FFCP PHASE1:Hg19::chr7:18535300..18535311,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9734 | |EntrezGene=9734 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14065 | |HGNC=14065 | ||
|TSSclassifier=strong | |||
|UniProt=C9J1W4 | |UniProt=C9J1W4 | ||
|association_with_transcript=-21bp_to_ENST00000413380_5end | |association_with_transcript=-21bp_to_ENST00000413380_5end | ||
|cluster_id=chr7:18535300..18535311,+ | |||
|coexpression_cluster_id=C101 | |||
|description=CAGE_peak_20_at_HDAC9_5end | |description=CAGE_peak_20_at_HDAC9_5end | ||
|id=chr7:18535300..18535311,+ | |id=chr7:18535300..18535311,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.47e-09;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3371;2.78e-26;1!DOID:4549;2.78e-26;1!DOID:5861;2.78e-26;1!DOID:6496;2.78e-26;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.78e-26,1;DOID:4549,2.78e-26,1;DOID:5861,2.78e-26,1;DOID:6496,2.78e-26,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.57e-28!57;UBERON:0005068!1.57e-28!57;UBERON:0006241!1.57e-28!57;UBERON:0007135!1.57e-28!57;UBERON:0007023!2.34e-28!115;UBERON:0002780!1.15e-24!41;UBERON:0001890!1.15e-24!41;UBERON:0006240!1.15e-24!41;UBERON:0003080!7.33e-24!42;UBERON:0002616!9.28e-24!59;UBERON:0003075!1.42e-21!86;UBERON:0007284!1.42e-21!86;UBERON:0002346!3.12e-21!90;UBERON:0000955!7.16e-21!69;UBERON:0006238!7.16e-21!69;UBERON:0000073!1.89e-20!94;UBERON:0001016!1.89e-20!94;UBERON:0001017!2.70e-20!82;UBERON:0005743!4.52e-20!86;UBERON:0003056!1.46e-18!61;UBERON:0002020!2.80e-18!34;UBERON:0003528!2.80e-18!34;UBERON:0001893!3.24e-18!34;UBERON:0002791!1.87e-17!33;UBERON:0001869!5.42e-16!32;UBERON:0000153!1.52e-14!129;UBERON:0007811!1.52e-14!129;UBERON:0000033!2.59e-14!123;UBERON:0000924!3.23e-13!173;UBERON:0006601!3.23e-13!173;UBERON:0004121!3.67e-13!169;UBERON:0000956!1.36e-12!25;UBERON:0000203!1.36e-12!25;UBERON:0002619!4.61e-11!22;UBERON:0001950!1.03e-10!20;UBERON:0000200!1.06e-08!6;UBERON:0000025!1.29e-08!194;UBERON:0001894!2.22e-08!7;UBERON:0006222!2.22e-08!7;UBERON:0000477!1.27e-07!286;UBERON:0002308!2.62e-07!9;UBERON:0000125!2.62e-07!9;UBERON:0004111!3.27e-07!241;UBERON:0000475!4.74e-07!365 | |ontology_enrichment_uberon=UBERON:0001049!1.57e-28!57;UBERON:0005068!1.57e-28!57;UBERON:0006241!1.57e-28!57;UBERON:0007135!1.57e-28!57;UBERON:0007023!2.34e-28!115;UBERON:0002780!1.15e-24!41;UBERON:0001890!1.15e-24!41;UBERON:0006240!1.15e-24!41;UBERON:0003080!7.33e-24!42;UBERON:0002616!9.28e-24!59;UBERON:0003075!1.42e-21!86;UBERON:0007284!1.42e-21!86;UBERON:0002346!3.12e-21!90;UBERON:0000955!7.16e-21!69;UBERON:0006238!7.16e-21!69;UBERON:0000073!1.89e-20!94;UBERON:0001016!1.89e-20!94;UBERON:0001017!2.70e-20!82;UBERON:0005743!4.52e-20!86;UBERON:0003056!1.46e-18!61;UBERON:0002020!2.80e-18!34;UBERON:0003528!2.80e-18!34;UBERON:0001893!3.24e-18!34;UBERON:0002791!1.87e-17!33;UBERON:0001869!5.42e-16!32;UBERON:0000153!1.52e-14!129;UBERON:0007811!1.52e-14!129;UBERON:0000033!2.59e-14!123;UBERON:0000924!3.23e-13!173;UBERON:0006601!3.23e-13!173;UBERON:0004121!3.67e-13!169;UBERON:0000956!1.36e-12!25;UBERON:0000203!1.36e-12!25;UBERON:0002619!4.61e-11!22;UBERON:0001950!1.03e-10!20;UBERON:0000200!1.06e-08!6;UBERON:0000025!1.29e-08!194;UBERON:0001894!2.22e-08!7;UBERON:0006222!2.22e-08!7;UBERON:0000477!1.27e-07!286;UBERON:0002308!2.62e-07!9;UBERON:0000125!2.62e-07!9;UBERON:0004111!3.27e-07!241;UBERON:0000475!4.74e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;6.61e-50;2!UBERON:0002757;6.61e-50;2!UBERON:0010134;6.61e-50;2!UBERON:0005408;6.61e-50;2!UBERON:0001899;6.61e-50;2!UBERON:0002426;6.72e-26;1!UBERON:0003831;6.72e-26;1!UBERON:0003898;6.72e-26;1!UBERON:0004830;6.72e-26;1!UBERON:0003830;6.72e-26;1!UBERON:0005175;6.72e-26;1!UBERON:0001774;6.72e-26;1!UBERON:0001103;6.72e-26;1!UBERON:0003296;1.43e-25;4!UBERON:0010133;1.43e-25;4!UBERON:0002784;1.43e-25;4!UBERON:0001894;4.37e-15;7!UBERON:0005090;1.14e-13;2!UBERON:0001630;1.14e-13;2!UBERON:0002418;1.10e-09;3!UBERON:0004755;1.10e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.80e-49,2;UBERON:0002757,1.80e-49,2;UBERON:0010134,1.80e-49,2;UBERON:0005408,1.80e-49,2;UBERON:0001899,1.80e-49,2;UBERON:0002426,3.58e-26,1;UBERON:0003831,3.58e-26,1;UBERON:0003898,3.58e-26,1;UBERON:0004830,3.58e-26,1;UBERON:0003830,3.58e-26,1;UBERON:0005175,3.58e-26,1;UBERON:0001774,3.58e-26,1;UBERON:0001103,3.58e-26,1;UBERON:0010084,3.58e-26,1;UBERON:0003296,2.36e-25,4;UBERON:0010133,2.36e-25,4;UBERON:0002784,2.36e-25,4;UBERON:0001894,5.81e-15,7;UBERON:0006222,5.81e-15,7;UBERON:0005090,8.28e-14,2;UBERON:0001630,8.28e-14,2;UBERON:0002418,1.10e-09,3;UBERON:0004755,1.10e-09,3 | |||
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| ||
|short_description=p20@HDAC9 | |short_description=p20@HDAC9 | ||
}} | }} |
Latest revision as of 14:12, 17 September 2015
Short description: | p20@HDAC9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_HDAC9_5end |
Coexpression cluster: | C101_small_cerebellum_maxillary_colon_parietal_epididymis_merkel |
Association with transcript: | -21bp_to_ENST00000413380_5end |
EntrezGene: | HDAC9 |
HGNC: | 14065 |
UniProt: | C9J1W4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.80e-49 | 2 |
regional part of epithalamus | 1.80e-49 | 2 |
secretory circumventricular organ | 1.80e-49 | 2 |
circumventricular organ | 1.80e-49 | 2 |
epithalamus | 1.80e-49 | 2 |
chest muscle | 3.58e-26 | 1 |
respiratory system muscle | 3.58e-26 | 1 |
skeletal muscle of trunk | 3.58e-26 | 1 |
respiratory system skeletal muscle | 3.58e-26 | 1 |
thoracic segment muscle | 3.58e-26 | 1 |
chest organ | 3.58e-26 | 1 |
muscle of trunk | 3.58e-26 | 1 |
diaphragm | 3.58e-26 | 1 |
future diaphragm | 3.58e-26 | 1 |
gland of diencephalon | 2.36e-25 | 4 |
neuroendocrine gland | 2.36e-25 | 4 |
regional part of diencephalon | 2.36e-25 | 4 |
diencephalon | 5.81e-15 | 7 |
future diencephalon | 5.81e-15 | 7 |
muscle structure | 8.28e-14 | 2 |
muscle organ | 8.28e-14 | 2 |
cartilage tissue | 1.10e-09 | 3 |
skeletal tissue | 1.10e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.78e-26 | 1 |
extraosseous chondrosarcoma | 2.78e-26 | 1 |
myxoid chondrosarcoma | 2.78e-26 | 1 |
extraskeletal myxoid chondrosarcoma | 2.78e-26 | 1 |