FFCP PHASE1:Hg19::chr19:42212501..42212521,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1048 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1817 | |||
|TSSclassifier=strong | |||
|UniProt=P06731 | |||
|association_with_transcript=0bp_to_ENST00000221992_5end | |||
|cluster_id=chr19:42212501..42212521,+ | |||
|coexpression_cluster_id=C249 | |||
|description=CAGE_peak_2_at_CEACAM5_5end | |||
|id=chr19:42212501..42212521,+ | |||
|ontology_enrichment_celltype=CL:0002076!4.53e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002178;1.41e-10;3!CL:0002231;5.06e-10;3!CL:0002553;9.79e-09;1!CL:0000167;1.13e-08;1!CL:0000164;1.13e-08;1!CL:0000502;1.13e-08;1!CL:0000172;1.13e-08;1!CL:0000173;1.13e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.48e-10,3;CL:0002231,5.68e-10,3;CL:0002553,9.79e-09,1;CL:0000167,1.13e-08,1;CL:0000164,1.13e-08,1;CL:0000502,1.13e-08,1;CL:0000172,1.13e-08,1;CL:0000173,1.13e-08,1;CL:0002351,1.13e-08,1 | |||
|ontology_enrichment_development_v019=CL:0002351;1.13e-08;1!UBERON:0009143;1.63e-08;1!UBERON:0001045;2.02e-08;1!UBERON:0006595;7.74e-07;86 | |||
|ontology_enrichment_disease=DOID:3119!1.99e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:4430;1.13e-08;1!DOID:3119;2.68e-08;14!DOID:0050619;2.69e-08;1!DOID:1357;2.69e-08;1!DOID:3111;5.62e-08;1!DOID:3603;5.62e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,1.13e-08,1;DOID:0050619,2.50e-08,1;DOID:1357,2.50e-08,1;DOID:3119,2.62e-08,14;DOID:3111,6.68e-08,1;DOID:3603,6.68e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.51e-18!169;UBERON:0000925!1.51e-18!169;UBERON:0006595!1.51e-18!169;UBERON:0004921!4.34e-16!129;UBERON:0004185!4.34e-16!129;UBERON:0001007!9.36e-15!155;UBERON:0001555!9.36e-15!155;UBERON:0007026!9.36e-15!155;UBERON:0000059!1.87e-11!11;UBERON:0005409!2.63e-11!35;UBERON:0000160!4.63e-11!27;UBERON:0000077!1.27e-10!130;UBERON:0000065!1.33e-10!53;UBERON:0004907!6.14e-09!5;UBERON:0001004!9.41e-09!72;UBERON:0005178!4.35e-08!34;UBERON:0002224!4.35e-08!34;UBERON:0005181!8.81e-08!35;UBERON:0001046!1.42e-07!19;UBERON:0001155!1.53e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.94e-23;22!UBERON:0004921;6.08e-19;33!UBERON:0000160;4.96e-18;17!UBERON:0000059;7.19e-16;11!UBERON:0001155;8.76e-13;9!UBERON:0001555;1.30e-10;54!UBERON:0001723;6.22e-10;3!UBERON:0001033;6.22e-10;3!UBERON:0001007;1.37e-08;81!UBERON:0002372;1.46e-08;1!UBERON:0001961;1.46e-08;1!UBERON:0001744;1.46e-08;1!UBERON:0001042;1.46e-08;1!UBERON:0001735;1.46e-08;1!UBERON:0001154;2.02e-08;1!UBERON:0001153;2.02e-08;1!UBERON:0009854;2.02e-08;1!UBERON:0001764;2.69e-08;1!UBERON:0001825;2.69e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.23e-20,25;UBERON:0000160,3.97e-18,17;UBERON:0004921,2.06e-17,118;UBERON:0001007,6.02e-17,145;UBERON:0001555,6.02e-17,145;UBERON:0007026,6.02e-17,145;UBERON:0000059,6.25e-16,11;UBERON:0004119,5.44e-15,160;UBERON:0000925,5.44e-15,160;UBERON:0006595,5.44e-15,160;UBERON:0001155,8.12e-13,9;UBERON:0001723,7.46e-10,3;UBERON:0001033,7.46e-10,3;UBERON:0010056,7.46e-10,3;UBERON:0002372,1.52e-08,1;UBERON:0001961,1.52e-08,1;UBERON:0001744,1.52e-08,1;UBERON:0001735,1.52e-08,1;UBERON:0001154,1.88e-08,1;UBERON:0001153,1.88e-08,1;UBERON:0001045,1.88e-08,1;UBERON:0001764,2.50e-08,1;UBERON:0001825,2.50e-08,1;UBERON:0011216,2.30e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0.168776332241266,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96781501668982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,3.22283461275637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.470719003883896,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0.19924798825107,4.69682656402951,0,0,0,0,0,1.79021174675609,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0.583209226766509,0,0,0,0,0,0,0,0,0.83654246567162,0.461701551022782,0,0,0,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.706765357169704,0,5.97157158647103,2.91909962861019,15.8867837682743,0,0,0,0,0,0,0,1.36965233252463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.30428607174726,0,0.225980740780532,0,0,0,2.15106521008283,0,0.213452994739353,0,63.832054799269,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5722253347501,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0,0,3.61224421375539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05656061679314,0,0,0,0,0,0.139879507719444,0,0,0,0.471797825567689,0,0,0,0.867550349813015,0,0.318004350653419,0,109.678192515109,0,0,0,0,0,0,0,0,0,0,0,1.88751557356385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.351742488719241,0.255524855279191,0,0,0,0,0.177404740325278,0,0,0,0,0,0.222462803784138,0,0,3.64353812307926,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02415957822496,0,0,0,0,0.485710993059139,3.50909195193158,0.198950775161368,0,0.11294608203896,0,0.905777061400041,0.385870790539723,0.218559560503957,4.23285566725371,0,25.4530670869756,0,0,0,0,0,0,0,3.03541695629618,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.77204176471275,0.23806443146374,0,0.0620747142958579,0,0,0,2.61260097476354,1.02669990325584,7.40872583160463,7.74599818240905,0.99798106963804,0,0,0,0,0,0,0,0.665756774185513,0,0 | |||
|short_description=p2@CEACAM5 | |||
}} |
Latest revision as of 06:15, 18 September 2015
Short description: | p2@CEACAM5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CEACAM5_5end |
Coexpression cluster: | C249_nonsmall_small_smallcell_occipital_somatostatinoma_maxillary_medial |
Association with transcript: | 0bp_to_ENST00000221992_5end |
EntrezGene: | CEACAM5 |
HGNC: | 1817 |
UniProt: | P06731 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.48e-10 | 3 |
epithelial cell of prostate | 5.68e-10 | 3 |
lung fibroblast | 9.79e-09 | 1 |
peptide hormone secreting cell | 1.13e-08 | 1 |
enteroendocrine cell | 1.13e-08 | 1 |
type D enteroendocrine cell | 1.13e-08 | 1 |
somatostatin secreting cell | 1.13e-08 | 1 |
pancreatic D cell | 1.13e-08 | 1 |
progenitor cell of endocrine pancreas | 1.13e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 2.23e-20 | 25 |
intestine | 3.97e-18 | 17 |
subdivision of digestive tract | 2.06e-17 | 118 |
digestive system | 6.02e-17 | 145 |
digestive tract | 6.02e-17 | 145 |
primitive gut | 6.02e-17 | 145 |
large intestine | 6.25e-16 | 11 |
endoderm-derived structure | 5.44e-15 | 160 |
endoderm | 5.44e-15 | 160 |
presumptive endoderm | 5.44e-15 | 160 |
colon | 8.12e-13 | 9 |
tongue | 7.46e-10 | 3 |
gustatory system | 7.46e-10 | 3 |
future tongue | 7.46e-10 | 3 |
tonsil | 1.52e-08 | 1 |
mucosa-associated lymphoid tissue | 1.52e-08 | 1 |
lymphoid tissue | 1.52e-08 | 1 |
tonsillar ring | 1.52e-08 | 1 |
vermiform appendix | 1.88e-08 | 1 |
caecum | 1.88e-08 | 1 |
midgut | 1.88e-08 | 1 |
maxillary sinus | 2.50e-08 | 1 |
paranasal sinus | 2.50e-08 | 1 |
organ system subdivision | 2.30e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 1.13e-08 | 1 |
paranasal sinus cancer | 2.50e-08 | 1 |
maxillary sinus cancer | 2.50e-08 | 1 |
gastrointestinal system cancer | 2.62e-08 | 14 |
cystadenocarcinoma | 6.68e-08 | 1 |
mucinous cystadenocarcinoma | 6.68e-08 | 1 |