FFCP PHASE1:Hg19::chr20:61288249..61288259,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=28231 | |EntrezGene=28231 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=10953 | |HGNC=10953 | ||
|TSSclassifier=strong | |||
|UniProt=Q96BD0 | |UniProt=Q96BD0 | ||
|association_with_transcript=442bp_to_AF187817,CU677405,DQ892857,DQ896104_5end | |association_with_transcript=442bp_to_AF187817,CU677405,DQ892857,DQ896104_5end | ||
|cluster_id=chr20:61288249..61288259,+ | |||
|coexpression_cluster_id=C360 | |coexpression_cluster_id=C360 | ||
|description=CAGE_peak_12_at_SLCO4A1_5end | |description=CAGE_peak_12_at_SLCO4A1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002536!5.54e-11!2;CL:0000349!1.18e-07!3;CL:0002577!1.18e-07!3;CL:0002541!1.43e-07!3;CL:0000240!4.02e-07!6;CL:0000311!4.02e-07!6;CL:0000079!4.02e-07!6;CL:0000237!4.02e-07!6;CL:0000036!4.02e-07!6;CL:0000357!4.02e-07!6;CL:0000114!4.02e-07!6 | |ontology_enrichment_celltype=CL:0002536!5.54e-11!2;CL:0000349!1.18e-07!3;CL:0002577!1.18e-07!3;CL:0002541!1.43e-07!3;CL:0000240!4.02e-07!6;CL:0000311!4.02e-07!6;CL:0000079!4.02e-07!6;CL:0000237!4.02e-07!6;CL:0000036!4.02e-07!6;CL:0000357!4.02e-07!6;CL:0000114!4.02e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.97e-72;19!CL:0002536;5.51e-57;2!CL:0002577;1.01e-38;3!CL:0002541;3.86e-38;3!CL:0002537;5.23e-07;5 | |ontology_enrichment_celltype_v019=CL:0000349;1.97e-72;19!CL:0002536;5.51e-57;2!CL:0002577;1.01e-38;3!CL:0002541;3.86e-38;3!CL:0002537;5.23e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.97e-72,19;CL:0002536,8.47e-57,2;CL:0002577,1.01e-38,3;CL:0002541,3.19e-38,3;CL:0002537,5.08e-07,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!1.64e-07!106 | |ontology_enrichment_disease=DOID:305!1.64e-07!106 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.11e-27!14;UBERON:0000158!3.11e-27!14;UBERON:0003124!1.17e-17!7;UBERON:0000478!3.55e-15!24;UBERON:0001987!7.77e-12!4;UBERON:0004340!7.77e-12!4;UBERON:0000305!1.38e-11!7;UBERON:0004871!3.84e-10!8;UBERON:0004923!1.41e-09!57;UBERON:0001557!5.42e-08!19;UBERON:0000476!1.43e-07!3;UBERON:0000920!1.43e-07!3;UBERON:0001042!2.49e-07!10;UBERON:0009145!2.49e-07!10;UBERON:0001723!4.13e-07!3;UBERON:0001033!4.13e-07!3;UBERON:0010056!4.13e-07!3 | |ontology_enrichment_uberon=UBERON:0005631!3.11e-27!14;UBERON:0000158!3.11e-27!14;UBERON:0003124!1.17e-17!7;UBERON:0000478!3.55e-15!24;UBERON:0001987!7.77e-12!4;UBERON:0004340!7.77e-12!4;UBERON:0000305!1.38e-11!7;UBERON:0004871!3.84e-10!8;UBERON:0004923!1.41e-09!57;UBERON:0001557!5.42e-08!19;UBERON:0000476!1.43e-07!3;UBERON:0000920!1.43e-07!3;UBERON:0001042!2.49e-07!10;UBERON:0009145!2.49e-07!10;UBERON:0001723!4.13e-07!3;UBERON:0001033!4.13e-07!3;UBERON:0010056!4.13e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.65e-70;10!UBERON:0000158;3.65e-70;10!UBERON:0000478;1.82e-57;24!UBERON:0003124;3.86e-38;3!UBERON:0000920;3.86e-38;3!UBERON:0000305;6.30e-37;7!UBERON:0001987;2.37e-29;4!UBERON:0004923;1.49e-10;55 | |ontology_enrichment_uberon_v019=UBERON:0005631;3.65e-70;10!UBERON:0000158;3.65e-70;10!UBERON:0000478;1.82e-57;24!UBERON:0003124;3.86e-38;3!UBERON:0000920;3.86e-38;3!UBERON:0000305;6.30e-37;7!UBERON:0001987;2.37e-29;4!UBERON:0004923;1.49e-10;55 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.60e-98,14;UBERON:0000158,4.60e-98,14;UBERON:0003124,1.55e-64,7;UBERON:0000478,1.82e-57,24;UBERON:0000920,3.19e-38,3;UBERON:0000305,7.12e-37,7;UBERON:0004871,2.19e-32,8;UBERON:0001987,2.37e-29,4;UBERON:0004340,2.37e-29,4;UBERON:0004923,3.53e-21,66 | |||
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|short_description=p12@SLCO4A1 | |short_description=p12@SLCO4A1 | ||
}} | }} |
Latest revision as of 11:12, 17 September 2015
Short description: | p12@SLCO4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SLCO4A1_5end |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | 442bp_to_AF187817, CU677405, DQ892857, DQ896104_5end |
EntrezGene: | SLCO4A1 |
HGNC: | 10953 |
UniProt: | Q96BD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.97e-72 | 19 |
amniotic epithelial cell | 8.47e-57 | 2 |
placental epithelial cell | 1.01e-38 | 3 |
chorionic membrane mesenchymal stem cell | 3.19e-38 | 3 |
amnion mesenchymal stem cell | 5.08e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.60e-98 | 14 |
membranous layer | 4.60e-98 | 14 |
chorion | 1.55e-64 | 7 |
extraembryonic structure | 1.82e-57 | 24 |
egg chorion | 3.19e-38 | 3 |
amnion | 7.12e-37 | 7 |
somatic layer of lateral plate mesoderm | 2.19e-32 | 8 |
placenta | 2.37e-29 | 4 |
allantois | 2.37e-29 | 4 |
organ component layer | 3.53e-21 | 66 |