FFCP PHASE1:Hg19::chr3:45928029..45928050,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:45928029..45928050,+
|short_description=p1@CCR9
|description=CAGE_peak_1_at_CCR9_5end
|association_with_transcript=0bp_to_ENST00000355983,ENST00000422395_5...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10803 | |EntrezGene=10803 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1610 | |HGNC=1610 | ||
|TSSclassifier=strong | |||
|UniProt=C9JWC0 | |UniProt=C9JWC0 | ||
|association_with_transcript=0bp_to_ENST00000355983,ENST00000422395_5end | |||
|cluster_id=chr3:45928029..45928050,+ | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_1_at_CCR9_5end | |||
|id=chr3:45928029..45928050,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.19e-37!18;CL:0000789!1.19e-37!18;CL:0002420!1.19e-37!18;CL:0002419!1.19e-37!18;CL:0000790!1.19e-37!18;CL:0000838!7.38e-33!52;CL:0000084!4.40e-32!25;CL:0000827!4.40e-32!25;CL:0000542!4.47e-32!53;CL:0000051!4.47e-32!53;CL:0000625!7.83e-26!11;CL:0002087!4.77e-18!119;CL:0000738!4.00e-17!140;CL:0000624!6.21e-16!6;CL:0002031!1.21e-13!124;CL:0000037!4.94e-12!172;CL:0000566!4.94e-12!172;CL:0000988!7.91e-11!182;CL:0002032!1.39e-09!165;CL:0000837!1.39e-09!165;CL:0000898!8.30e-09!3;CL:0000623!7.20e-08!3;CL:0000825!7.20e-08!3;CL:0000236!8.05e-08!14;CL:0000842!1.27e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.14e-42;18!CL:0000789;3.14e-42;18!CL:0002419;3.14e-42;18!CL:0000084;1.26e-29;25!CL:0000624;7.73e-29;6!CL:0000625;3.00e-20;11!CL:0000542;3.45e-16;53!CL:0000898;2.32e-15;3!CL:0000815;1.29e-10;2!CL:0000792;1.29e-10;2!CL:0002677;1.29e-10;2!CL:0000236;6.12e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.70e-42,18;CL:0000789,2.70e-42,18;CL:0002420,2.70e-42,18;CL:0002419,2.70e-42,18;CL:0000790,2.70e-42,18;CL:0000084,1.13e-29,25;CL:0000827,1.13e-29,25;CL:0000624,6.08e-29,6;CL:0000838,1.49e-25,52;CL:0000542,5.41e-25,53;CL:0000051,5.41e-25,53;CL:0000625,3.05e-20,11;CL:0000898,2.38e-15,3;CL:0000815,1.32e-10,2;CL:0000792,1.32e-10,2;CL:0002677,1.32e-10,2;CL:0002087,1.76e-10,115;CL:0000738,2.15e-09,136;CL:0002031,1.05e-08,120;CL:0000236,3.21e-08,14;CL:0000037,8.13e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;3.14e-42;18!CL:0000051;3.45e-16;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.07e-09!7;UBERON:0000178!6.39e-09!15;UBERON:0000179!6.39e-09!15;UBERON:0000463!6.39e-09!15;UBERON:0002370!4.88e-07!4;UBERON:0005058!4.88e-07!4;UBERON:0009113!4.88e-07!4;UBERON:0003295!4.88e-07!4;UBERON:0005562!4.88e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.48e-11;2!UBERON:0005058;1.48e-11;2!UBERON:0009113;1.48e-11;2!UBERON:0004177;8.61e-10;5!UBERON:0005057;8.61e-10;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.43e-12,4;UBERON:0005058,2.43e-12,4;UBERON:0009113,2.43e-12,4;UBERON:0003295,2.43e-12,4;UBERON:0005562,2.43e-12,4;UBERON:0004177,7.52e-12,7;UBERON:0005057,7.52e-12,7;UBERON:0000974,1.86e-08,10;UBERON:0003351,2.31e-08,6 | |||
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| ||
|short_description=p1@CCR9 | |||
}} | }} |
Latest revision as of 09:31, 18 September 2015
Short description: | p1@CCR9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCR9_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000355983, ENST00000422395_5end |
EntrezGene: | CCR9 |
HGNC: | 1610 |
UniProt: | C9JWC0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.70e-42 | 18 |
alpha-beta T cell | 2.70e-42 | 18 |
immature T cell | 2.70e-42 | 18 |
mature T cell | 2.70e-42 | 18 |
immature alpha-beta T cell | 2.70e-42 | 18 |
T cell | 1.13e-29 | 25 |
pro-T cell | 1.13e-29 | 25 |
CD4-positive, alpha-beta T cell | 6.08e-29 | 6 |
lymphoid lineage restricted progenitor cell | 1.49e-25 | 52 |
lymphocyte | 5.41e-25 | 53 |
common lymphoid progenitor | 5.41e-25 | 53 |
CD8-positive, alpha-beta T cell | 3.05e-20 | 11 |
naive T cell | 2.38e-15 | 3 |
regulatory T cell | 1.32e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.32e-10 | 2 |
naive regulatory T cell | 1.32e-10 | 2 |
nongranular leukocyte | 1.76e-10 | 115 |
leukocyte | 2.15e-09 | 136 |
hematopoietic lineage restricted progenitor cell | 1.05e-08 | 120 |
B cell | 3.21e-08 | 14 |
hematopoietic stem cell | 8.13e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.43e-12 | 4 |
hemolymphoid system gland | 2.43e-12 | 4 |
thymic region | 2.43e-12 | 4 |
pharyngeal gland | 2.43e-12 | 4 |
thymus primordium | 2.43e-12 | 4 |
hemopoietic organ | 7.52e-12 | 7 |
immune organ | 7.52e-12 | 7 |
neck | 1.86e-08 | 10 |
pharyngeal epithelium | 2.31e-08 | 6 |