FFCP PHASE1:Hg19::chr7:27192185..27192209,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3200 | |EntrezGene=3200 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5104 | |HGNC=5104 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000518451_5end | |association_with_transcript=0bp_to_ENST00000518451_5end | ||
|cluster_id=chr7:27192185..27192209,- | |||
|description=CAGE_peak_1_at_HOXA3_5end | |description=CAGE_peak_1_at_HOXA3_5end | ||
|id=chr7:27192185..27192209,- | |id=chr7:27192185..27192209,- | ||
|ontology_enrichment_celltype=CL:0000136!2.89e-09!15;CL:1000449!3.90e-07!16;CL:1000507!5.66e-07!12;CL:1000494!5.66e-07!12 | |ontology_enrichment_celltype=CL:0000136!2.89e-09!15;CL:1000449!3.90e-07!16;CL:1000507!5.66e-07!12;CL:1000494!5.66e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000136;2.40e-09;13!CL:1000507;8.10e-08;10!CL:1000494;8.10e-08;10!CL:1000449;3.27e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.79e-10,15;CL:1000507,8.68e-08,10;CL:1000494,8.68e-08,10;CL:1000449,3.69e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001008!2.99e-13!45;UBERON:0006554!1.43e-12!44;UBERON:0003064!3.46e-11!37;UBERON:0000489!1.91e-10!32;UBERON:0000080!2.03e-08!18;UBERON:0002120!2.03e-08!18;UBERON:0004875!2.03e-08!18;UBERON:0005721!2.03e-08!18;UBERON:0005754!2.03e-08!18;UBERON:0007297!2.03e-08!18;UBERON:0002113!2.51e-08!27;UBERON:0003918!2.51e-08!27;UBERON:0005095!2.51e-08!27;UBERON:0007687!2.51e-08!27;UBERON:0004876!2.89e-08!20;UBERON:0001046!6.16e-08!19;UBERON:0006555!7.50e-08!17;UBERON:0005103!7.50e-08!17;UBERON:0000083!7.50e-08!17;UBERON:0009201!7.50e-08!17;UBERON:0004819!7.50e-08!17;UBERON:0006553!7.50e-08!17;UBERON:0003074!7.50e-08!17;UBERON:0003060!7.50e-08!17;UBERON:0003887!1.02e-07!21;UBERON:0001013!3.68e-07!14;UBERON:0000059!3.86e-07!11;UBERON:0004211!3.90e-07!16;UBERON:0001285!3.90e-07!16;UBERON:0007684!3.90e-07!16;UBERON:0003220!3.90e-07!16;UBERON:0004208!3.90e-07!16;UBERON:0009773!5.66e-07!12;UBERON:0001231!5.66e-07!12;UBERON:0004810!5.66e-07!12 | |ontology_enrichment_uberon=UBERON:0001008!2.99e-13!45;UBERON:0006554!1.43e-12!44;UBERON:0003064!3.46e-11!37;UBERON:0000489!1.91e-10!32;UBERON:0000080!2.03e-08!18;UBERON:0002120!2.03e-08!18;UBERON:0004875!2.03e-08!18;UBERON:0005721!2.03e-08!18;UBERON:0005754!2.03e-08!18;UBERON:0007297!2.03e-08!18;UBERON:0002113!2.51e-08!27;UBERON:0003918!2.51e-08!27;UBERON:0005095!2.51e-08!27;UBERON:0007687!2.51e-08!27;UBERON:0004876!2.89e-08!20;UBERON:0001046!6.16e-08!19;UBERON:0006555!7.50e-08!17;UBERON:0005103!7.50e-08!17;UBERON:0000083!7.50e-08!17;UBERON:0009201!7.50e-08!17;UBERON:0004819!7.50e-08!17;UBERON:0006553!7.50e-08!17;UBERON:0003074!7.50e-08!17;UBERON:0003060!7.50e-08!17;UBERON:0003887!1.02e-07!21;UBERON:0001013!3.68e-07!14;UBERON:0000059!3.86e-07!11;UBERON:0004211!3.90e-07!16;UBERON:0001285!3.90e-07!16;UBERON:0007684!3.90e-07!16;UBERON:0003220!3.90e-07!16;UBERON:0004208!3.90e-07!16;UBERON:0009773!5.66e-07!12;UBERON:0001231!5.66e-07!12;UBERON:0004810!5.66e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0000489;1.76e-09;29!UBERON:0006554;1.65e-08;30!UBERON:0001008;1.65e-08;30!UBERON:0000059;4.14e-08;11!UBERON:0004905;7.68e-08;8!UBERON:0000982;7.68e-08;8!UBERON:0004770;7.68e-08;8!UBERON:0004211;8.10e-08;10!UBERON:0009773;8.10e-08;10!UBERON:0001231;8.10e-08;10!UBERON:0004810;8.10e-08;10!UBERON:0002113;1.08e-07;24!UBERON:0011143;1.08e-07;24!UBERON:0006555;3.27e-07;15!UBERON:0004819;3.27e-07;15!UBERON:0001285;3.27e-07;15!UBERON:0007684;3.27e-07;15!UBERON:0001013;4.13e-07;14!UBERON:0001134;8.23e-07;16!UBERON:0002036;8.23e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001008,1.87e-11,48;UBERON:0000489,8.99e-11,31;UBERON:0006554,9.21e-11,47;UBERON:0002113,5.79e-09,26;UBERON:0003918,5.79e-09,26;UBERON:0011143,5.79e-09,26;UBERON:0005095,5.79e-09,26;UBERON:0007687,5.79e-09,26;UBERON:0003104,2.32e-08,160;UBERON:0009142,2.32e-08,160;UBERON:0000059,3.80e-08,11;UBERON:0006555,5.67e-08,16;UBERON:0004819,5.67e-08,16;UBERON:0004905,7.29e-08,8;UBERON:0000982,7.29e-08,8;UBERON:0004770,7.29e-08,8;UBERON:0004810,8.68e-08,10;UBERON:0001046,1.08e-07,19;UBERON:0004211,3.69e-07,15;UBERON:0009773,3.69e-07,15;UBERON:0001231,3.69e-07,15;UBERON:0001285,3.69e-07,15;UBERON:0007684,3.69e-07,15;UBERON:0004208,3.69e-07,15;UBERON:0001013,3.97e-07,14;UBERON:0003064,5.15e-07,28 | |||
|phase1_expression=9.99231085988061,7.27941781229343,10.1487170949099,11.0080628188443,9.38618298297304,9.59572376510406,10.1319951267324,3.79031924056099,3.65659879479774,2.21160542851358,2.09340350391728,0,0,21.6591117680082,25.8489953067774,1.34465029290355,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0.77408061658038,0,0,0,0,0,17.322425920756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,44.9382517168688,17.3757654524276,6.32121803460185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.78302643815306,9.02408239144601,11.1531819599834,1.5905718941022,17.5188553308949,0,0,0.087834785693126,10.019899275575,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0.275118041940067,0.208994966536811,3.6178346283706,3.91342888955381,4.35136796594071,0.402829317109147,3.80136052859256,1.95249646038536,1.83831540172934,4.0507097394088,12.9484606011916,17.7378204374674,15.7656072676651,1.53316637465883,1.89853131913626,2.5648244150257,0,0,0,3.47880366186723,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,4.78235777765763,3.05329696473789,0.809364721840658,0.561803226808994,0,0,0,0,0,3.64064544775211,7.90479955997862,0,0,0,0,0,0,0,7.89314397030993,2.98980344345994,4.66250182551036,8.70264178644767,6.28620428354477,15.4584324027377,6.14185625894246,7.08860595413318,7.50264939741229,15.9033277773792,9.48113956015683,0,9.9402685904652,2.21654616100809,1.01736355386293,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0.904760751704678,0,0,0,0,0,0,5.34155856715973,6.48179717607255,6.65889532821094,0,0,0,0,0,0,0,0,1.07470227243418,0.581267877027924,0,0,0,0.207328115540772,0,0.12624243342638,1.07946420296687,3.4378958300245,0,0,1.33675740514321,1.20137223137567,0,0,0,0,5.68795549334222,14.3062578340753,3.381211010224,10.6375246633948,8.32059495290929,7.45901385360212,0,7.19339883343468,0,18.4491345833091,5.76268235746538,0.977208552881205,0,5.543663110534,0,0.871533458600294,0.299918973546171,0,0,0,0,0,4.27910715122155,1.88215698667853,13.9723899334261,0,0,0.394061520403854,0.646882724578552,0.385029108839245,0,0,0,0,0,0,0,0,30.7955644215041,42.0143237690129,16.8184314693836,0,0,0,0,7.52365249319297,11.3703752027992,16.5556914068008,6.64225598535437,4.60922921354258,3.5622281931914,0,0,0.206768026122887,0,0.213455115606889,0,0,0,6.94701861892575,6.1384789315225,6.17452207752762,7.68834895534206,2.04682899626681,4.66476371316462,11.8734453155993,5.39733928309294,3.01854933032316,2.62806899244189,0,5.694308544538,0.120859449591622,2.6065841139427,0.736647911487171,3.67406234126742,14.5672934405374,15.472680965212,8.12159303233341,8.08661039596355,13.3339460760065,7.30696123266303,14.6716764161097,0,0.170093705276516,8.42072072798343,4.62681758070868,17.0696255652627,15.5523829895005,5.3524017339458,4.98645605357235,9.17886494360931,0,0,0,0,0,6.59462474545423,8.79066862256097,6.68326949356763,0,0,0,7.0569624353249,2.7728751080636,2.6095624703442,1.51620229732984,11.386545956037,13.0515024522806,7.92607634969738,2.22580089116843,0,0,0,0,0,0,0,3.38836938193698,0,0,0,0,0,0.949138274156178,0,1.27948895655667,2.56763392820352,0,0,8.63387796399911,15.3740736652191,14.2553006838281,0,0,0,0,5.11798328225697,0,4.50449707646353,13.292110603649,0,0,0,0,0,0.655894752046633,0.608731130888112,1.8589409885985,2.81695602532241,5.44963138375396,3.242218353433,0,2.48332744849418,8.2331977766089,5.92730807327823,0,0,0,0,0,7.06078505825844,0.86101074534246,0,4.43430153536676,1.83778720165568,0,0,0,0,0,0,0.540031437238115,0,2.24330549367694,0,11.7619303670895,0,0,0,0,20.7562546290129,26.2362357081342,26.0358506750376,0,48.0163174574014,0,0,37.5951715635101,16.4213024467555,15.2558671348515,0.605399121573143,161.395724084634,86.9068522232085,0,0,0,12.7002262011326,0,0,0,0,0,0,7.61842532213849,0,0,10.5130374318373,0,0.296964680832639,0,0,0,0,0,0.211125408127993,7.57142355354065,20.9975775803672,0,0,0,0,0,0,0,14.9937976568139,0,0,0,0,0,0,0,13.0499923578263,0,0,4.25497827182285,0.344743373241465,0,0.173624994933292,0,0,0,0,0,0,0,5.15867853830832,18.0063604898885,0,0,0,0,1.5950057986596,8.24378340616761,2.13213910407454,0,0,0,0,0,0,0,0.317873157960757,0,26.7701805381002,0,3.67860687561555,51.7536204160822,19.9914095777547,50.7155020294909,0,0,0,0.067401132980677,3.21031058919516,0,0,0,0,11.4429476826323,2.41981432097328,1.53036380815245,0,11.4245798755014,21.8782083848191,0,0,0,0,42.4068223584391,0,23.0834451985724,0,0,24.8111868903683,9.63121781841053,0,0,0,0.969890164884194,2.47117154736201,0,0,1.19228767021794,0,5.47543871657448,0,0.640358984218058,1.39866726707491,0,0,7.55017990592644,0,0,4.71388069233591,0,0,0,0,0,0,6.38732940334862,0,0,0.558564802544508,0.229160424011684,0,1.19807400299395,0,0,0.134366944973453,0,0,0,0,0,4.4292366681637,0,0,0,0,0,0,0,0.77380195455795,0,0,9.14146204670699,81.986521255002,0,0,9.78767506329171,0,0,0,2.171998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| ||
|short_description=p1@HOXA3 | |short_description=p1@HOXA3 | ||
}} | }} |
Latest revision as of 01:36, 18 September 2015
Short description: | p1@HOXA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXA3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000518451_5end |
EntrezGene: | HOXA3 |
HGNC: | 5104 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.79e-10 | 15 |
kidney tubule cell | 8.68e-08 | 10 |
nephron tubule epithelial cell | 8.68e-08 | 10 |
epithelial cell of nephron | 3.69e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
renal system | 1.87e-11 | 48 |
cavitated compound organ | 8.99e-11 | 31 |
urinary system structure | 9.21e-11 | 47 |
kidney | 5.79e-09 | 26 |
kidney mesenchyme | 5.79e-09 | 26 |
upper urinary tract | 5.79e-09 | 26 |
kidney rudiment | 5.79e-09 | 26 |
kidney field | 5.79e-09 | 26 |
mesenchyme | 2.32e-08 | 160 |
entire embryonic mesenchyme | 2.32e-08 | 160 |
large intestine | 3.80e-08 | 11 |
excretory tube | 5.67e-08 | 16 |
kidney epithelium | 5.67e-08 | 16 |
articulation | 7.29e-08 | 8 |
skeletal joint | 7.29e-08 | 8 |
articular system | 7.29e-08 | 8 |
nephron tubule epithelium | 8.68e-08 | 10 |
hindgut | 1.08e-07 | 19 |
nephron epithelium | 3.69e-07 | 15 |
renal tubule | 3.69e-07 | 15 |
nephron tubule | 3.69e-07 | 15 |
nephron | 3.69e-07 | 15 |
uriniferous tubule | 3.69e-07 | 15 |
nephrogenic mesenchyme | 3.69e-07 | 15 |
adipose tissue | 3.97e-07 | 14 |
intermediate mesoderm | 5.15e-07 | 28 |