FFCP PHASE1:Hg19::chr20:61467735..61467758,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1299 | |EntrezGene=1299 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2219 | |HGNC=2219 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-12bp_to_ENST00000467819,uc002ydn.2_5end | |association_with_transcript=-12bp_to_ENST00000467819,uc002ydn.2_5end | ||
|cluster_id=chr20:61467735..61467758,+ | |||
|description=CAGE_peak_5_at_COL9A3_5end | |description=CAGE_peak_5_at_COL9A3_5end | ||
|id=chr20:61467735..61467758,+ | |id=chr20:61467735..61467758,+ | ||
|ontology_enrichment_celltype=CL:0000188!1.62e-07!9;CL:0000349!7.10e-07!3;CL:0002577!7.10e-07!3 | |ontology_enrichment_celltype=CL:0000188!1.62e-07!9;CL:0000349!7.10e-07!3;CL:0002577!7.10e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002577;2.25e-19;3!CL:0000349;3.34e-15;19!CL:0002536;1.34e-13;2!CL:0000575;1.76e-13;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,3.06e-19,3;CL:0000349,3.24e-15,19;CL:0002536,1.22e-13,2;CL:0000575,1.88e-13,2;CL:0000076,1.34e-07,63;CL:0000066,8.11e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008425;2.22e-07;1 | |||
|ontology_enrichment_disease=DOID:1749!2.76e-07!14 | |ontology_enrichment_disease=DOID:1749!2.76e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.52e-19;14!DOID:5093;3.39e-14;4!DOID:1612;3.39e-14;4!DOID:178;4.88e-07;1!DOID:326;4.88e-07;1!DOID:3978;4.88e-07;1!DOID:3394;4.88e-07;1!DOID:5844;4.88e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.46e-19,14;DOID:5093,4.06e-14,4;DOID:1612,4.06e-14,4;DOID:178,4.60e-07,1;DOID:326,4.60e-07,1;DOID:3978,4.60e-07,1;DOID:3394,4.60e-07,1;DOID:5844,4.60e-07,1;DOID:305,8.98e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001893!1.39e-19!34;UBERON:0001869!1.78e-19!32;UBERON:0002791!1.79e-18!33;UBERON:0002780!2.50e-18!41;UBERON:0001890!2.50e-18!41;UBERON:0006240!2.50e-18!41;UBERON:0001950!9.01e-18!20;UBERON:0003080!1.00e-17!42;UBERON:0002020!3.17e-16!34;UBERON:0003528!3.17e-16!34;UBERON:0003056!4.79e-16!61;UBERON:0002619!8.34e-16!22;UBERON:0000956!1.96e-13!25;UBERON:0000203!1.96e-13!25;UBERON:0000033!7.77e-12!123;UBERON:0000064!8.78e-12!219;UBERON:0000924!9.64e-12!173;UBERON:0006601!9.64e-12!173;UBERON:0002616!1.01e-11!59;UBERON:0004121!1.57e-11!169;UBERON:0000153!1.68e-11!129;UBERON:0007811!1.68e-11!129;UBERON:0001049!3.01e-11!57;UBERON:0005068!3.01e-11!57;UBERON:0006241!3.01e-11!57;UBERON:0007135!3.01e-11!57;UBERON:0000475!5.47e-11!365;UBERON:0007023!6.76e-11!115;UBERON:0000200!2.17e-10!6;UBERON:0002346!4.93e-10!90;UBERON:0003075!6.71e-10!86;UBERON:0007284!6.71e-10!86;UBERON:0000955!9.88e-10!69;UBERON:0006238!9.88e-10!69;UBERON:0005631!1.55e-09!14;UBERON:0000158!1.55e-09!14;UBERON:0001017!6.17e-08!82;UBERON:0001987!6.21e-08!4;UBERON:0004340!6.21e-08!4;UBERON:0005743!6.87e-08!86;UBERON:0000369!3.54e-07!4;UBERON:0002435!3.54e-07!4;UBERON:0000204!3.54e-07!4;UBERON:0010082!3.54e-07!4;UBERON:0000073!3.78e-07!94;UBERON:0001016!3.78e-07!94;UBERON:0001443!5.93e-07!11;UBERON:0000305!7.57e-07!7;UBERON:0000483!8.23e-07!309 | |ontology_enrichment_uberon=UBERON:0001893!1.39e-19!34;UBERON:0001869!1.78e-19!32;UBERON:0002791!1.79e-18!33;UBERON:0002780!2.50e-18!41;UBERON:0001890!2.50e-18!41;UBERON:0006240!2.50e-18!41;UBERON:0001950!9.01e-18!20;UBERON:0003080!1.00e-17!42;UBERON:0002020!3.17e-16!34;UBERON:0003528!3.17e-16!34;UBERON:0003056!4.79e-16!61;UBERON:0002619!8.34e-16!22;UBERON:0000956!1.96e-13!25;UBERON:0000203!1.96e-13!25;UBERON:0000033!7.77e-12!123;UBERON:0000064!8.78e-12!219;UBERON:0000924!9.64e-12!173;UBERON:0006601!9.64e-12!173;UBERON:0002616!1.01e-11!59;UBERON:0004121!1.57e-11!169;UBERON:0000153!1.68e-11!129;UBERON:0007811!1.68e-11!129;UBERON:0001049!3.01e-11!57;UBERON:0005068!3.01e-11!57;UBERON:0006241!3.01e-11!57;UBERON:0007135!3.01e-11!57;UBERON:0000475!5.47e-11!365;UBERON:0007023!6.76e-11!115;UBERON:0000200!2.17e-10!6;UBERON:0002346!4.93e-10!90;UBERON:0003075!6.71e-10!86;UBERON:0007284!6.71e-10!86;UBERON:0000955!9.88e-10!69;UBERON:0006238!9.88e-10!69;UBERON:0005631!1.55e-09!14;UBERON:0000158!1.55e-09!14;UBERON:0001017!6.17e-08!82;UBERON:0001987!6.21e-08!4;UBERON:0004340!6.21e-08!4;UBERON:0005743!6.87e-08!86;UBERON:0000369!3.54e-07!4;UBERON:0002435!3.54e-07!4;UBERON:0000204!3.54e-07!4;UBERON:0010082!3.54e-07!4;UBERON:0000073!3.78e-07!94;UBERON:0001016!3.78e-07!94;UBERON:0001443!5.93e-07!11;UBERON:0000305!7.57e-07!7;UBERON:0000483!8.23e-07!309 | ||
|ontology_enrichment_uberon_v019=UBERON:0001987;1.15e-14;4!UBERON:0000305;1.87e-14;7!UBERON:0000964;3.10e-14;4!UBERON:0010409;3.10e-14;4!UBERON:0003343;7.72e-14;4!UBERON:0004785;7.72e-14;4!UBERON:0000478;7.63e-12;24!UBERON:0005631;3.77e-10;10!UBERON:0000158;3.77e-10;10!UBERON:0000974;2.15e-09;6!UBERON:0000997;4.88e-07;1!UBERON:0005056;4.88e-07;1!UBERON:0004176;4.88e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.69e-21,14;UBERON:0000158,5.69e-21,14;UBERON:0001987,1.44e-14,4;UBERON:0004340,1.44e-14,4;UBERON:0000305,1.50e-14,7;UBERON:0000964,4.06e-14,4;UBERON:0010409,4.06e-14,4;UBERON:0004348,4.06e-14,4;UBERON:0005427,4.06e-14,4;UBERON:0003343,9.43e-14,4;UBERON:0004785,9.43e-14,4;UBERON:0004871,9.53e-13,8;UBERON:0000478,7.45e-12,24;UBERON:0003124,1.60e-08,7;UBERON:0004923,1.86e-07,66;UBERON:0004121,2.37e-07,171;UBERON:0000924,2.37e-07,171;UBERON:0006601,2.37e-07,171;UBERON:0000997,3.21e-07,1;UBERON:0005056,3.21e-07,1 | |||
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| ||
|short_description=p5@COL9A3 | |short_description=p5@COL9A3 | ||
}} | }} |
Latest revision as of 11:43, 17 September 2015
Short description: | p5@COL9A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL9A3_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000467819, uc002ydn.2_5end |
EntrezGene: | COL9A3 |
HGNC: | 2219 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 3.06e-19 | 3 |
extraembryonic cell | 3.24e-15 | 19 |
amniotic epithelial cell | 1.22e-13 | 2 |
corneal epithelial cell | 1.88e-13 | 2 |
squamous epithelial cell | 1.34e-07 | 63 |
epithelial cell | 8.11e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.69e-21 | 14 |
membranous layer | 5.69e-21 | 14 |
placenta | 1.44e-14 | 4 |
allantois | 1.44e-14 | 4 |
amnion | 1.50e-14 | 7 |
cornea | 4.06e-14 | 4 |
eye surface | 4.06e-14 | 4 |
optic eminence | 4.06e-14 | 4 |
corneal primordium | 4.06e-14 | 4 |
mucosa of oral region | 9.43e-14 | 4 |
respiratory system mucosa | 9.43e-14 | 4 |
somatic layer of lateral plate mesoderm | 9.53e-13 | 8 |
extraembryonic structure | 7.45e-12 | 24 |
chorion | 1.60e-08 | 7 |
organ component layer | 1.86e-07 | 66 |
ectoderm-derived structure | 2.37e-07 | 171 |
ectoderm | 2.37e-07 | 171 |
presumptive ectoderm | 2.37e-07 | 171 |
mammalian vulva | 3.21e-07 | 1 |
external female genitalia | 3.21e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.46e-19 | 14 |
thoracic cancer | 4.06e-14 | 4 |
breast cancer | 4.06e-14 | 4 |
vascular disease | 4.60e-07 | 1 |
ischemia | 4.60e-07 | 1 |
extrinsic cardiomyopathy | 4.60e-07 | 1 |
myocardial ischemia | 4.60e-07 | 1 |
myocardial infarction | 4.60e-07 | 1 |
carcinoma | 8.98e-07 | 106 |