FFCP PHASE1:Hg19::chr12:47226152..47226179,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55089 | |EntrezGene=55089 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14679 | |HGNC=14679 | ||
|TSSclassifier=strong | |||
|UniProt=F8VRD9 | |UniProt=F8VRD9 | ||
|association_with_transcript=11bp_to_ENST00000546940_5end | |association_with_transcript=11bp_to_ENST00000546940_5end | ||
|cluster_id=chr12:47226152..47226179,- | |||
|description=CAGE_peak_6_at_SLC38A4_5end | |description=CAGE_peak_6_at_SLC38A4_5end | ||
|id=chr12:47226152..47226179,- | |id=chr12:47226152..47226179,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.35e-14;12 | |ontology_enrichment_celltype_v019=CL:0000182;2.35e-14;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.40e-14,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.56e-07;11 | |ontology_enrichment_development_v019=UBERON:0004161;1.56e-07;11 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!2.67e-07!26 | |ontology_enrichment_uberon=UBERON:0005057!2.67e-07!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;5.48e-24;19!UBERON:0006925;5.48e-24;19!UBERON:0002426;3.91e-19;1!UBERON:0003831;3.91e-19;1!UBERON:0003898;3.91e-19;1!UBERON:0004830;3.91e-19;1!UBERON:0003830;3.91e-19;1!UBERON:0005175;3.91e-19;1!UBERON:0001774;3.91e-19;1!UBERON:0001103;3.91e-19;1!UBERON:0002423;2.80e-18;25!UBERON:0002365;9.68e-15;31!UBERON:0002330;9.68e-15;31!UBERON:0002368;8.84e-13;33!UBERON:0005090;2.99e-10;2!UBERON:0001630;2.99e-10;2!UBERON:0000949;2.42e-09;43!UBERON:0001007;3.25e-09;81!UBERON:0005172;3.43e-09;52!UBERON:0005173;3.43e-09;52!UBERON:0002417;1.72e-07;58!UBERON:0000916;1.72e-07;58!UBERON:0001723;2.55e-07;3!UBERON:0001033;2.55e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0002107;5.48e-24;19!UBERON:0006925;5.48e-24;19!UBERON:0002426;3.91e-19;1!UBERON:0003831;3.91e-19;1!UBERON:0003898;3.91e-19;1!UBERON:0004830;3.91e-19;1!UBERON:0003830;3.91e-19;1!UBERON:0005175;3.91e-19;1!UBERON:0001774;3.91e-19;1!UBERON:0001103;3.91e-19;1!UBERON:0002423;2.80e-18;25!UBERON:0002365;9.68e-15;31!UBERON:0002330;9.68e-15;31!UBERON:0002368;8.84e-13;33!UBERON:0005090;2.99e-10;2!UBERON:0001630;2.99e-10;2!UBERON:0000949;2.42e-09;43!UBERON:0001007;3.25e-09;81!UBERON:0005172;3.43e-09;52!UBERON:0005173;3.43e-09;52!UBERON:0002417;1.72e-07;58!UBERON:0000916;1.72e-07;58!UBERON:0001723;2.55e-07;3!UBERON:0001033;2.55e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.35e-24,19;UBERON:0006925,5.35e-24,19;UBERON:0008836,5.35e-24,19;UBERON:0008835,9.36e-21,22;UBERON:0003894,9.36e-21,22;UBERON:0009854,7.33e-20,23;UBERON:0002426,3.91e-19,1;UBERON:0003831,3.91e-19,1;UBERON:0003898,3.91e-19,1;UBERON:0004830,3.91e-19,1;UBERON:0003830,3.91e-19,1;UBERON:0005175,3.91e-19,1;UBERON:0001774,3.91e-19,1;UBERON:0001103,3.91e-19,1;UBERON:0010084,3.91e-19,1;UBERON:0007499,2.75e-18,25;UBERON:0009497,2.75e-18,25;UBERON:0000015,2.75e-18,25;UBERON:0002423,2.75e-18,25;UBERON:0006235,2.75e-18,25;UBERON:0004161,2.75e-18,25;UBERON:0009856,1.37e-17,26;UBERON:0002365,8.91e-15,31;UBERON:0002330,8.91e-15,31;UBERON:0002368,4.22e-13,35;UBERON:0005172,5.84e-12,54;UBERON:0005173,5.84e-12,54;UBERON:0002417,9.48e-11,60;UBERON:0000916,9.48e-11,60;UBERON:0005090,2.99e-10,2;UBERON:0001630,2.99e-10,2;UBERON:0000949,3.30e-10,45;UBERON:0003929,1.64e-08,54;UBERON:0005177,1.90e-08,101;UBERON:0002530,8.60e-08,59;UBERON:0009569,1.41e-07,112;UBERON:0001041,2.28e-07,87;UBERON:0001723,2.63e-07,3;UBERON:0001033,2.63e-07,3;UBERON:0010056,2.63e-07,3;UBERON:0004921,4.00e-07,118 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.33775174109154,14.7424082501644,5.31710916013264,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,0,0,0,0,2.40773294189637,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88754497648161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,2.034148301238,0,0,0,0,0,0,0.113312091520126,5.56898487976713,3.97520666736664,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3443177292531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,2.73947616152849,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615976841137482,0,0.485710993059139,0,0,0.951360726220549,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714193294391221,0,0.186224142887574,0,0,0,0,3.76456631193809,0.0673520530145875,0,0.665320713092027,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.33775174109154,14.7424082501644,5.31710916013264,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,0,0,0,0,2.40773294189637,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88754497648161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,2.034148301238,0,0,0,0,0,0,0.113312091520126,5.56898487976713,3.97520666736664,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3443177292531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,2.73947616152849,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615976841137482,0,0.485710993059139,0,0,0.951360726220549,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714193294391221,0,0.186224142887574,0,0,0,0,3.76456631193809,0.0673520530145875,0,0.665320713092027,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p6@SLC38A4 | |short_description=p6@SLC38A4 | ||
}} | }} |
Latest revision as of 11:58, 18 September 2015
Short description: | p6@SLC38A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SLC38A4_5end |
Coexpression cluster: | NA |
Association with transcript: | 11bp_to_ENST00000546940_5end |
EntrezGene: | SLC38A4 |
HGNC: | 14679 |
UniProt: | F8VRD9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.40e-14 | 12 |