FFCP PHASE1:Hg19::chr6:33399093..33399111,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8831 | |EntrezGene=8831 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11497 | |HGNC=11497 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-396bp_to_ENST00000428982_5end | |association_with_transcript=-396bp_to_ENST00000428982_5end | ||
|cluster_id=chr6:33399093..33399111,+ | |||
|coexpression_cluster_id=C203 | |coexpression_cluster_id=C203 | ||
|description=CAGE_peak_5_at_SYNGAP1_5end | |description=CAGE_peak_5_at_SYNGAP1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!4.01e-08!5 | |ontology_enrichment_celltype=CL:0002322!4.01e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0002322;3.23e-10;5!CL:0000540;3.74e-09;6!CL:0000404;3.74e-09;6 | |ontology_enrichment_celltype_v019=CL:0002322;3.23e-10;5!CL:0000540;3.74e-09;6!CL:0000404;3.74e-09;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.81e-10,5;CL:0000540,3.51e-09,6;CL:0000031,3.51e-09,6;CL:0000404,3.51e-09,6;CL:0000047,5.51e-07,8;CL:0001024,5.89e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000031;3.74e-09;6 | |ontology_enrichment_development_v019=CL:0000031;3.74e-09;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:8692;4.06e-10;31!DOID:1240;2.05e-07;39 | |ontology_enrichment_disease_v019=DOID:8692;4.06e-10;31!DOID:1240;2.05e-07;39 | ||
|ontology_enrichment_disease_v019_2=DOID:8692,3.82e-10,31;DOID:1240,8.12e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.48e-32!94;UBERON:0001016!4.48e-32!94;UBERON:0005743!4.45e-30!86;UBERON:0001017!2.74e-29!82;UBERON:0001049!1.32e-27!57;UBERON:0005068!1.32e-27!57;UBERON:0006241!1.32e-27!57;UBERON:0007135!1.32e-27!57;UBERON:0002780!8.53e-27!41;UBERON:0001890!8.53e-27!41;UBERON:0006240!8.53e-27!41;UBERON:0003080!6.49e-26!42;UBERON:0002616!1.93e-24!59;UBERON:0000955!3.15e-24!69;UBERON:0006238!3.15e-24!69;UBERON:0002346!1.24e-23!90;UBERON:0003075!1.21e-21!86;UBERON:0007284!1.21e-21!86;UBERON:0001869!1.75e-21!32;UBERON:0002619!1.76e-21!22;UBERON:0001893!1.94e-21!34;UBERON:0002791!2.32e-20!33;UBERON:0002020!7.94e-20!34;UBERON:0003528!7.94e-20!34;UBERON:0007023!4.10e-19!115;UBERON:0001950!9.72e-19!20;UBERON:0003056!2.06e-18!61;UBERON:0000956!3.23e-18!25;UBERON:0000203!3.23e-18!25;UBERON:0000924!1.45e-16!173;UBERON:0006601!1.45e-16!173;UBERON:0004121!4.70e-15!169;UBERON:0000153!2.29e-13!129;UBERON:0007811!2.29e-13!129;UBERON:0000033!1.92e-12!123;UBERON:0000349!4.01e-08!5;UBERON:0000200!6.98e-08!6;UBERON:0001872!3.38e-07!5;UBERON:0001894!7.67e-07!7;UBERON:0006222!7.67e-07!7 | |ontology_enrichment_uberon=UBERON:0000073!4.48e-32!94;UBERON:0001016!4.48e-32!94;UBERON:0005743!4.45e-30!86;UBERON:0001017!2.74e-29!82;UBERON:0001049!1.32e-27!57;UBERON:0005068!1.32e-27!57;UBERON:0006241!1.32e-27!57;UBERON:0007135!1.32e-27!57;UBERON:0002780!8.53e-27!41;UBERON:0001890!8.53e-27!41;UBERON:0006240!8.53e-27!41;UBERON:0003080!6.49e-26!42;UBERON:0002616!1.93e-24!59;UBERON:0000955!3.15e-24!69;UBERON:0006238!3.15e-24!69;UBERON:0002346!1.24e-23!90;UBERON:0003075!1.21e-21!86;UBERON:0007284!1.21e-21!86;UBERON:0001869!1.75e-21!32;UBERON:0002619!1.76e-21!22;UBERON:0001893!1.94e-21!34;UBERON:0002791!2.32e-20!33;UBERON:0002020!7.94e-20!34;UBERON:0003528!7.94e-20!34;UBERON:0007023!4.10e-19!115;UBERON:0001950!9.72e-19!20;UBERON:0003056!2.06e-18!61;UBERON:0000956!3.23e-18!25;UBERON:0000203!3.23e-18!25;UBERON:0000924!1.45e-16!173;UBERON:0006601!1.45e-16!173;UBERON:0004121!4.70e-15!169;UBERON:0000153!2.29e-13!129;UBERON:0007811!2.29e-13!129;UBERON:0000033!1.92e-12!123;UBERON:0000349!4.01e-08!5;UBERON:0000200!6.98e-08!6;UBERON:0001872!3.38e-07!5;UBERON:0001894!7.67e-07!7;UBERON:0006222!7.67e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0001954;3.07e-12;2!UBERON:0003022;3.07e-12;2!UBERON:0002421;3.07e-12;2!UBERON:0002600;3.07e-12;2!UBERON:0002619;6.18e-11;22!UBERON:0002021;9.89e-11;5!UBERON:0000956;1.44e-09;25!UBERON:0000203;1.44e-09;25!UBERON:0002780;1.63e-08;41!UBERON:0001890;1.63e-08;41!UBERON:0002114;4.38e-08;2!UBERON:0001869;2.40e-07;32!UBERON:0002791;6.15e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0001954;3.07e-12;2!UBERON:0003022;3.07e-12;2!UBERON:0002421;3.07e-12;2!UBERON:0002600;3.07e-12;2!UBERON:0002619;6.18e-11;22!UBERON:0002021;9.89e-11;5!UBERON:0000956;1.44e-09;25!UBERON:0000203;1.44e-09;25!UBERON:0002780;1.63e-08;41!UBERON:0001890;1.63e-08;41!UBERON:0002114;4.38e-08;2!UBERON:0001869;2.40e-07;32!UBERON:0002791;6.15e-07;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001954,3.17e-12,2;UBERON:0003022,3.17e-12,2;UBERON:0002421,3.17e-12,2;UBERON:0002600,3.17e-12,2;UBERON:0002619,5.79e-11,22;UBERON:0002021,9.61e-11,5;UBERON:0000956,1.36e-09,25;UBERON:0000203,1.36e-09,25;UBERON:0002780,4.09e-09,41;UBERON:0001890,4.09e-09,41;UBERON:0003080,4.09e-09,41;UBERON:0006240,4.09e-09,41;UBERON:0001016,7.18e-09,89;UBERON:0001017,1.21e-08,81;UBERON:0002114,4.39e-08,2;UBERON:0002791,2.30e-07,32;UBERON:0001869,2.30e-07,32;UBERON:0003056,4.65e-07,61;UBERON:0003528,6.82e-07,34;UBERON:0002020,6.82e-07,34;UBERON:0001893,6.82e-07,34;UBERON:0000073,9.24e-07,53;UBERON:0002616,9.24e-07,53 | |||
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| ||
|short_description=p5@SYNGAP1 | |short_description=p5@SYNGAP1 | ||
}} | }} |
Latest revision as of 07:36, 18 September 2015
Short description: | p5@SYNGAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SYNGAP1_5end |
Coexpression cluster: | C203_acute_NK_chronic_CD133_lymphoma_immature_Dendritic |
Association with transcript: | -396bp_to_ENST00000428982_5end |
EntrezGene: | SYNGAP1 |
HGNC: | 11497 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.81e-10 | 5 |
neuron | 3.51e-09 | 6 |
neuroblast | 3.51e-09 | 6 |
electrically signaling cell | 3.51e-09 | 6 |
neuronal stem cell | 5.51e-07 | 8 |
CD34-positive, CD38-negative hematopoietic stem cell | 5.89e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
Ammon's horn | 3.17e-12 | 2 |
lobe parts of cerebral cortex | 3.17e-12 | 2 |
hippocampal formation | 3.17e-12 | 2 |
limbic lobe | 3.17e-12 | 2 |
regional part of cerebral cortex | 5.79e-11 | 22 |
occipital lobe | 9.61e-11 | 5 |
cerebral cortex | 1.36e-09 | 25 |
pallium | 1.36e-09 | 25 |
regional part of forebrain | 4.09e-09 | 41 |
forebrain | 4.09e-09 | 41 |
anterior neural tube | 4.09e-09 | 41 |
future forebrain | 4.09e-09 | 41 |
nervous system | 7.18e-09 | 89 |
central nervous system | 1.21e-08 | 81 |
duodenum | 4.39e-08 | 2 |
regional part of telencephalon | 2.30e-07 | 32 |
cerebral hemisphere | 2.30e-07 | 32 |
pre-chordal neural plate | 4.65e-07 | 61 |
brain grey matter | 6.82e-07 | 34 |
gray matter | 6.82e-07 | 34 |
telencephalon | 6.82e-07 | 34 |
regional part of nervous system | 9.24e-07 | 53 |
regional part of brain | 9.24e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 3.82e-10 | 31 |
leukemia | 8.12e-08 | 39 |