FFCP PHASE1:Hg19::chr16:70729549..70729555,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55697 | |EntrezGene=55697 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25507 | |HGNC=25507 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NTB8 | |UniProt=Q9NTB8 | ||
|association_with_transcript=-23bp_to_AL137396_5end | |association_with_transcript=-23bp_to_AL137396_5end | ||
|cluster_id=chr16:70729549..70729555,- | |||
|coexpression_cluster_id=C141 | |coexpression_cluster_id=C141 | ||
|description=CAGE_peak_9_at_VAC14_5end | |description=CAGE_peak_9_at_VAC14_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0000358;9.91e-41;1 | |ontology_enrichment_development_v019=UBERON:0000358;9.91e-41;1 | ||
|ontology_enrichment_disease=DOID:3111!1.63e-08!1;DOID:3603!1.63e-08!1 | |ontology_enrichment_disease=DOID:3111!1.63e-08!1;DOID:3603!1.63e-08!1 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001736!1.52e-08!1;UBERON:0006298!1.52e-08!1;UBERON:0002370!3.22e-08!4;UBERON:0005058!3.22e-08!4;UBERON:0009113!3.22e-08!4;UBERON:0003295!3.22e-08!4;UBERON:0005562!3.22e-08!4;UBERON:0003408!4.75e-07!10 | |ontology_enrichment_uberon=UBERON:0001736!1.52e-08!1;UBERON:0006298!1.52e-08!1;UBERON:0002370!3.22e-08!4;UBERON:0005058!3.22e-08!4;UBERON:0009113!3.22e-08!4;UBERON:0003295!3.22e-08!4;UBERON:0005562!3.22e-08!4;UBERON:0003408!4.75e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;7.79e-79;2!UBERON:0005058;7.79e-79;2!UBERON:0009113;7.79e-79;2!UBERON:0004177;2.34e-32;5!UBERON:0005057;2.34e-32;5!UBERON:0000077;7.45e-07;27!UBERON:0002405;7.45e-07;27 | |ontology_enrichment_uberon_v019=UBERON:0002370;7.79e-79;2!UBERON:0005058;7.79e-79;2!UBERON:0009113;7.79e-79;2!UBERON:0004177;2.34e-32;5!UBERON:0005057;2.34e-32;5!UBERON:0000077;7.45e-07;27!UBERON:0002405;7.45e-07;27 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.05e-40,4;UBERON:0005058,4.05e-40,4;UBERON:0009113,4.05e-40,4;UBERON:0003295,4.05e-40,4;UBERON:0005562,4.05e-40,4;UBERON:0003351,3.55e-27,6;UBERON:0004177,1.80e-23,7;UBERON:0005057,1.80e-23,7;UBERON:0000974,8.81e-17,10;UBERON:0003408,8.81e-17,10;UBERON:0001042,8.81e-17,10;UBERON:0009145,8.81e-17,10;UBERON:0006562,2.33e-15,11;UBERON:0009722,2.33e-15,11;UBERON:0007690,2.33e-15,11;UBERON:0008814,8.47e-10,18;UBERON:0001557,2.46e-09,19 | |||
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|short_description=p9@VAC14 | |short_description=p9@VAC14 | ||
}} | }} |
Latest revision as of 16:52, 17 September 2015
Short description: | p9@VAC14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_VAC14_5end |
Coexpression cluster: | C141_Hodgkin_acute_thymus_chronic_vein_CD4_B |
Association with transcript: | -23bp_to_AL137396_5end |
EntrezGene: | VAC14 |
HGNC: | 25507 |
UniProt: | Q9NTB8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 4.05e-40 | 4 |
hemolymphoid system gland | 4.05e-40 | 4 |
thymic region | 4.05e-40 | 4 |
pharyngeal gland | 4.05e-40 | 4 |
thymus primordium | 4.05e-40 | 4 |
pharyngeal epithelium | 3.55e-27 | 6 |
hemopoietic organ | 1.80e-23 | 7 |
immune organ | 1.80e-23 | 7 |
neck | 8.81e-17 | 10 |
gland of gut | 8.81e-17 | 10 |
chordate pharynx | 8.81e-17 | 10 |
pharyngeal region of foregut | 8.81e-17 | 10 |
pharynx | 2.33e-15 | 11 |
entire pharyngeal arch endoderm | 2.33e-15 | 11 |
early pharyngeal endoderm | 2.33e-15 | 11 |
pharyngeal arch system | 8.47e-10 | 18 |
upper respiratory tract | 2.46e-09 | 19 |