,0,0.251932747854276,0.20453736500431,0.123084805461069,0,0.0898683511473268,0.179021174675609,0,0.295930216910801,0,0,0.969332746095218,1.11321717794222,1.99613798001194,0,2.36141999989728,0,0,0,0.709163045303809,0,0,0,0,1.32656082487949,0,0.221158519862449,0.295547618953547,0.219385397153973,0.10893846351899,0.139423744278603,0.846452843541768,0,0,0.0897576444097721,0,0.31900115973192,0.274792780205587,0,0,0.31396051279005,0,0,0,0,0,0,0.632994193584081,0.816164040795739,0.141353071433941,0,0,0.176915129006678,0,0,0,0,3.63966118095656,0,1.40558667435203,0,0,0,0.789168805698781,0,0.91821828489147,0.126373159256976,0.150323419414493,0,1.32930774541437,0,0.313932918407225,1.19472429772959,0.569219092059585,0,0,0.293977192243133,0.0870592065804026,0.34945333648406,0,0,0.0730893170861856,0,0,0,0,0.137041924646751,0,1.01297273529406,0,0.160317640503067,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46429682005587,0,0,0,0.279282401272254,0,0,0,0.429226048136571,0,0.134366944973453,0,0,0,0.0824158583811665,0,0,0.0846733320657845,0,2.58786471611994,0.482259445395058,0.137539436597234,0,0,0,1.27574068981852,0,0.472834243795189,1.36381929150995,0.105600336519406,0.179287339332845,0,0,0,0,0,0,0,0,0.328370082997356,0,0.113312091520126,0.293104467356165,0,2.71494208359256,2.51241943311111,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0.886068179966986,1.22026264901963,2.253436752717,0.573409195690071,1.55300672151593,1.61450647647597,0,0.124980407962107,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829412415681711,0,0,0.150257608997218,0.380805212168795,0,0,0,0,0.398095888698616,0,0.343395705182793,0,1.26184898228651,0,0.214441591374926,0,0,0,0,0,0,0,0.176689145945881,0,0,1.02496607435179,0,0,3.45646090379327,0,0,0,0,0,0,0,0.213383459388282,0.344429959321631,0,0,0.139879507719444,0,0.127894371303652,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0.3062454773532,1.02766760154335,0,2.07524016774297,0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| ||
|short_description=p6@RAPGEF3 | |short_description=p6@RAPGEF3 | ||
}} | }} |
Latest revision as of 13:07, 18 September 2015
Short description: | p6@RAPGEF3 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RAPGEF3_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | 0bp_to_ENST00000171000_5end |
EntrezGene: | RAPGEF3 |
HGNC: | 16629 |
UniProt: | E7EQC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data