FFCP PHASE1:Hg19::chr1:47779845..47779848,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6491,6886 | |EntrezGene=6491,6886 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10879,11556 | |HGNC=10879,11556 | ||
|TSSclassifier=strong | |||
|UniProt=Q15468,Q5T0C7 | |UniProt=Q15468,Q5T0C7 | ||
|association_with_transcript=-26bp_to_ENST00000337817,ENST00000360380,ENST00000447475,NM_001048166,NM_003035,uc001crb.1,uc001crc.1,uc001crd.1,uc001cre.1,uc001crg.1_5end | |association_with_transcript=-26bp_to_ENST00000337817,ENST00000360380,ENST00000447475,NM_001048166,NM_003035,uc001crb.1,uc001crc.1,uc001crd.1,uc001cre.1,uc001crg.1_5end | ||
|cluster_id=chr1:47779845..47779848,- | |||
|description=CAGE_peak_3_at_STIL_5end,CAGE_peak_8_at_TAL1_5end | |description=CAGE_peak_3_at_STIL_5end,CAGE_peak_8_at_TAL1_5end | ||
|id=chr1:47779845..47779848,- | |id=chr1:47779845..47779848,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000039;5.09e-08;7!CL:0000586;5.09e-08;7!CL:0000764;1.64e-07;2!CL:0000054;1.64e-07;2!CL:0002262;1.64e-07;2!CL:1000398;1.64e-07;2!CL:0000558;1.64e-07;2!CL:0000137;1.64e-07;2!CL:0000092;1.64e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.10e-08,7;CL:0000586,5.10e-08,7;CL:0000764,1.36e-07,2;CL:0000765,1.36e-07,2;CL:0000050,1.36e-07,2;CL:0000038,1.36e-07,2;CL:0000558,1.36e-07,2;CL:0000547,1.36e-07,2;CL:0000549,1.36e-07,2;CL:0000550,1.36e-07,2;CL:0000552,1.36e-07,2;CL:0002262,1.45e-07,2;CL:1000398,1.45e-07,2;CL:0000054,1.87e-07,2;CL:0000137,1.87e-07,2;CL:0000092,1.87e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.54e-25!235;DOID:14566!1.54e-24!239;DOID:0050686!4.81e-14!137;DOID:0050687!3.06e-13!143;DOID:305!5.56e-13!106;DOID:2531!9.76e-11!51;DOID:0060083!9.76e-11!51;DOID:1240!2.80e-09!39;DOID:8692!8.55e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:0060085;9.72e-14;1!DOID:3165;9.72e-14;1!DOID:0060121;9.72e-14;1!DOID:2438;9.72e-14;1!DOID:4418;9.72e-14;1!DOID:200;1.64e-07;2!DOID:4305;1.64e-07;2!DOID:1036;4.02e-07;8 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,1.25e-13,1;DOID:3165,1.25e-13,1;DOID:0060121,1.25e-13,1;DOID:2438,1.25e-13,1;DOID:4418,1.25e-13,1;DOID:200,1.87e-07,2;DOID:4305,1.87e-07,2;DOID:1036,3.78e-07,8 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001281;1.64e-07;2!UBERON:0003497;1.64e-07;2!UBERON:0003909;1.64e-07;2!UBERON:0003835;1.64e-07;2!UBERON:0000473;4.02e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,1.45e-07,2;UBERON:0003497,1.45e-07,2;UBERON:0003909,1.45e-07,2;UBERON:0003835,1.45e-07,2;UBERON:0000473,4.02e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,2.53299878168311,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0.273748850145768,0.502170558379211,0.152826811495903,0.492603536699674,0.314843125254717,0,0,0,0,0,0,0.387336002901508,0.426507697462265,0,0,0,0,0,0,0.257575567634187,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0.384273959177026,0.260118695119756,0,0.552700035571697,0,0.14828656316206,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0.383587685530591,0,0,0,0.795285947051099,0,0.283604451492204,0,0.175669571386252,0.0654895377488563,0,0,0.324547393654683,0.174129737299267,0,0,0,0.371457501329565,0,0,0,0.56530794192401,0,0.550236083880135,0,0,0,0,0,0,0,0,0,0.357198913136319,0.22452937262617,0,0,0,0,0,0,0,0,0.379891534993739,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0.326923806226917,0,0,0.234321431833797,0,0,0.149448680551801,0.469737994575059,0.323745888736263,0.280901613404497,0,0.122834317311768,0,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0,0.358779271377724,0,0.423863802319124,0.900273288253207,0.103052529238439,0,0,0.675105328965065,0.0974370051611986,0.504867548488229,0,0.323292113637624,0,0.10075209822764,0,0,0.545492241181669,0,0.243947412259191,0.397589304964456,0.464775771478074,0.310983165046111,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0.723033089650446,0.220587945464788,0,0.949082476444386,0.134831308160164,0,0.38474715694639,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0.491953754172454,0,0,0,0.301586917234893,0.0925884451585296,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0.246217006087397,0,0,0,0.16798212819886,0,0.53735113621709,0.290633938513962,0,1.97065295158377,0,0,0.144119953416961,0,0.063497894292169,0,0,0,0.308482478109971,0,0,0,0,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0.336255431980582,0,0,0.128343036279748,0,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0.315404830067869,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0.106727557803444,0,0,0,0.248107807818777,0.460385919864187,0,0,0,0.160853921143607,0,0,0.177561725313127,0,0,0,0.483437798366489,0.40101294060657,0.184161977871793,0.114814448164607,0.182091168006717,0,0,0.15403067420883,0,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,1.53481913652154,0.784306353074702,0,0,0,0,0.183138929636687,0.165018999841176,0,0.650060246036521,0,0.096670718292122,0.770243085573222,0.307007349452259,0.275673144969061,0.107420244868274,0,0.255679882248303,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54907405947211,0.235624804691373,0,0,0,0,0,0,0.409499734223957,0,0,0,0,0,0,0,0,0,0.281695602532241,0.286822704408103,0,0,0,0,0,0,0.349934720244983,0.288666338176536,0,1.08890984861323,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0.490080431962063,0.557409525377156,0.432807638929335,0.497992903438899,0.159426272728822,0.399158742865633,0.383010740264733,0,0.649243880549111,0,0,0.313359791546046,0,0,0,0,0.425846237690326,0.343505344755765,0.614481528616916,0.223676107892416,0.166849141711909,0.390776190804081,0.556812347790485,1.23087398947712,2.43410110628385,0,0,0.18714054040822,0,0.242721043499027,0.445773537109913,0,0,0,0,0,0,0,0.329607748453519,0.844501632511974,0,0.276283915531148,0.251932747854276,0.102268682502155,0.861593638227486,0,0.269605053441981,0.358042349351218,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0.236387681767936,0.344743373241465,0.291604613383254,0.173624994933292,0,0,0,0,0,0,0.544692317594951,0.41827123283581,0,0,0.23056390438806,0.179515288819544,0,0,0,0,0,0.156980256395025,0.831058409500782,1.80476528493745,0.980312671588698,1.1747511088309,0.37950746544837,0.317873157960757,0.632994193584081,0.163232808159148,0,0.216388639742091,0,0,0,0.296521128680622,0,0.208843899010911,0,0,0.234264445725339,0.547364367646998,0.19566461893209,0,0.789168805698781,0,0,0,1.20258735531594,0.207376382794494,0,0.330991955875499,0.313932918407225,0,0.284609546029793,0,0.173559738335131,0.489961987071888,0.435296032902013,0,0,0.290268993867255,0.292357268344742,0.164230914106418,0,0,0,0.137041924646751,1.19228767021794,0.0633107959558787,0.195551382734803,0.0801588202515337,0,0,0,0.458146384663663,0.171594997861965,0.14405479798815,0.124252535565433,0.707082103850386,0.407712618220842,0.104602846312333,0.713987523454252,0,0,0.136905378891993,0,0,0.262887354279314,0.279282401272254,0,0,0.199679000498991,0,0.223171457441873,0,0,3.49487848582361,0.630265458457789,0.412079291905832,0.674035438541849,0.196854963029498,0.0846733320657845,0,0,0,0.137539436597234,0.415440338029185,0,0,0,0,0.0788057072991982,0.104909176269996,0.105600336519406,0,0.767660789277781,0,0,0.25426853765475,0,0,0,0,0.656740165994712,0,0.113312091520126,0,0,0,0.13223260174269,0.342173675768659,0,0,0.1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| 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| ||
|short_description=p3@STIL,p8@TAL1 | |short_description=p3@STIL,p8@TAL1 | ||
}} | }} |
Latest revision as of 10:03, 18 September 2015
Short description: | p3@STIL, p8@TAL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_STIL_5end, CAGE_peak_8_at_TAL1_5end |
Coexpression cluster: | NA |
Association with transcript: | -26bp_to_ENST00000337817, ENST00000360380, ENST00000447475, NM_001048166, NM_003035, uc001crb.1, uc001crc.1, uc001crd.1, uc001cre.1, uc001crg.1_5end |
EntrezGene: | 6491,6886 |
HGNC: | 11556&submit=Submit 10879, 11556 |
UniProt: | Q15468Q5T0C7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.10e-08 | 7 |
germ cell | 5.10e-08 | 7 |
erythroid lineage cell | 1.36e-07 | 2 |
erythroblast | 1.36e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 1.36e-07 | 2 |
erythroid progenitor cell | 1.36e-07 | 2 |
reticulocyte | 1.36e-07 | 2 |
proerythroblast | 1.36e-07 | 2 |
basophilic erythroblast | 1.36e-07 | 2 |
polychromatophilic erythroblast | 1.36e-07 | 2 |
orthochromatic erythroblast | 1.36e-07 | 2 |
endothelial cell of sinusoid | 1.45e-07 | 2 |
endothelial cell of hepatic sinusoid | 1.45e-07 | 2 |
bone matrix secreting cell | 1.87e-07 | 2 |
osteocyte | 1.87e-07 | 2 |
osteoclast | 1.87e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 1.45e-07 | 2 |
abdomen blood vessel | 1.45e-07 | 2 |
sinusoid | 1.45e-07 | 2 |
abdominal segment blood vessel | 1.45e-07 | 2 |
testis | 4.02e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 1.25e-13 | 1 |
skin benign neoplasm | 1.25e-13 | 1 |
integumentary system benign neoplasm | 1.25e-13 | 1 |
dermis tumor | 1.25e-13 | 1 |
cutaneous fibrous histiocytoma | 1.25e-13 | 1 |
giant cell tumor | 1.87e-07 | 2 |
bone giant cell tumor | 1.87e-07 | 2 |
chronic leukemia | 3.78e-07 | 8 |