FFCP PHASE1:Hg19::chr3:47088671..47088676,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29072 | |EntrezGene=29072 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18420 | |HGNC=18420 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-154bp_to_ENST00000479832_5end | |association_with_transcript=-154bp_to_ENST00000479832_5end | ||
|cluster_id=chr3:47088671..47088676,- | |||
|coexpression_cluster_id=C255 | |||
|description=CAGE_peak_28_at_SETD2_5end | |description=CAGE_peak_28_at_SETD2_5end | ||
|id=chr3:47088671..47088676,- | |id=chr3:47088671..47088676,- | ||
|ontology_enrichment_celltype=CL:0000945!3.53e-10!24;CL:0000826!3.53e-10!24;CL:0002550!1.27e-08!1;CL:0002127!1.37e-08!1;CL:0000914!1.37e-08!1;CL:0000911!1.37e-08!1;CL:0000814!1.37e-08!1;CL:0002042!1.37e-08!1;CL:0002039!1.37e-08!1;CL:0002040!1.37e-08!1;CL:0002041!1.37e-08!1;CL:0000946!3.06e-08!1;CL:0000786!3.06e-08!1;CL:0000980!3.06e-08!1;CL:0000542!1.69e-07!53;CL:0000051!1.69e-07!53 | |ontology_enrichment_celltype=CL:0000945!3.53e-10!24;CL:0000826!3.53e-10!24;CL:0002550!1.27e-08!1;CL:0002127!1.37e-08!1;CL:0000914!1.37e-08!1;CL:0000911!1.37e-08!1;CL:0000814!1.37e-08!1;CL:0002042!1.37e-08!1;CL:0002039!1.37e-08!1;CL:0002040!1.37e-08!1;CL:0002041!1.37e-08!1;CL:0000946!3.06e-08!1;CL:0000786!3.06e-08!1;CL:0000980!3.06e-08!1;CL:0000542!1.69e-07!53;CL:0000051!1.69e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0000138;6.78e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,6.34e-08,6;CL:0000138,6.34e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0003918;5.90e-17;10!UBERON:0007687;5.90e-17;10 | |||
|ontology_enrichment_disease=DOID:3371!6.50e-09!1;DOID:4549!6.50e-09!1;DOID:5861!6.50e-09!1;DOID:6496!6.50e-09!1;DOID:4960!7.01e-09!1;DOID:0070004!7.01e-09!1;DOID:2355!8.78e-09!1;DOID:12603!1.71e-08!1;DOID:0060058!5.72e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:4960;2.21e-40;1!DOID:3371;2.21e-40;1!DOID:4549;2.21e-40;1!DOID:5861;2.21e-40;1!DOID:0070004;2.21e-40;1!DOID:6496;2.21e-40;1!DOID:154;5.69e-21;2!DOID:4236;5.69e-21;2!DOID:1115;6.42e-09;20!DOID:201;6.78e-08;6!DOID:0060100;6.78e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.48e-40,1;DOID:4549,1.48e-40,1;DOID:5861,1.48e-40,1;DOID:6496,1.48e-40,1;DOID:4960,2.21e-40,1;DOID:0070004,2.21e-40,1;DOID:154,6.96e-21,2;DOID:4236,6.96e-21,2;DOID:1115,6.42e-09,20;DOID:201,6.34e-08,6;DOID:0060100,6.34e-08,6 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002418;1.83e-14;3!UBERON:0004755;1.83e-14;3!UBERON:0001474;8.47e-10;18!UBERON:0002113;1.15e-07;24!UBERON:0011143;1.15e-07;24!UBERON:0004765;4.41e-07;26 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,1.60e-14,3;UBERON:0004755,1.60e-14,3;UBERON:0002113,3.78e-07,26;UBERON:0003918,3.78e-07,26;UBERON:0011143,3.78e-07,26;UBERON:0005095,3.78e-07,26;UBERON:0007687,3.78e-07,26 | |||
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|short_description=p28@SETD2 | |short_description=p28@SETD2 | ||
}} | }} |
Latest revision as of 12:14, 18 September 2015
Short description: | p28@SETD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_SETD2_5end |
Coexpression cluster: | C255_Wilms_leiomyoblastoma_kidney_adrenal_MCF7_epithelioid_Mast |
Association with transcript: | -154bp_to_ENST00000479832_5end |
EntrezGene: | SETD2 |
HGNC: | 18420 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 6.34e-08 | 6 |
chondrocyte | 6.34e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 1.60e-14 | 3 |
skeletal tissue | 1.60e-14 | 3 |
kidney | 3.78e-07 | 26 |
kidney mesenchyme | 3.78e-07 | 26 |
upper urinary tract | 3.78e-07 | 26 |
kidney rudiment | 3.78e-07 | 26 |
kidney field | 3.78e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.48e-40 | 1 |
extraosseous chondrosarcoma | 1.48e-40 | 1 |
myxoid chondrosarcoma | 1.48e-40 | 1 |
extraskeletal myxoid chondrosarcoma | 1.48e-40 | 1 |
bone marrow cancer | 2.21e-40 | 1 |
myeloma | 2.21e-40 | 1 |
mixed cell type cancer | 6.96e-21 | 2 |
carcinosarcoma | 6.96e-21 | 2 |
sarcoma | 6.42e-09 | 20 |
connective tissue cancer | 6.34e-08 | 6 |
musculoskeletal system cancer | 6.34e-08 | 6 |