FFCP PHASE1:Hg19::chr3:45838106..45838115,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54716 | |EntrezGene=54716 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30927 | |HGNC=30927 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP91 | |UniProt=Q9NP91 | ||
|association_with_transcript=-71bp_to_NM_020208,NM_022405,uc011bai.1,uc011baj.1_5end | |association_with_transcript=-71bp_to_NM_020208,NM_022405,uc011bai.1,uc011baj.1_5end | ||
|cluster_id=chr3:45838106..45838115,- | |||
|description=CAGE_peak_4_at_SLC6A20_5end | |description=CAGE_peak_4_at_SLC6A20_5end | ||
|id=chr3:45838106..45838115,- | |id=chr3:45838106..45838115,- | ||
|ontology_enrichment_celltype=CL:1000507!1.87e-12!12;CL:1000494!1.87e-12!12;CL:1000449!5.83e-09!16;CL:0002681!7.88e-09!13;CL:0002584!7.88e-09!13;CL:0000239!2.31e-08!3;CL:1000615!2.31e-08!3;CL:0002306!2.31e-08!3;CL:1000497!8.43e-08!18;CL:0002518!8.43e-08!18 | |ontology_enrichment_celltype=CL:1000507!1.87e-12!12;CL:1000494!1.87e-12!12;CL:1000449!5.83e-09!16;CL:0002681!7.88e-09!13;CL:0002584!7.88e-09!13;CL:0000239!2.31e-08!3;CL:1000615!2.31e-08!3;CL:0002306!2.31e-08!3;CL:1000497!8.43e-08!18;CL:0002518!8.43e-08!18 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.20e-25;3!UBERON:0006242;2.47e-19;1!UBERON:0005425;2.47e-19;1!UBERON:0006241;2.55e-07;3!UBERON:0003057;2.55e-07;3 | |ontology_enrichment_development_v019=UBERON:0003056;6.20e-25;3!UBERON:0006242;2.47e-19;1!UBERON:0005425;2.47e-19;1!UBERON:0006241;2.55e-07;3!UBERON:0003057;2.55e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3111;2.47e-19;1!DOID:3603;2.47e-19;1!DOID:4929;2.37e-10;2 | |ontology_enrichment_disease_v019=DOID:3111;2.47e-19;1!DOID:3603;2.47e-19;1!DOID:4929;2.37e-10;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3111,1.88e-19,1;DOID:3603,1.88e-19,1;DOID:4929,1.89e-10,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000941;2.47e-19;1!UBERON:0001785;2.47e-19;1!UBERON:0002464;2.47e-19;1!UBERON:0004904;2.47e-19;1!UBERON:0001021;2.47e-19;1!UBERON:0002360;2.37e-10;2!UBERON:0003714;2.37e-10;2!UBERON:0005162;2.37e-10;2!UBERON:0000122;2.37e-10;2!UBERON:0000094;2.37e-10;2!UBERON:0010743;2.37e-10;2!UBERON:0002114;1.81e-07;2!UBERON:0002240;2.55e-07;3!UBERON:0002110;2.55e-07;3!UBERON:0005174;2.55e-07;3!UBERON:0001137;2.55e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0000941;2.47e-19;1!UBERON:0001785;2.47e-19;1!UBERON:0002464;2.47e-19;1!UBERON:0004904;2.47e-19;1!UBERON:0001021;2.47e-19;1!UBERON:0002360;2.37e-10;2!UBERON:0003714;2.37e-10;2!UBERON:0005162;2.37e-10;2!UBERON:0000122;2.37e-10;2!UBERON:0000094;2.37e-10;2!UBERON:0010743;2.37e-10;2!UBERON:0002114;1.81e-07;2!UBERON:0002240;2.55e-07;3!UBERON:0002110;2.55e-07;3!UBERON:0005174;2.55e-07;3!UBERON:0001137;2.55e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.25e-19,1;UBERON:0001785,2.25e-19,1;UBERON:0002464,2.25e-19,1;UBERON:0004904,2.25e-19,1;UBERON:0001021,2.25e-19,1;UBERON:0003902,2.25e-19,1;UBERON:0005425,2.25e-19,1;UBERON:0000966,6.90e-13,6;UBERON:0005388,6.90e-13,6;UBERON:0001802,6.90e-13,6;UBERON:0003714,2.27e-10,2;UBERON:0005162,2.27e-10,2;UBERON:0000122,2.27e-10,2;UBERON:0002360,2.99e-10,2;UBERON:0000094,2.99e-10,2;UBERON:0010743,2.99e-10,2;UBERON:0002114,1.82e-07,2;UBERON:0002240,2.63e-07,3;UBERON:0005174,2.63e-07,3;UBERON:0001137,2.63e-07,3;UBERON:0002110,3.16e-07,3;UBERON:0006242,3.16e-07,3 | |||
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| ||
|short_description=p4@SLC6A20 | |short_description=p4@SLC6A20 | ||
}} | }} |
Latest revision as of 09:23, 18 September 2015
Short description: | p4@SLC6A20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SLC6A20_5end |
Coexpression cluster: | NA |
Association with transcript: | -71bp_to_NM_020208, NM_022405, uc011bai.1, uc011baj.1_5end |
EntrezGene: | SLC6A20 |
HGNC: | 30927 |
UniProt: | Q9NP91 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.25e-19 | 1 |
cranial nerve | 2.25e-19 | 1 |
nerve trunk | 2.25e-19 | 1 |
nerve connecting eye with brain | 2.25e-19 | 1 |
nerve | 2.25e-19 | 1 |
retinal neural layer | 2.25e-19 | 1 |
presumptive neural retina | 2.25e-19 | 1 |
retina | 6.90e-13 | 6 |
photoreceptor array | 6.90e-13 | 6 |
posterior segment of eyeball | 6.90e-13 | 6 |
neural tissue | 2.27e-10 | 2 |
multi cell component structure | 2.27e-10 | 2 |
neuron projection bundle | 2.27e-10 | 2 |
meninx | 2.99e-10 | 2 |
membrane organ | 2.99e-10 | 2 |
meningeal cluster | 2.99e-10 | 2 |
duodenum | 1.82e-07 | 2 |
spinal cord | 2.63e-07 | 3 |
dorsal region element | 2.63e-07 | 3 |
dorsum | 2.63e-07 | 3 |
gallbladder | 3.16e-07 | 3 |
gall bladder primordium | 3.16e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 1.88e-19 | 1 |
mucinous cystadenocarcinoma | 1.88e-19 | 1 |
tubular adenocarcinoma | 1.89e-10 | 2 |