FFCP PHASE1:Hg19::chr16:68000690..68000714,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:68000690..68000714,- to FFCP PHASE1:Hg19::chr16:68000690..68000714,-: NSchange) |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6560 | |EntrezGene=6560 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10913 | |HGNC=10913 | ||
|TSSclassifier=strong | |||
|UniProt=F5H066,B4DR04 | |UniProt=F5H066,B4DR04 | ||
|association_with_transcript=66bp_to_ENST00000541864,NM_001145964,uc010vkh.1_5end | |||
|cluster_id=chr16:68000690..68000714,- | |||
|description=CAGE_peak_2_at_SLC12A4_5end | |||
|id=chr16:68000690..68000714,- | |||
|ontology_enrichment_celltype=CL:0000055!8.82e-20!180;CL:0002321!1.96e-19!248;CL:0000220!6.11e-19!246;CL:0000144!3.86e-14!625;CL:0000057!1.03e-13!75;CL:0000548!5.52e-12!679;CL:0000004!5.52e-12!679;CL:0000255!5.52e-12!679;CL:0000012!2.69e-11!682;CL:0002371!1.29e-10!591;CL:0000183!1.35e-10!59;CL:0000222!1.38e-10!119;CL:0000192!6.38e-10!42;CL:0000514!6.38e-10!42;CL:0000187!9.23e-10!54;CL:0000680!1.05e-09!57;CL:0000056!1.05e-09!57;CL:0000355!1.05e-09!57;CL:0000393!2.04e-09!60;CL:0000211!2.04e-09!60;CL:0000066!1.34e-08!254;CL:0000359!6.30e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000192;3.29e-08;43!CL:0000349;5.22e-07;19!CL:0002159;5.30e-07;14!CL:0000359;7.53e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.72e-15,250;CL:0000057,2.07e-13,76;CL:0000192,1.24e-10,43;CL:0000514,1.24e-10,43;CL:0000187,9.90e-10,55;CL:0000393,1.71e-09,61;CL:0000211,1.71e-09,61;CL:0000680,5.61e-09,58;CL:0000056,5.61e-09,58;CL:0000355,5.61e-09,58;CL:0000222,5.26e-08,121;CL:0000359,3.72e-07,32;CL:0000349,3.96e-07,19;CL:0002159,5.85e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000514;3.29e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!9.12e-14!365;UBERON:0000486!4.14e-11!82;UBERON:0002100!5.80e-11!216;UBERON:0000468!8.51e-11!659;UBERON:0000914!2.37e-10!83;UBERON:0002329!2.37e-10!83;UBERON:0003077!2.37e-10!83;UBERON:0003059!2.37e-10!83;UBERON:0007282!2.37e-10!83;UBERON:0009618!2.37e-10!83;UBERON:0007285!2.37e-10!83;UBERON:0002049!3.66e-10!79;UBERON:0007798!3.66e-10!79;UBERON:0003102!5.68e-10!95;UBERON:0005256!2.64e-09!143;UBERON:0004872!2.90e-09!84;UBERON:0000055!6.23e-09!69;UBERON:0004290!2.16e-08!70;UBERON:0001134!2.84e-08!61;UBERON:0002036!2.84e-08!61;UBERON:0003082!2.84e-08!61;UBERON:0000481!2.86e-08!347;UBERON:0001981!3.89e-08!60;UBERON:0007500!3.89e-08!60;UBERON:0004537!3.89e-08!60;UBERON:0006965!3.89e-08!60;UBERON:0002385!4.08e-08!63;UBERON:0001015!4.08e-08!63;UBERON:0000383!4.08e-08!63;UBERON:0000119!5.35e-08!312;UBERON:0000483!5.79e-08!309;UBERON:0003104!6.75e-08!238;UBERON:0009142!6.75e-08!238;UBERON:0004923!9.96e-08!57;UBERON:0001637!2.05e-07!42;UBERON:0003509!2.05e-07!42;UBERON:0004572!2.05e-07!42;UBERON:0004573!3.98e-07!33;UBERON:0004571!3.98e-07!33;UBERON:0001444!4.54e-07!48;UBERON:0000478!4.95e-07!24;UBERON:0003914!5.23e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;2.60e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,6.07e-10,99;UBERON:0000486,6.68e-10,83;UBERON:0002100,3.33e-08,199;UBERON:0001134,5.94e-08,62;UBERON:0002036,5.94e-08,62;UBERON:0003082,5.94e-08,62;UBERON:0003104,8.78e-08,160;UBERON:0009142,8.78e-08,160;UBERON:0004923,1.00e-07,66;UBERON:0007503,1.29e-07,78;UBERON:0002329,1.60e-07,71;UBERON:0003059,1.60e-07,71;UBERON:0007282,1.60e-07,71;UBERON:0004290,1.60e-07,71;UBERON:0009618,1.60e-07,71;UBERON:0007524,1.74e-07,73;UBERON:0000478,1.91e-07,24;UBERON:0002385,2.72e-07,64;UBERON:0001015,2.72e-07,64;UBERON:0000383,2.72e-07,64;UBERON:0003077,3.18e-07,72;UBERON:0007285,3.18e-07,72;UBERON:0005085,8.21e-07,31 | |||
|phase1_expression=5.99538651592837,6.20891519283851,6.06103937612676,13.009528785907,8.49226079411847,11.3404008133048,2.53299878168311,1.26343974685366,5.74608382039645,5.16041266653169,6.97801167972428,3.27662058195258,3.16520373874144,3.46545788288131,7.95353701746998,1.34465029290355,3.61616716814386,2.19093027116212,4.87932798790507,1.47745269692145,2.44800829493104,0.940364164434263,0.286235987131057,0.136874425072884,0.502170558379211,0.840547463227464,0.164201178899891,0.314843125254717,0,0,0,10.1136334692682,9.638589400904,7.02532619316897,0.46480320348181,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,1.40648818027883,1.80719576192283,2.00535164254356,2.17269778441236,0,1.94653948121054,1.22895262313288,0.665188192387692,1.84453049955565,0.916853528483988,10.5645633604837,5.93255108455087,0,0,0,0,0,0,0.993812036833525,3.4409383804245,0.694281003215189,0,0.838998872419812,2.47606237746061,1.04497483268405,2.06733407335463,1.42306505074684,1.00416183829401,4.43112248820062,1.52054421143703,0.976248230192678,0.367663080345869,2.43042584364528,0.625098097988558,0.673588117878509,0.337834441449967,1.53316637465883,2.84779697870439,0.549605231791222,0,0,11.7745394078484,3.97577561356255,3.92554586160197,15.6242833359598,16.92336062418,4.25602058638028,5.04609840128076,1.06748995729705,4.9333509683432,1.24484414159907,0.404132016209064,0.490385709340376,1.66493170409425,1.15235184896,2.57753575017176,2.18512053781224,0.570471821544449,2.69007624993242,0.117434498643765,0.323745888736263,0.140450806702248,4.08308342509786,0.61417158655884,5.47626640231557,2.37600571456411,1.97813543422845,5.46096817162816,22.2771623963034,0.168336113954066,0.250237039743928,3.87889761677856,1.31693286264251,1.5324389789951,1.05166641234618,0.794025282120147,6.81680615617675,5.76604949810132,2.96704661623387,11.4034616512073,4.94652140344507,13.6549486224183,6.70020682793723,7.08860595413318,3.80004320128675,5.04867548488229,4.41839513483037,5.17267381820198,14.2003837006646,2.41805035746337,2.37384829234683,11.9821728961244,12.2735754265876,13.4798159832832,3.41526377162867,2.65059536642971,2.09149097165133,3.73179798055334,4.03713361401005,0,1.56449532329816,3.85944562915731,1.38134921352481,6.03678306441573,10.8281922250438,0.473227200159376,0.505754070234305,0,0.110293972732394,0.653638332277218,0,0.539325232640658,0.588664395376038,0,0.738155454624648,2.80483547606892,1.2347220339942,4.41026134156626,0,0,0,0,0.737930631258681,3.25978839567199,5.1582634142054,14.6122279234905,9.4497234066933,10.0921405222797,1.95484983186195,7.27954349695705,1.44331342025273,0.695582429850461,9.04046945615827,1.29929802984966,0.925971025153221,0.380508304469197,0.790204397959275,1.71697232418975,0,0,0,6.56136837907439,7.72717789714754,7.93940544557364,6.00042102109084,9.00965209393282,12.651628412452,0,0,0,0,0,0,0.763976851116555,0,0,0.514137463516618,0,0.285826432630578,0.897048674762886,0.87192013766656,0.36669142910475,4.78305348303778,39.3422090437071,0.845302752556,6.64845291462176,3.12022310734098,2.31486636835928,0,1.5985330740966,2.57360388584666,5.96883765930587,13.9950857252731,0.325736184293735,1.77695974371273,1.58390374586686,6.93310567237048,7.84380112740265,3.499054691372,0,0,0,2.63587341040741,6.89171615004683,1.42636905040718,0.868687840005475,0.821905290201534,1.43248770591916,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,2.69921281782108,6.00204625271613,3.25518028439683,3.32753378449291,3.03329280955175,9.30444248700215,3.5142424497814,5.41702979509894,2.27407504055985,2.0694614258501,0.664225598535437,1.10621501125022,6.16873662723388,6.85304051119592,3.0882908142977,0,0,0,8.48757200049526,8.32177197552485,6.95497674658265,8.68377327365719,11.3561860233166,7.01650236082684,3.20347873139252,4.60536524160033,4.18220194973379,10.3892646511494,0.925258162815933,3.55123450626254,2.54594183642808,1.55776328755086,2.09178681227927,0.241718899183244,4.21063587636898,0.460404944679482,2.06666006696292,1.63882051206045,7.47409165268718,3.60959690325929,1.46329140498388,3.13739907670742,1.46139224653261,2.21658420675039,1.13733384070897,1.36074964221213,0.431831832204279,0,2.16757150035082,1.00337954770971,1.27438136522519,1.66215201785745,0.895499018888713,0,0.261435451024901,4.61610225209501,8.20036614249264,2.27764876265012,1.54561517471583,0,0,8.03971753194641,3.25030123018261,3.21367859688319,1.64340221096607,0.924291702687866,1.5350367472613,0.275673144969061,4.40423003959922,2.75531718437034,0.681813019328807,1.4245125703478,4.13212288402445,3.0750410778417,18.7590687367039,1.11273558941105,3.253918845081,17.3146790756852,4.1822236209636,2.15623506123262,1.59691809095107,3.47973196830029,2.22389062924704,1.5743737541619,1.48863347743867,2.53103539774981,2.66882271493355,5.62975140884935,1.28381696410176,5.091251966814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| |phase1_expression=5.99538651592837,6.20891519283851,6.06103937612676,13.009528785907,8.49226079411847,11.3404008133048,2.53299878168311,1.26343974685366,5.74608382039645,5.16041266653169,6.97801167972428,3.27662058195258,3.16520373874144,3.46545788288131,7.95353701746998,1.34465029290355,3.61616716814386,2.19093027116212,4.87932798790507,1.47745269692145,2.44800829493104,0.940364164434263,0.286235987131057,0.136874425072884,0.502170558379211,0.840547463227464,0.164201178899891,0.314843125254717,0,0,0,10.1136334692682,9.638589400904,7.02532619316897,0.46480320348181,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,1.40648818027883,1.80719576192283,2.00535164254356,2.17269778441236,0,1.94653948121054,1.22895262313288,0.665188192387692,1.84453049955565,0.916853528483988,10.5645633604837,5.93255108455087,0,0,0,0,0,0,0.993812036833525,3.4409383804245,0.694281003215189,0,0.838998872419812,2.47606237746061,1.04497483268405,2.06733407335463,1.42306505074684,1.00416183829401,4.43112248820062,1.52054421143703,0.976248230192678,0.367663080345869,2.43042584364528,0.625098097988558,0.673588117878509,0.337834441449967,1.53316637465883,2.84779697870439,0.549605231791222,0,0,11.7745394078484,3.97577561356255,3.92554586160197,15.6242833359598,16.92336062418,4.25602058638028,5.04609840128076,1.06748995729705,4.9333509683432,1.24484414159907,0.404132016209064,0.490385709340376,1.66493170409425,1.15235184896,2.57753575017176,2.18512053781224,0.570471821544449,2.69007624993242,0.117434498643765,0.323745888736263,0.140450806702248,4.08308342509786,0.61417158655884,5.47626640231557,2.37600571456411,1.97813543422845,5.46096817162816,22.2771623963034,0.168336113954066,0.250237039743928,3.87889761677856,1.31693286264251,1.5324389789951,1.05166641234618,0.794025282120147,6.81680615617675,5.76604949810132,2.96704661623387,11.4034616512073,4.94652140344507,13.6549486224183,6.70020682793723,7.08860595413318,3.80004320128675,5.04867548488229,4.41839513483037,5.17267381820198,14.2003837006646,2.41805035746337,2.37384829234683,11.9821728961244,12.2735754265876,13.4798159832832,3.41526377162867,2.65059536642971,2.09149097165133,3.73179798055334,4.03713361401005,0,1.56449532329816,3.85944562915731,1.38134921352481,6.03678306441573,10.8281922250438,0.473227200159376,0.505754070234305,0,0.110293972732394,0.653638332277218,0,0.539325232640658,0.588664395376038,0,0.738155454624648,2.80483547606892,1.2347220339942,4.41026134156626,0,0,0,0,0.737930631258681,3.25978839567199,5.1582634142054,14.6122279234905,9.4497234066933,10.0921405222797,1.95484983186195,7.27954349695705,1.44331342025273,0.695582429850461,9.04046945615827,1.29929802984966,0.925971025153221,0.380508304469197,0.790204397959275,1.71697232418975,0,0,0,6.56136837907439,7.72717789714754,7.93940544557364,6.00042102109084,9.00965209393282,12.651628412452,0,0,0,0,0,0,0.763976851116555,0,0,0.514137463516618,0,0.285826432630578,0.897048674762886,0.87192013766656,0.36669142910475,4.78305348303778,39.3422090437071,0.845302752556,6.64845291462176,3.12022310734098,2.31486636835928,0,1.5985330740966,2.57360388584666,5.96883765930587,13.9950857252731,0.325736184293735,1.77695974371273,1.58390374586686,6.93310567237048,7.84380112740265,3.499054691372,0,0,0,2.63587341040741,6.89171615004683,1.42636905040718,0.868687840005475,0.821905290201534,1.43248770591916,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,2.69921281782108,6.00204625271613,3.25518028439683,3.32753378449291,3.03329280955175,9.30444248700215,3.5142424497814,5.41702979509894,2.27407504055985,2.0694614258501,0.664225598535437,1.10621501125022,6.16873662723388,6.85304051119592,3.0882908142977,0,0,0,8.48757200049526,8.32177197552485,6.95497674658265,8.68377327365719,11.3561860233166,7.01650236082684,3.20347873139252,4.60536524160033,4.18220194973379,10.3892646511494,0.925258162815933,3.55123450626254,2.54594183642808,1.55776328755086,2.09178681227927,0.241718899183244,4.21063587636898,0.460404944679482,2.06666006696292,1.63882051206045,7.47409165268718,3.60959690325929,1.46329140498388,3.13739907670742,1.46139224653261,2.21658420675039,1.13733384070897,1.36074964221213,0.431831832204279,0,2.16757150035082,1.00337954770971,1.27438136522519,1.66215201785745,0.895499018888713,0,0.261435451024901,4.61610225209501,8.20036614249264,2.27764876265012,1.54561517471583,0,0,8.03971753194641,3.25030123018261,3.21367859688319,1.64340221096607,0.924291702687866,1.5350367472613,0.275673144969061,4.40423003959922,2.75531718437034,0.681813019328807,1.4245125703478,4.13212288402445,3.0750410778417,18.7590687367039,1.11273558941105,3.253918845081,17.3146790756852,4.1822236209636,2.15623506123262,1.59691809095107,3.47973196830029,2.22389062924704,1.5743737541619,1.48863347743867,2.53103539774981,2.66882271493355,5.62975140884935,1.28381696410176,5.091251966814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| ||
|short_description=p2@SLC12A4 | |||
}} | }} |
Latest revision as of 12:36, 17 September 2015
Short description: | p2@SLC12A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC12A4_5end |
Coexpression cluster: | NA |
Association with transcript: | 66bp_to_ENST00000541864, NM_001145964, uc010vkh.1_5end |
EntrezGene: | SLC12A4 |
HGNC: | 10913 |
UniProt: | F5H066B4DR04 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.72e-15 | 250 |
fibroblast | 2.07e-13 | 76 |
smooth muscle cell | 1.24e-10 | 43 |
smooth muscle myoblast | 1.24e-10 | 43 |
muscle cell | 9.90e-10 | 55 |
electrically responsive cell | 1.71e-09 | 61 |
electrically active cell | 1.71e-09 | 61 |
muscle precursor cell | 5.61e-09 | 58 |
myoblast | 5.61e-09 | 58 |
multi-potent skeletal muscle stem cell | 5.61e-09 | 58 |
mesodermal cell | 5.26e-08 | 121 |
vascular associated smooth muscle cell | 3.72e-07 | 32 |
extraembryonic cell | 3.96e-07 | 19 |
general ecto-epithelial cell | 5.85e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
surface structure | 6.07e-10 | 99 |
multilaminar epithelium | 6.68e-10 | 83 |
trunk | 3.33e-08 | 199 |
skeletal muscle tissue | 5.94e-08 | 62 |
striated muscle tissue | 5.94e-08 | 62 |
myotome | 5.94e-08 | 62 |
mesenchyme | 8.78e-08 | 160 |
entire embryonic mesenchyme | 8.78e-08 | 160 |
organ component layer | 1.00e-07 | 66 |
epithelial vesicle | 1.29e-07 | 78 |
somite | 1.60e-07 | 71 |
presomitic mesoderm | 1.60e-07 | 71 |
presumptive segmental plate | 1.60e-07 | 71 |
dermomyotome | 1.60e-07 | 71 |
trunk paraxial mesoderm | 1.60e-07 | 71 |
dense mesenchyme tissue | 1.74e-07 | 73 |
extraembryonic structure | 1.91e-07 | 24 |
muscle tissue | 2.72e-07 | 64 |
musculature | 2.72e-07 | 64 |
musculature of body | 2.72e-07 | 64 |
paraxial mesoderm | 3.18e-07 | 72 |
presumptive paraxial mesoderm | 3.18e-07 | 72 |
ectodermal placode | 8.21e-07 | 31 |