FFCP PHASE1:Hg19::chr15:63674199..63674213,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=771 | |EntrezGene=771 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1371 | |HGNC=1371 | ||
|TSSclassifier=strong | |||
|UniProt=O43570 | |UniProt=O43570 | ||
|association_with_transcript=-124bp_to_NM_001218,NM_206925,uc002amc.2,uc002amd.2,uc002ame.2_5end | |association_with_transcript=-124bp_to_NM_001218,NM_206925,uc002amc.2,uc002amd.2,uc002ame.2_5end | ||
|cluster_id=chr15:63674199..63674213,- | |||
|description=CAGE_peak_3_at_CA12_5end | |description=CAGE_peak_3_at_CA12_5end | ||
|id=chr15:63674199..63674213,- | |id=chr15:63674199..63674213,- | ||
|ontology_enrichment_celltype=CL:0000055!1.45e-12!180;CL:0000057!1.98e-09!75;CL:0002620!4.24e-09!23 | |ontology_enrichment_celltype=CL:0000055!1.45e-12!180;CL:0000057!1.98e-09!75;CL:0002620!4.24e-09!23 | ||
|ontology_enrichment_celltype_v019=CL:0000047;2.26e-19;2!CL:0000062;1.05e-09;9!CL:0002540;4.73e-07;6 | |ontology_enrichment_celltype_v019=CL:0000047;2.26e-19;2!CL:0000062;1.05e-09;9!CL:0002540;4.73e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000062,6.17e-08,11;CL:0000375,6.17e-08,11;CL:0000335,6.17e-08,11;CL:0002540,4.00e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0000358;8.93e-11;1!UBERON:0006222;2.38e-10;1!CL:0000335;4.96e-08;11 | |ontology_enrichment_development_v019=UBERON:0000358;8.93e-11;1!UBERON:0006222;2.38e-10;1!CL:0000335;4.96e-08;11 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.05e-10!365 | |ontology_enrichment_uberon=UBERON:0000475!2.05e-10!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0000369;1.58e-21;4!UBERON:0002435;1.58e-21;4!UBERON:0000204;1.58e-21;4!UBERON:0005383;1.33e-13;3!UBERON:0005382;1.33e-13;3!UBERON:0009663;1.48e-12;7!UBERON:0001874;8.93e-11;1!UBERON:0001882;2.38e-10;1!UBERON:0005403;2.38e-10;1!UBERON:0002420;6.98e-10;9!UBERON:0000125;6.98e-10;9!UBERON:0007245;6.98e-10;9!UBERON:0002308;6.98e-10;9!UBERON:0010009;6.98e-10;9!UBERON:0010011;6.98e-10;9!UBERON:0000454;6.98e-10;9 | |ontology_enrichment_uberon_v019=UBERON:0000369;1.58e-21;4!UBERON:0002435;1.58e-21;4!UBERON:0000204;1.58e-21;4!UBERON:0005383;1.33e-13;3!UBERON:0005382;1.33e-13;3!UBERON:0009663;1.48e-12;7!UBERON:0001874;8.93e-11;1!UBERON:0001882;2.38e-10;1!UBERON:0005403;2.38e-10;1!UBERON:0002420;6.98e-10;9!UBERON:0000125;6.98e-10;9!UBERON:0007245;6.98e-10;9!UBERON:0002308;6.98e-10;9!UBERON:0010009;6.98e-10;9!UBERON:0010011;6.98e-10;9!UBERON:0000454;6.98e-10;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,1.24e-21,4;UBERON:0002435,1.24e-21,4;UBERON:0000204,1.24e-21,4;UBERON:0010082,1.24e-21,4;UBERON:0005383,1.17e-13,3;UBERON:0005382,1.17e-13,3;UBERON:0009663,1.29e-12,7;UBERON:0001874,7.40e-11,1;UBERON:0001882,2.08e-10,1;UBERON:0005403,2.08e-10,1;UBERON:0002420,6.29e-10,9;UBERON:0000125,6.29e-10,9;UBERON:0007245,6.29e-10,9;UBERON:0002308,6.29e-10,9;UBERON:0010009,6.29e-10,9;UBERON:0010011,6.29e-10,9;UBERON:0000454,6.29e-10,9 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,1.89515962028049,0,0,0,0,0.263766978228454,0.123766352960047,0.331397375727916,0,0,0,0,0.369363174230364,0,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0.795285947051099,0.973269740605272,0.378139268656271,0.221729397462564,0.175669571386252,0.392937226493138,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.993943903390637,0.25326102332916,0.132409180813219,0.573673241497627,0.709336764396714,0,0,0,0,0.269421344139376,0.163461903113459,0.302714855289863,0.576175924479999,0,1.24864030732128,0,0.298897361103602,0.117434498643765,0.323745888736263,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0.600182192168805,0.206105058476878,0,0.37223371266318,0.675105328965065,0.292311015483596,0.252433774244115,0,0.323292113637624,0.710019185033229,0.10075209822764,0.67824236924195,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0.100528972411631,0.0925884451585296,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.22001485746285,0,0,0,0.26593811658487,0,0.257207374262142,0,0.266422179016099,0,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0.821905290201534,0,0,0,0,0,2.03275699377971,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,1.50473049863859,0,1.03473071292505,2.65690239414175,0.737476674166813,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0,0,0.256278298511402,0,0,0,0.154209693802656,0.532685175939381,0.821271560138091,0,0.581051892299796,0,0.200506470303285,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984043937099117,0,0,0,0,0,0,0,0.48335359146061,0.154048617114644,0,0,0.214840489736547,0.435050081742686,0.0852266274161009,0.178064071293475,0.165284915360978,0.384380134730212,0.382838137483752,0.10115778085555,0,0.62962469366128,0,0.308033580176089,1.59691809095107,0,0.18532421910392,0.286249773483982,0,0,0,0,0.42793898803392,1.90921948755562,0,0,0,0,0.404364963146632,1.58510321173008,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0.405820753925408,0.6196469961995,1.12678241012897,0.143411352204052,0,0.35667105148125,0.709522128141196,0.633322905892992,0,0.75894634753143,0,0.192444225451024,0,0,0,0,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,1.25314822272926,0,0,0,0,0,0.0927680981618513,0,0,0.349839999984783,0,0,0,0,0,0,0,4.42870692906919,0.723578631752448,0,0.331737779793674,0.295547618953547,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0.067401132980677,0,1.87411556580271,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0,0.687944129886466,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.0969890164884194,0,0,0,0.19871461170299,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0.305994652908965,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0.121499113316049,0.335434687599266,0.945668487590378,0.786818822024972,0,0.179287339332845,0,0,0,0,0.542999601753713,1.72844298240254,0.653174720218818,0,0,0.340776043570843,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0.74627401443437,0,0,0.757612021100357,1.76097531226803,2.66943366478961,0.457680136793847,0.604923695052956,0.310874401165561,0,0,0.449803112163605,0,0.414706207840855,0.53168342911599,0.521745061811734,0.901545653983311,0.380805212168795,0,0.363697318405119,0,0.464033759878494,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920529751259204,0.139879507719444,0,0,0.107824811396682,0,0,0,0,0,0,0.636008701306837,0,0,0.352675943690684,0,1.66995985250795,0,0.319267718114302,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0.135939465953663,0,0,0.111231401892069,0.078493092850514,2.98519620840404,0,0,0.647782773655864,0.9555033757741,0.0714765441766563,1.10609528212909,0,0,0,0.414432328326074,0.3414369541879,0,0,0.118332000730565,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0.413731983447581,0,0,0,0,0,0,0,0.217716747896961,0,0.336760265072938,0.215166616178029,0,0,0,0,0,2.34640942403454,0.244482888365733,0,0,0,0 | |phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,1.89515962028049,0,0,0,0,0.263766978228454,0.123766352960047,0.331397375727916,0,0,0,0,0.369363174230364,0,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0.795285947051099,0.973269740605272,0.378139268656271,0.221729397462564,0.175669571386252,0.392937226493138,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.993943903390637,0.25326102332916,0.132409180813219,0.573673241497627,0.709336764396714,0,0,0,0,0.269421344139376,0.163461903113459,0.302714855289863,0.576175924479999,0,1.24864030732128,0,0.298897361103602,0.117434498643765,0.323745888736263,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0.600182192168805,0.206105058476878,0,0.37223371266318,0.675105328965065,0.292311015483596,0.252433774244115,0,0.323292113637624,0.710019185033229,0.10075209822764,0.67824236924195,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0.100528972411631,0.0925884451585296,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.22001485746285,0,0,0,0.26593811658487,0,0.257207374262142,0,0.266422179016099,0,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0.821905290201534,0,0,0,0,0,2.03275699377971,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,1.50473049863859,0,1.03473071292505,2.65690239414175,0.737476674166813,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0,0,0.256278298511402,0,0,0,0.154209693802656,0.532685175939381,0.821271560138091,0,0.581051892299796,0,0.200506470303285,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984043937099117,0,0,0,0,0,0,0,0.48335359146061,0.154048617114644,0,0,0.214840489736547,0.435050081742686,0.0852266274161009,0.178064071293475,0.165284915360978,0.384380134730212,0.382838137483752,0.10115778085555,0,0.62962469366128,0,0.308033580176089,1.59691809095107,0,0.18532421910392,0.286249773483982,0,0,0,0,0.42793898803392,1.90921948755562,0,0,0,0,0.404364963146632,1.58510321173008,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0.405820753925408,0.6196469961995,1.12678241012897,0.143411352204052,0,0.35667105148125,0.709522128141196,0.633322905892992,0,0.75894634753143,0,0.192444225451024,0,0,0,0,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,1.25314822272926,0,0,0,0,0,0.0927680981618513,0,0,0.349839999984783,0,0,0,0,0,0,0,4.42870692906919,0.723578631752448,0,0.331737779793674,0.295547618953547,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0.067401132980677,0,1.87411556580271,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0,0.687944129886466,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.0969890164884194,0,0,0,0.19871461170299,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0.305994652908965,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0.121499113316049,0.335434687599266,0.945668487590378,0.786818822024972,0,0.179287339332845,0,0,0,0,0.542999601753713,1.72844298240254,0.653174720218818,0,0,0.340776043570843,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0.74627401443437,0,0,0.757612021100357,1.76097531226803,2.66943366478961,0.457680136793847,0.604923695052956,0.310874401165561,0,0,0.449803112163605,0,0.414706207840855,0.53168342911599,0.521745061811734,0.901545653983311,0.380805212168795,0,0.363697318405119,0,0.464033759878494,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920529751259204,0.139879507719444,0,0,0.107824811396682,0,0,0,0,0,0,0.636008701306837,0,0,0.352675943690684,0,1.66995985250795,0,0.319267718114302,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0.135939465953663,0,0,0.111231401892069,0.078493092850514,2.98519620840404,0,0,0.647782773655864,0.9555033757741,0.0714765441766563,1.10609528212909,0,0,0,0.414432328326074,0.3414369541879,0,0,0.118332000730565,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0.413731983447581,0,0,0,0,0,0,0,0.217716747896961,0,0.336760265072938,0.215166616178029,0,0,0,0,0,2.34640942403454,0.244482888365733,0,0,0,0 | ||
|short_description=p3@CA12 | |short_description=p3@CA12 | ||
}} | }} |
Latest revision as of 12:24, 18 September 2015
Short description: | p3@CA12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CA12_5end |
Coexpression cluster: | NA |
Association with transcript: | -124bp_to_NM_001218, NM_206925, uc002amc.2, uc002amd.2, uc002ame.2_5end |
EntrezGene: | CA12 |
HGNC: | 1371 |
UniProt: | O43570 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
osteoblast | 6.17e-08 | 11 |
osteoprogenitor cell | 6.17e-08 | 11 |
mesenchyme condensation cell | 6.17e-08 | 11 |
mesenchymal stem cell of the bone marrow | 4.00e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 1.24e-21 | 4 |
striatum | 1.24e-21 | 4 |
ventral part of telencephalon | 1.24e-21 | 4 |
future corpus striatum | 1.24e-21 | 4 |
caudate-putamen | 1.17e-13 | 3 |
dorsal striatum | 1.17e-13 | 3 |
telencephalic nucleus | 1.29e-12 | 7 |
putamen | 7.40e-11 | 1 |
nucleus accumbens | 2.08e-10 | 1 |
ventral striatum | 2.08e-10 | 1 |
basal ganglion | 6.29e-10 | 9 |
neural nucleus | 6.29e-10 | 9 |
nuclear complex of neuraxis | 6.29e-10 | 9 |
nucleus of brain | 6.29e-10 | 9 |
aggregate regional part of brain | 6.29e-10 | 9 |
collection of basal ganglia | 6.29e-10 | 9 |
cerebral subcortex | 6.29e-10 | 9 |