FFCP PHASE1:Hg19::chr12:27485785..27485816,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56938 | |EntrezGene=56938 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18984 | |HGNC=18984 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WYA1,F5H402 | |UniProt=Q8WYA1,F5H402 | ||
|association_with_transcript=0bp_to_ENST00000544915,NM_001248002,NM_001248003,NM_001248004,NM_001248005,NM_020183_5end | |association_with_transcript=0bp_to_ENST00000544915,NM_001248002,NM_001248003,NM_001248004,NM_001248005,NM_020183_5end | ||
|cluster_id=chr12:27485785..27485816,+ | |||
|coexpression_cluster_id=C3273 | |||
|description=CAGE_peak_1_at_ARNTL2_5end | |description=CAGE_peak_1_at_ARNTL2_5end | ||
|id=chr12:27485785..27485816,+ | |id=chr12:27485785..27485816,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.89e-22!254;CL:0002321!1.63e-15!248;CL:0000220!1.65e-15!246;CL:0000548!1.46e-11!679;CL:0000004!1.46e-11!679;CL:0000255!1.46e-11!679;CL:0000012!2.30e-11!682;CL:0000076!6.73e-10!62;CL:0002139!7.01e-09!24;CL:0000222!9.90e-09!119;CL:0000223!3.47e-08!59;CL:0002076!6.46e-08!43;CL:0000071!5.53e-07!18;CL:0002546!5.53e-07!18 | |ontology_enrichment_celltype=CL:0000066!6.89e-22!254;CL:0002321!1.63e-15!248;CL:0000220!1.65e-15!246;CL:0000548!1.46e-11!679;CL:0000004!1.46e-11!679;CL:0000255!1.46e-11!679;CL:0000012!2.30e-11!682;CL:0000076!6.73e-10!62;CL:0002139!7.01e-09!24;CL:0000222!9.90e-09!119;CL:0000223!3.47e-08!59;CL:0002076!6.46e-08!43;CL:0000071!5.53e-07!18;CL:0002546!5.53e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002139;5.92e-09;24!CL:0000071;4.86e-07;18!CL:0002076;8.38e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.91e-22,253;CL:0002321,1.85e-15,250;CL:0000076,3.37e-09,63;CL:0002139,6.56e-09,24;CL:0000223,7.87e-09,58;CL:0002076,1.13e-08,42;CL:0000222,1.66e-08,121;CL:0000071,5.27e-07,18;CL:0002546,5.27e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;4.86e-07;18 | |||
|ontology_enrichment_disease=DOID:14566!2.80e-14!239;DOID:162!4.00e-14!235;DOID:305!8.44e-14!106;DOID:0050687!2.28e-12!143 | |ontology_enrichment_disease=DOID:14566!2.80e-14!239;DOID:162!4.00e-14!235;DOID:305!8.44e-14!106;DOID:0050687!2.28e-12!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.75e-14,239;DOID:162,2.50e-14,235;DOID:305,8.08e-14,106;DOID:0050687,2.56e-12,143 | |||
|ontology_enrichment_uberon=UBERON:0000055!2.36e-10!69;UBERON:0001981!4.59e-09!60;UBERON:0007500!4.59e-09!60;UBERON:0004537!4.59e-09!60;UBERON:0006965!4.59e-09!60;UBERON:0002049!9.45e-09!79;UBERON:0007798!9.45e-09!79;UBERON:0000490!1.35e-08!138;UBERON:0001637!5.99e-08!42;UBERON:0003509!5.99e-08!42;UBERON:0004572!5.99e-08!42;UBERON:0003914!2.68e-07!118;UBERON:0001986!5.53e-07!18;UBERON:0004638!5.53e-07!18;UBERON:0004852!5.53e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;2.20e-08;33!UBERON:0004638;4.86e-07;18!UBERON:0001986;4.86e-07;18!UBERON:0004852;4.86e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,5.34e-10,68;UBERON:0007500,1.04e-08,59;UBERON:0001981,1.04e-08,59;UBERON:0004537,1.04e-08,59;UBERON:0006965,1.04e-08,59;UBERON:0000490,1.73e-08,148;UBERON:0002049,1.97e-08,78;UBERON:0007798,1.97e-08,78;UBERON:0001637,5.66e-08,42;UBERON:0003509,5.66e-08,42;UBERON:0004572,5.66e-08,42;UBERON:0003914,1.29e-07,117;UBERON:0004638,5.27e-07,18;UBERON:0001986,5.27e-07,18;UBERON:0004852,5.27e-07,18 | |||
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| ||
|short_description=p1@ARNTL2 | |short_description=p1@ARNTL2 | ||
}} | }} |
Latest revision as of 00:13, 18 September 2015
Short description: | p1@ARNTL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARNTL2_5end |
Coexpression cluster: | C3273_osteosarcoma_endometrial_embryonic_astrocytoma_mucinous_Myoblast_prostate |
Association with transcript: | 0bp_to_ENST00000544915, NM_001248002, NM_001248003, NM_001248004, NM_001248005, NM_020183_5end |
EntrezGene: | ARNTL2 |
HGNC: | 18984 |
UniProt: | Q8WYA1F5H402 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.91e-22 | 253 |
embryonic cell | 1.85e-15 | 250 |
squamous epithelial cell | 3.37e-09 | 63 |
endothelial cell of vascular tree | 6.56e-09 | 24 |
endodermal cell | 7.87e-09 | 58 |
endo-epithelial cell | 1.13e-08 | 42 |
mesodermal cell | 1.66e-08 | 121 |
blood vessel endothelial cell | 5.27e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.27e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
vessel | 5.34e-10 | 68 |
epithelial tube open at both ends | 1.04e-08 | 59 |
blood vessel | 1.04e-08 | 59 |
blood vasculature | 1.04e-08 | 59 |
vascular cord | 1.04e-08 | 59 |
unilaminar epithelium | 1.73e-08 | 148 |
vasculature | 1.97e-08 | 78 |
vascular system | 1.97e-08 | 78 |
artery | 5.66e-08 | 42 |
arterial blood vessel | 5.66e-08 | 42 |
arterial system | 5.66e-08 | 42 |
epithelial tube | 1.29e-07 | 117 |
blood vessel endothelium | 5.27e-07 | 18 |
endothelium | 5.27e-07 | 18 |
cardiovascular system endothelium | 5.27e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.75e-14 | 239 |
cancer | 2.50e-14 | 235 |
carcinoma | 8.08e-14 | 106 |
cell type cancer | 2.56e-12 | 143 |