FFCP PHASE1:Hg19::chr19:42391671..42391705,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9138 | |EntrezGene=9138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=681 | |HGNC=681 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-448bp_to_AB590439,DQ893592,DQ895004,EU832644,EU832721_5end | |||
|cluster_id=chr19:42391671..42391705,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_11_at_ARHGEF1_5end | |||
|id=chr19:42391671..42391705,+ | |||
|ontology_enrichment_celltype=CL:0000542!5.21e-47!53;CL:0000051!5.21e-47!53;CL:0000838!5.60e-46!52;CL:0002087!8.77e-38!119;CL:0000738!9.07e-37!140;CL:0000037!5.55e-32!172;CL:0000566!5.55e-32!172;CL:0002031!1.12e-29!124;CL:0000988!6.44e-29!182;CL:0000791!7.46e-27!18;CL:0000789!7.46e-27!18;CL:0002420!7.46e-27!18;CL:0002419!7.46e-27!18;CL:0000790!7.46e-27!18;CL:0000084!1.68e-26!25;CL:0000827!1.68e-26!25;CL:0002032!5.30e-26!165;CL:0000837!5.30e-26!165;CL:0000625!4.11e-17!11;CL:0000945!2.35e-16!24;CL:0000826!2.35e-16!24;CL:0000236!1.25e-12!14;CL:0000624!2.78e-10!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.70e-44;18!CL:0000789;6.70e-44;18!CL:0002419;6.70e-44;18!CL:0000084;5.44e-41;25!CL:0000625;2.14e-27;11!CL:0000542;6.34e-24;53!CL:0000624;3.40e-16;6!CL:0000623;2.19e-09;3!CL:0000226;5.23e-09;3!CL:0000842;5.23e-09;3!CL:0000898;8.38e-09;3!CL:0002087;1.18e-08;104!CL:0000236;3.20e-08;13!CL:0000767;8.29e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,4.79e-45,52;CL:0000542,5.18e-44,53;CL:0000051,5.18e-44,53;CL:0000791,9.44e-44,18;CL:0000789,9.44e-44,18;CL:0002420,9.44e-44,18;CL:0002419,9.44e-44,18;CL:0000790,9.44e-44,18;CL:0000084,9.91e-41,25;CL:0000827,9.91e-41,25;CL:0000625,1.85e-27,11;CL:0002087,6.76e-26,115;CL:0000738,1.24e-25,136;CL:0002031,6.90e-20,120;CL:0000037,1.33e-19,168;CL:0000988,5.30e-18,177;CL:0002032,3.49e-16,161;CL:0000837,3.49e-16,161;CL:0000624,4.53e-16,6;CL:0000236,8.71e-10,14;CL:0000623,2.23e-09,3;CL:0000825,2.23e-09,3;CL:0000226,4.97e-09,3;CL:0000842,4.97e-09,3;CL:0000898,1.01e-08,3;CL:0000767,7.00e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;6.70e-44;18!CL:0000051;6.34e-24;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.75e-11!15;UBERON:0000179!3.75e-11!15;UBERON:0000463!3.75e-11!15;UBERON:0002390!3.59e-09!102;UBERON:0003061!3.59e-09!102;UBERON:0002193!7.09e-09!112;UBERON:0004177!7.82e-08!7;UBERON:0002370!4.79e-07!4;UBERON:0005058!4.79e-07!4;UBERON:0009113!4.79e-07!4;UBERON:0003295!4.79e-07!4;UBERON:0005562!4.79e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.52e-18;15!UBERON:0000179;1.52e-18;15!UBERON:0000463;1.52e-18;15!UBERON:0002390;2.18e-13;32!UBERON:0002193;1.19e-09;42!UBERON:0004177;2.48e-08;5!UBERON:0005057;2.48e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.54e-18,15;UBERON:0000179,1.54e-18,15;UBERON:0000463,1.54e-18,15;UBERON:0004177,2.67e-12,7;UBERON:0005057,2.67e-12,7;UBERON:0002370,1.07e-10,4;UBERON:0005058,1.07e-10,4;UBERON:0009113,1.07e-10,4;UBERON:0003295,1.07e-10,4;UBERON:0005562,1.07e-10,4;UBERON:0003351,4.10e-07,6;UBERON:0002193,7.90e-07,108 | |||
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| ||
|short_description=p11@ARHGEF1 | |||
}} | }} |
Latest revision as of 07:06, 18 September 2015
Short description: | p11@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_ARHGEF1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -448bp_to_AB590439, DQ893592, DQ895004, EU832644, EU832721_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 4.79e-45 | 52 |
lymphocyte | 5.18e-44 | 53 |
common lymphoid progenitor | 5.18e-44 | 53 |
mature alpha-beta T cell | 9.44e-44 | 18 |
alpha-beta T cell | 9.44e-44 | 18 |
immature T cell | 9.44e-44 | 18 |
mature T cell | 9.44e-44 | 18 |
immature alpha-beta T cell | 9.44e-44 | 18 |
T cell | 9.91e-41 | 25 |
pro-T cell | 9.91e-41 | 25 |
CD8-positive, alpha-beta T cell | 1.85e-27 | 11 |
nongranular leukocyte | 6.76e-26 | 115 |
leukocyte | 1.24e-25 | 136 |
hematopoietic lineage restricted progenitor cell | 6.90e-20 | 120 |
hematopoietic stem cell | 1.33e-19 | 168 |
hematopoietic cell | 5.30e-18 | 177 |
hematopoietic oligopotent progenitor cell | 3.49e-16 | 161 |
hematopoietic multipotent progenitor cell | 3.49e-16 | 161 |
CD4-positive, alpha-beta T cell | 4.53e-16 | 6 |
B cell | 8.71e-10 | 14 |
natural killer cell | 2.23e-09 | 3 |
pro-NK cell | 2.23e-09 | 3 |
single nucleate cell | 4.97e-09 | 3 |
mononuclear cell | 4.97e-09 | 3 |
naive T cell | 1.01e-08 | 3 |
basophil | 7.00e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.54e-18 | 15 |
haemolymphatic fluid | 1.54e-18 | 15 |
organism substance | 1.54e-18 | 15 |
hemopoietic organ | 2.67e-12 | 7 |
immune organ | 2.67e-12 | 7 |
thymus | 1.07e-10 | 4 |
hemolymphoid system gland | 1.07e-10 | 4 |
thymic region | 1.07e-10 | 4 |
pharyngeal gland | 1.07e-10 | 4 |
thymus primordium | 1.07e-10 | 4 |
pharyngeal epithelium | 4.10e-07 | 6 |
hemolymphoid system | 7.90e-07 | 108 |