FFCP PHASE1:Hg19::chr7:22259845..22259864,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9771 | |EntrezGene=9771 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16862 | |HGNC=16862 | ||
|TSSclassifier=strong | |||
|UniProt=C9JHM4 | |UniProt=C9JHM4 | ||
|association_with_transcript=0bp_to_ENST00000420196_5end | |association_with_transcript=0bp_to_ENST00000420196_5end | ||
|cluster_id=chr7:22259845..22259864,- | |||
|coexpression_cluster_id=C1887 | |||
|description=CAGE_peak_5_at_RAPGEF5_5end | |description=CAGE_peak_5_at_RAPGEF5_5end | ||
|id=chr7:22259845..22259864,- | |id=chr7:22259845..22259864,- | ||
|ontology_enrichment_celltype=CL:0002139!1.16e-22!24;CL:0000115!3.25e-18!35;CL:0000071!1.93e-16!18;CL:0002546!1.93e-16!18;CL:0002078!1.69e-12!44;CL:1000413!1.47e-08!9;CL:0005020!7.78e-08!6;CL:0002138!7.78e-08!6;CL:0005022!7.78e-08!6;CL:0000213!1.13e-07!57;CL:0000215!1.13e-07!57;CL:0002543!9.68e-07!6 | |ontology_enrichment_celltype=CL:0002139!1.16e-22!24;CL:0000115!3.25e-18!35;CL:0000071!1.93e-16!18;CL:0002546!1.93e-16!18;CL:0002078!1.69e-12!44;CL:1000413!1.47e-08!9;CL:0005020!7.78e-08!6;CL:0002138!7.78e-08!6;CL:0005022!7.78e-08!6;CL:0000213!1.13e-07!57;CL:0000215!1.13e-07!57;CL:0002543!9.68e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.08e-25;24!CL:0000071;1.42e-18;18!CL:0000115;1.94e-18;36!CL:0002078;1.03e-10;45!CL:1000413;1.32e-09;9!CL:0002138;9.85e-09;6!CL:0002543;1.95e-07;6!CL:0000213;4.88e-07;58!CL:0000215;4.88e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.31e-25,24;CL:0000115,8.42e-22,36;CL:0000071,1.63e-18,18;CL:0002546,1.63e-18,18;CL:0002078,1.67e-15,45;CL:0000213,4.85e-10,58;CL:0000215,4.85e-10,58;CL:1000413,1.55e-09,9;CL:0005020,1.03e-08,6;CL:0002138,1.03e-08,6;CL:0005022,1.03e-08,6;CL:0002543,1.82e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;1.42e-18;18!CL:0005022;9.85e-09;6!UBERON:0004872;1.53e-07;7!UBERON:0006601;1.54e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.59e-66!115;UBERON:0004111!5.02e-37!241;UBERON:0000025!1.51e-34!194;UBERON:0000477!3.60e-33!286;UBERON:0001049!2.20e-26!57;UBERON:0005068!2.20e-26!57;UBERON:0006241!2.20e-26!57;UBERON:0007135!2.20e-26!57;UBERON:0002616!8.61e-22!59;UBERON:0003080!9.02e-21!42;UBERON:0002780!7.98e-20!41;UBERON:0001890!7.98e-20!41;UBERON:0006240!7.98e-20!41;UBERON:0000483!9.21e-20!309;UBERON:0003075!1.53e-19!86;UBERON:0007284!1.53e-19!86;UBERON:0000119!3.18e-19!312;UBERON:0001017!1.03e-18!82;UBERON:0005743!3.50e-18!86;UBERON:0000955!5.10e-18!69;UBERON:0006238!5.10e-18!69;UBERON:0002346!6.50e-18!90;UBERON:0000055!3.81e-17!69;UBERON:0001986!1.93e-16!18;UBERON:0004638!1.93e-16!18;UBERON:0004852!1.93e-16!18;UBERON:0000073!2.09e-16!94;UBERON:0001016!2.09e-16!94;UBERON:0004872!2.95e-16!84;UBERON:0002020!4.68e-16!34;UBERON:0003528!4.68e-16!34;UBERON:0001893!8.83e-16!34;UBERON:0002791!3.28e-15!33;UBERON:0001869!3.04e-14!32;UBERON:0001981!6.73e-14!60;UBERON:0007500!6.73e-14!60;UBERON:0004537!6.73e-14!60;UBERON:0006965!6.73e-14!60;UBERON:0002049!6.84e-14!79;UBERON:0007798!6.84e-14!79;UBERON:0000468!6.87e-14!659;UBERON:0003914!7.35e-14!118;UBERON:0000467!2.17e-13!625;UBERON:0000480!2.76e-13!626;UBERON:0001009!3.38e-13!113;UBERON:0001950!1.81e-12!20;UBERON:0002619!2.39e-12!22;UBERON:0000487!2.53e-12!22;UBERON:0003056!6.67e-12!61;UBERON:0004535!1.10e-11!110;UBERON:0000481!4.18e-11!347;UBERON:0000153!1.39e-10!129;UBERON:0007811!1.39e-10!129;UBERON:0000956!3.18e-10!25;UBERON:0000203!3.18e-10!25;UBERON:0006914!3.87e-10!25;UBERON:0000922!1.02e-09!612;UBERON:0000033!1.99e-09!123;UBERON:0000475!4.47e-09!365;UBERON:0002050!4.66e-09!605;UBERON:0005423!4.66e-09!605;UBERON:0002298!7.54e-09!8;UBERON:0004121!9.36e-09!169;UBERON:0000923!1.09e-08!604;UBERON:0005291!1.09e-08!604;UBERON:0006598!1.09e-08!604;UBERON:0002532!1.09e-08!604;UBERON:0003915!1.47e-08!9;UBERON:0004700!1.47e-08!9;UBERON:0001917!1.47e-08!9;UBERON:0000924!3.56e-08!173;UBERON:0006601!3.56e-08!173;UBERON:0002308!9.76e-08!9;UBERON:0000125!9.76e-08!9;UBERON:0003103!1.86e-07!69;UBERON:0002420!2.84e-07!9;UBERON:0007245!2.84e-07!9;UBERON:0010009!2.84e-07!9;UBERON:0010011!2.84e-07!9;UBERON:0000454!2.84e-07!9;UBERON:0002465!4.01e-07!10;UBERON:0007100!6.44e-07!27;UBERON:0003076!7.69e-07!15;UBERON:0003057!7.69e-07!15;UBERON:0001871!9.82e-07!7 | |ontology_enrichment_uberon=UBERON:0007023!1.59e-66!115;UBERON:0004111!5.02e-37!241;UBERON:0000025!1.51e-34!194;UBERON:0000477!3.60e-33!286;UBERON:0001049!2.20e-26!57;UBERON:0005068!2.20e-26!57;UBERON:0006241!2.20e-26!57;UBERON:0007135!2.20e-26!57;UBERON:0002616!8.61e-22!59;UBERON:0003080!9.02e-21!42;UBERON:0002780!7.98e-20!41;UBERON:0001890!7.98e-20!41;UBERON:0006240!7.98e-20!41;UBERON:0000483!9.21e-20!309;UBERON:0003075!1.53e-19!86;UBERON:0007284!1.53e-19!86;UBERON:0000119!3.18e-19!312;UBERON:0001017!1.03e-18!82;UBERON:0005743!3.50e-18!86;UBERON:0000955!5.10e-18!69;UBERON:0006238!5.10e-18!69;UBERON:0002346!6.50e-18!90;UBERON:0000055!3.81e-17!69;UBERON:0001986!1.93e-16!18;UBERON:0004638!1.93e-16!18;UBERON:0004852!1.93e-16!18;UBERON:0000073!2.09e-16!94;UBERON:0001016!2.09e-16!94;UBERON:0004872!2.95e-16!84;UBERON:0002020!4.68e-16!34;UBERON:0003528!4.68e-16!34;UBERON:0001893!8.83e-16!34;UBERON:0002791!3.28e-15!33;UBERON:0001869!3.04e-14!32;UBERON:0001981!6.73e-14!60;UBERON:0007500!6.73e-14!60;UBERON:0004537!6.73e-14!60;UBERON:0006965!6.73e-14!60;UBERON:0002049!6.84e-14!79;UBERON:0007798!6.84e-14!79;UBERON:0000468!6.87e-14!659;UBERON:0003914!7.35e-14!118;UBERON:0000467!2.17e-13!625;UBERON:0000480!2.76e-13!626;UBERON:0001009!3.38e-13!113;UBERON:0001950!1.81e-12!20;UBERON:0002619!2.39e-12!22;UBERON:0000487!2.53e-12!22;UBERON:0003056!6.67e-12!61;UBERON:0004535!1.10e-11!110;UBERON:0000481!4.18e-11!347;UBERON:0000153!1.39e-10!129;UBERON:0007811!1.39e-10!129;UBERON:0000956!3.18e-10!25;UBERON:0000203!3.18e-10!25;UBERON:0006914!3.87e-10!25;UBERON:0000922!1.02e-09!612;UBERON:0000033!1.99e-09!123;UBERON:0000475!4.47e-09!365;UBERON:0002050!4.66e-09!605;UBERON:0005423!4.66e-09!605;UBERON:0002298!7.54e-09!8;UBERON:0004121!9.36e-09!169;UBERON:0000923!1.09e-08!604;UBERON:0005291!1.09e-08!604;UBERON:0006598!1.09e-08!604;UBERON:0002532!1.09e-08!604;UBERON:0003915!1.47e-08!9;UBERON:0004700!1.47e-08!9;UBERON:0001917!1.47e-08!9;UBERON:0000924!3.56e-08!173;UBERON:0006601!3.56e-08!173;UBERON:0002308!9.76e-08!9;UBERON:0000125!9.76e-08!9;UBERON:0003103!1.86e-07!69;UBERON:0002420!2.84e-07!9;UBERON:0007245!2.84e-07!9;UBERON:0010009!2.84e-07!9;UBERON:0010011!2.84e-07!9;UBERON:0000454!2.84e-07!9;UBERON:0002465!4.01e-07!10;UBERON:0007100!6.44e-07!27;UBERON:0003076!7.69e-07!15;UBERON:0003057!7.69e-07!15;UBERON:0001871!9.82e-07!7 | ||
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|short_description=p5@RAPGEF5 | |short_description=p5@RAPGEF5 | ||
}} | }} |
Latest revision as of 18:42, 17 September 2015
Short description: | p5@RAPGEF5 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RAPGEF5_5end |
Coexpression cluster: | C1887_lung_Endothelial_adipose_heart_spleen_Hepatocyte_penis |
Association with transcript: | 0bp_to_ENST00000420196_5end |
EntrezGene: | RAPGEF5 |
HGNC: | 16862 |
UniProt: | C9JHM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.31e-25 | 24 |
endothelial cell | 8.42e-22 | 36 |
blood vessel endothelial cell | 1.63e-18 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.63e-18 | 18 |
meso-epithelial cell | 1.67e-15 | 45 |
lining cell | 4.85e-10 | 58 |
barrier cell | 4.85e-10 | 58 |
endothelial cell of artery | 1.55e-09 | 9 |
lymphangioblast | 1.03e-08 | 6 |
endothelial cell of lymphatic vessel | 1.03e-08 | 6 |
vascular lymphangioblast | 1.03e-08 | 6 |
vein endothelial cell | 1.82e-07 | 6 |