FFCP PHASE1:Hg19::chr21:38071760..38071776,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr21:38071760..38071776,+
|short_description=p5@SIM2
|description=CAGE_peak_5_at_SIM2_5end
|association_with_transcript=-214bp_to_ENST00000430056,NM_005069,NM_...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6493 | |EntrezGene=6493 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10883 | |HGNC=10883 | ||
|TSSclassifier=strong | |||
|UniProt=Q14190 | |UniProt=Q14190 | ||
|association_with_transcript=-214bp_to_ENST00000430056,NM_005069,NM_009586,uc002yvp.2,uc002yvq.2,uc002yvr.2_5end | |||
|cluster_id=chr21:38071760..38071776,+ | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_5_at_SIM2_5end | |||
|id=chr21:38071760..38071776,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000138;1.44e-17;6!CL:0000327;1.44e-15;15!CL:0000153;4.67e-12;9!CL:0000447;4.67e-12;9!CL:0000632;1.53e-09;3!CL:0000499;1.17e-08;28!CL:0000306;1.44e-07;4!CL:0002222;1.44e-07;4!CL:0002224;1.44e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,1.33e-17,6;CL:0000138,1.33e-17,6;CL:0000327,1.44e-15,15;CL:0000153,4.42e-12,9;CL:0000447,4.42e-12,9;CL:0000632,1.67e-09,3;CL:0000499,1.17e-08,28;CL:0000306,1.49e-07,4;CL:0002222,1.49e-07,4;CL:0002224,1.49e-07,4;CL:0000151,7.22e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.25e-19!143;DOID:14566!3.81e-17!239;DOID:162!3.89e-17!235;DOID:305!2.18e-14!106;DOID:299!7.54e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:3371;2.16e-26;1!DOID:4549;2.16e-26;1!DOID:5861;2.16e-26;1!DOID:6496;2.16e-26;1!DOID:3347;7.62e-26;1!DOID:3571;7.62e-26;1!DOID:201;1.44e-17;6!DOID:0060100;1.44e-17;6!DOID:3350;1.21e-13;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.16e-26,1;DOID:4549,2.16e-26,1;DOID:5861,2.16e-26,1;DOID:6496,2.16e-26,1;DOID:3347,7.62e-26,1;DOID:3571,9.79e-26,1;DOID:201,1.44e-17,6;DOID:0060100,1.44e-17,6;DOID:3350,1.37e-13,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;1.01e-09;3!UBERON:0004755;1.01e-09;3!UBERON:0010077;1.44e-07;4!UBERON:0005389;1.44e-07;4!UBERON:0000484;1.44e-07;4!UBERON:0000965;1.44e-07;4!UBERON:0001803;1.44e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,1.01e-09,3;UBERON:0004755,1.01e-09,3;UBERON:0010077,1.49e-07,4;UBERON:0005389,1.49e-07,4;UBERON:0000484,1.49e-07,4;UBERON:0002546,1.49e-07,4;UBERON:0000965,1.49e-07,4;UBERON:0001803,1.49e-07,4;UBERON:0003073,1.49e-07,4;UBERON:0005426,1.49e-07,4 | |||
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| ||
|short_description=p5@SIM2 | |||
}} | }} |
Latest revision as of 08:01, 18 September 2015
Short description: | p5@SIM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SIM2_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -214bp_to_ENST00000430056, NM_005069, NM_009586, uc002yvp.2, uc002yvq.2, uc002yvr.2_5end |
EntrezGene: | SIM2 |
HGNC: | 10883 |
UniProt: | Q14190 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 1.33e-17 | 6 |
chondrocyte | 1.33e-17 | 6 |
extracellular matrix secreting cell | 1.44e-15 | 15 |
GAG secreting cell | 4.42e-12 | 9 |
carbohydrate secreting cell | 4.42e-12 | 9 |
hepatic stellate cell | 1.67e-09 | 3 |
stromal cell | 1.17e-08 | 28 |
crystallin accumulating cell | 1.49e-07 | 4 |
vertebrate lens cell | 1.49e-07 | 4 |
lens epithelial cell | 1.49e-07 | 4 |
secretory cell | 7.22e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 1.01e-09 | 3 |
skeletal tissue | 1.01e-09 | 3 |
cuboidal epithelium | 1.49e-07 | 4 |
transparent eye structure | 1.49e-07 | 4 |
simple cuboidal epithelium | 1.49e-07 | 4 |
cranial placode | 1.49e-07 | 4 |
lens of camera-type eye | 1.49e-07 | 4 |
epithelium of lens | 1.49e-07 | 4 |
lens placode | 1.49e-07 | 4 |
lens vesicle | 1.49e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.16e-26 | 1 |
extraosseous chondrosarcoma | 2.16e-26 | 1 |
myxoid chondrosarcoma | 2.16e-26 | 1 |
extraskeletal myxoid chondrosarcoma | 2.16e-26 | 1 |
osteosarcoma | 7.62e-26 | 1 |
liver cancer | 9.79e-26 | 1 |
connective tissue cancer | 1.44e-17 | 6 |
musculoskeletal system cancer | 1.44e-17 | 6 |
mesenchymal cell neoplasm | 1.37e-13 | 2 |