FFCP PHASE1:Hg19::chr2:171571796..171571808,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389058 | |EntrezGene=389058 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14529 | |HGNC=14529 | ||
|TSSclassifier=strong | |||
|UniProt=Q6BEB4 | |UniProt=Q6BEB4 | ||
|association_with_transcript=-48bp_to_NM_001003845,uc002uge.2_5end | |association_with_transcript=-48bp_to_NM_001003845,uc002uge.2_5end | ||
|cluster_id=chr2:171571796..171571808,+ | |||
|coexpression_cluster_id=C55 | |coexpression_cluster_id=C55 | ||
|description=CAGE_peak_4_at_SP5_5end | |description=CAGE_peak_4_at_SP5_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!3.23e-24!5;CL:0000181!5.75e-07!12;CL:0000417!5.75e-07!12;CL:0000668!5.75e-07!12;CL:0000414!5.75e-07!12;CL:0000412!5.75e-07!12;CL:0000182!5.75e-07!12 | |ontology_enrichment_celltype=CL:0002322!3.23e-24!5;CL:0000181!5.75e-07!12;CL:0000417!5.75e-07!12;CL:0000668!5.75e-07!12;CL:0000414!5.75e-07!12;CL:0000412!5.75e-07!12;CL:0000182!5.75e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.02e-24;12!CL:0002563;4.92e-19;4!CL:0002322;3.61e-15;5!CL:0002253;2.49e-10;2!CL:0000148;4.66e-08;10!CL:0002231;2.63e-07;3 | |ontology_enrichment_celltype_v019=CL:0000182;1.02e-24;12!CL:0002563;4.92e-19;4!CL:0002322;3.61e-15;5!CL:0002253;2.49e-10;2!CL:0000148;4.66e-08;10!CL:0002231;2.63e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,9.90e-25,12;CL:0002563,4.70e-19,4;CL:0002322,3.88e-15,5;CL:0000223,4.56e-15,58;CL:0002253,2.27e-10,2;CL:0000148,4.83e-08,10;CL:0000541,4.83e-08,10;CL:0002231,2.63e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.42e-27;11!UBERON:0009497;7.46e-23;13!UBERON:0003104;8.98e-15;31!UBERON:0001041;4.06e-10;30!CL:0000223;2.02e-09;58 | |ontology_enrichment_development_v019=UBERON:0004161;6.42e-27;11!UBERON:0009497;7.46e-23;13!UBERON:0003104;8.98e-15;31!UBERON:0001041;4.06e-10;30!CL:0000223;2.02e-09;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:7;2.02e-07;39 | |ontology_enrichment_disease_v019=DOID:7;2.02e-07;39 | ||
|ontology_enrichment_disease_v019_2=DOID:7,7.50e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0003929!3.90e-07!54 | |ontology_enrichment_uberon=UBERON:0003929!3.90e-07!54 | ||
|ontology_enrichment_uberon_v019=UBERON:0001242;4.92e-19;4!UBERON:0001262;4.92e-19;4!UBERON:0004786;4.92e-19;4!UBERON:0004808;4.92e-19;4!UBERON:0001277;4.92e-19;4!UBERON:0002107;8.97e-16;19!UBERON:0006925;8.97e-16;19!UBERON:0002423;4.47e-12;25!UBERON:0000485;2.62e-11;7!UBERON:0003929;2.62e-11;7!UBERON:0003350;5.18e-10;8!UBERON:0002365;2.59e-09;31!UBERON:0002330;2.59e-09;31!UBERON:0002368;1.65e-08;33 | |ontology_enrichment_uberon_v019=UBERON:0001242;4.92e-19;4!UBERON:0001262;4.92e-19;4!UBERON:0004786;4.92e-19;4!UBERON:0004808;4.92e-19;4!UBERON:0001277;4.92e-19;4!UBERON:0002107;8.97e-16;19!UBERON:0006925;8.97e-16;19!UBERON:0002423;4.47e-12;25!UBERON:0000485;2.62e-11;7!UBERON:0003929;2.62e-11;7!UBERON:0003350;5.18e-10;8!UBERON:0002365;2.59e-09;31!UBERON:0002330;2.59e-09;31!UBERON:0002368;1.65e-08;33 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,4.70e-19,4;UBERON:0001262,4.70e-19,4;UBERON:0004786,4.70e-19,4;UBERON:0004808,4.70e-19,4;UBERON:0001277,4.70e-19,4;UBERON:0003929,3.33e-16,54;UBERON:0002107,8.80e-16,19;UBERON:0006925,8.80e-16,19;UBERON:0008836,8.80e-16,19;UBERON:0008835,1.11e-13,22;UBERON:0003894,1.11e-13,22;UBERON:0009854,4.20e-13,23;UBERON:0007499,4.40e-12,25;UBERON:0009497,4.40e-12,25;UBERON:0000015,4.40e-12,25;UBERON:0002423,4.40e-12,25;UBERON:0006235,4.40e-12,25;UBERON:0004161,4.40e-12,25;UBERON:0009856,1.25e-11,26;UBERON:0005911,1.45e-10,82;UBERON:0003350,5.06e-10,8;UBERON:0002365,8.32e-10,31;UBERON:0002330,8.32e-10,31;UBERON:0000485,5.20e-09,9;UBERON:0002368,1.02e-08,35;UBERON:0002530,8.22e-08,59;UBERON:0004921,3.72e-07,118;UBERON:0000949,7.76e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.397589304964456,1.16193942869518,0.621966330092223,1.26160425437814,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19769940212095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.77976734060731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96841450011276,0,0,0,0,0,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49487848582361,28.9134279067511,28.0213918495966,32.084086874592,0,0,0,0,1.60753148465019,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0.121917924982269,0,0,0,0.485710993059139,0,0,0,0.90356865631168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0.436350690340377,0,0,0,0,0,0.109265571963696,2.53397002022874,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.397589304964456,1.16193942869518,0.621966330092223,1.26160425437814,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19769940212095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.77976734060731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96841450011276,0,0,0,0,0,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49487848582361,28.9134279067511,28.0213918495966,32.084086874592,0,0,0,0,1.60753148465019,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0.121917924982269,0,0,0,0.485710993059139,0,0,0,0.90356865631168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0.436350690340377,0,0,0,0,0,0.109265571963696,2.53397002022874,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p4@SP5 | |short_description=p4@SP5 | ||
}} | }} |
Latest revision as of 03:15, 18 September 2015
Short description: | p4@SP5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SP5_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | -48bp_to_NM_001003845, uc002uge.2_5end |
EntrezGene: | SP5 |
HGNC: | 14529 |
UniProt: | Q6BEB4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 9.90e-25 | 12 |
intestinal epithelial cell | 4.70e-19 | 4 |
embryonic stem cell | 3.88e-15 | 5 |
endodermal cell | 4.56e-15 | 58 |
epithelial cell of large intestine | 2.27e-10 | 2 |
melanocyte | 4.83e-08 | 10 |
melanoblast | 4.83e-08 | 10 |
epithelial cell of prostate | 2.63e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 4.70e-19 | 4 |
wall of intestine | 4.70e-19 | 4 |
gastrointestinal system mucosa | 4.70e-19 | 4 |
gastrointestinal system epithelium | 4.70e-19 | 4 |
intestinal epithelium | 4.70e-19 | 4 |
gut epithelium | 3.33e-16 | 54 |
liver | 8.80e-16 | 19 |
digestive gland | 8.80e-16 | 19 |
liver bud | 8.80e-16 | 19 |
hepatic diverticulum | 1.11e-13 | 22 |
liver primordium | 1.11e-13 | 22 |
digestive tract diverticulum | 4.20e-13 | 23 |
epithelial sac | 4.40e-12 | 25 |
epithelium of foregut-midgut junction | 4.40e-12 | 25 |
anatomical boundary | 4.40e-12 | 25 |
hepatobiliary system | 4.40e-12 | 25 |
foregut-midgut junction | 4.40e-12 | 25 |
septum transversum | 4.40e-12 | 25 |
sac | 1.25e-11 | 26 |
endo-epithelium | 1.45e-10 | 82 |
epithelium of mucosa | 5.06e-10 | 8 |
exocrine gland | 8.32e-10 | 31 |
exocrine system | 8.32e-10 | 31 |
simple columnar epithelium | 5.20e-09 | 9 |
endocrine gland | 1.02e-08 | 35 |
gland | 8.22e-08 | 59 |
subdivision of digestive tract | 3.72e-07 | 118 |
endocrine system | 7.76e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 7.50e-08 | 39 |