FFCP PHASE1:Hg19::chr19:35739871..35739882,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51599 | |EntrezGene=51599 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29572 | |HGNC=29572 | ||
|TSSclassifier=strong | |||
|UniProt=B4DKL4 | |UniProt=B4DKL4 | ||
|association_with_transcript=-22bp_to_ENST00000427250_5end | |association_with_transcript=-22bp_to_ENST00000427250_5end | ||
|cluster_id=chr19:35739871..35739882,+ | |||
|coexpression_cluster_id=C1817 | |||
|description=CAGE_peak_3_at_LSR_5end | |description=CAGE_peak_3_at_LSR_5end | ||
|id=chr19:35739871..35739882,+ | |id=chr19:35739871..35739882,+ | ||
|ontology_enrichment_celltype=CL:0000066!5.63e-24!254;CL:0002076!2.25e-11!43;CL:0000223!3.18e-11!59 | |ontology_enrichment_celltype=CL:0000066!5.63e-24!254;CL:0002076!2.25e-11!43;CL:0000223!3.18e-11!59 | ||
|ontology_enrichment_celltype_v019=CL:0002076;5.76e-10;42!CL:1000497;3.34e-07;17!CL:0002518;3.34e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.17e-26,253;CL:0000223,1.88e-12,58;CL:0002076,3.29e-12,42;CL:1000497,3.57e-07,17;CL:0002518,3.57e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000223;2.77e-07;58 | |||
|ontology_enrichment_disease=DOID:305!5.25e-21!106;DOID:0050687!3.77e-13!143;DOID:1749!4.05e-08!14;DOID:299!5.39e-08!25 | |ontology_enrichment_disease=DOID:305!5.25e-21!106;DOID:0050687!3.77e-13!143;DOID:1749!4.05e-08!14;DOID:299!5.39e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;4.64e-09;14!DOID:299;9.66e-09;25!DOID:305;7.68e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.07e-20,106;DOID:0050687,7.06e-13,143;DOID:1749,5.83e-09,14;DOID:299,9.20e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.31e-15!169;UBERON:0000925!1.31e-15!169;UBERON:0006595!1.31e-15!169;UBERON:0005177!2.54e-13!107;UBERON:0001007!9.67e-12!155;UBERON:0001555!9.67e-12!155;UBERON:0007026!9.67e-12!155;UBERON:0004921!1.76e-11!129;UBERON:0004185!1.76e-11!129;UBERON:0000077!2.00e-10!130;UBERON:0001008!7.78e-10!45;UBERON:0000466!1.06e-09!126;UBERON:0006554!1.27e-09!44;UBERON:0007023!2.16e-09!115;UBERON:0001041!2.88e-09!98;UBERON:0005172!6.71e-09!55;UBERON:0005173!6.71e-09!55;UBERON:0000464!7.60e-09!104;UBERON:0005911!1.06e-08!82;UBERON:0000489!1.24e-08!32;UBERON:0001004!1.75e-08!72;UBERON:0009569!1.99e-08!113;UBERON:0002113!3.61e-08!27;UBERON:0003918!3.61e-08!27;UBERON:0005095!3.61e-08!27;UBERON:0007687!3.61e-08!27;UBERON:0000058!2.24e-07!26;UBERON:0000064!4.31e-07!219;UBERON:0000065!7.22e-07!53 | |ontology_enrichment_uberon=UBERON:0004119!1.31e-15!169;UBERON:0000925!1.31e-15!169;UBERON:0006595!1.31e-15!169;UBERON:0005177!2.54e-13!107;UBERON:0001007!9.67e-12!155;UBERON:0001555!9.67e-12!155;UBERON:0007026!9.67e-12!155;UBERON:0004921!1.76e-11!129;UBERON:0004185!1.76e-11!129;UBERON:0000077!2.00e-10!130;UBERON:0001008!7.78e-10!45;UBERON:0000466!1.06e-09!126;UBERON:0006554!1.27e-09!44;UBERON:0007023!2.16e-09!115;UBERON:0001041!2.88e-09!98;UBERON:0005172!6.71e-09!55;UBERON:0005173!6.71e-09!55;UBERON:0000464!7.60e-09!104;UBERON:0005911!1.06e-08!82;UBERON:0000489!1.24e-08!32;UBERON:0001004!1.75e-08!72;UBERON:0009569!1.99e-08!113;UBERON:0002113!3.61e-08!27;UBERON:0003918!3.61e-08!27;UBERON:0005095!3.61e-08!27;UBERON:0007687!3.61e-08!27;UBERON:0000058!2.24e-07!26;UBERON:0000064!4.31e-07!219;UBERON:0000065!7.22e-07!53 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.97e-11;30!UBERON:0001008;1.97e-11;30!UBERON:0002113;2.83e-08;24!UBERON:0011143;2.83e-08;24!UBERON:0000489;8.24e-08;29!UBERON:0004807;9.35e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,9.08e-16,101;UBERON:0004119,1.76e-15,160;UBERON:0000925,1.76e-15,160;UBERON:0006595,1.76e-15,160;UBERON:0001008,5.47e-14,48;UBERON:0006554,9.55e-14,47;UBERON:0001007,1.89e-11,145;UBERON:0001555,1.89e-11,145;UBERON:0007026,1.89e-11,145;UBERON:0009569,6.60e-11,112;UBERON:0004921,7.01e-11,118;UBERON:0005172,2.17e-10,54;UBERON:0005173,2.17e-10,54;UBERON:0005911,4.04e-10,82;UBERON:0002113,1.50e-09,26;UBERON:0003918,1.50e-09,26;UBERON:0011143,1.50e-09,26;UBERON:0005095,1.50e-09,26;UBERON:0007687,1.50e-09,26;UBERON:0000489,4.52e-09,31;UBERON:0001041,4.72e-08,87;UBERON:0002417,5.54e-08,60;UBERON:0000916,5.54e-08,60;UBERON:0005631,2.28e-07,14;UBERON:0000158,2.28e-07,14;UBERON:0005153,4.65e-07,37 | |||
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| ||
|short_description=p3@LSR | |short_description=p3@LSR | ||
}} | }} |
Latest revision as of 10:58, 17 September 2015
Short description: | p3@LSR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LSR_5end |
Coexpression cluster: | C1817_Alveolar_smallcell_acantholytic_Hepatocyte_squamous_liver_mesothelioma |
Association with transcript: | -22bp_to_ENST00000427250_5end |
EntrezGene: | LSR |
HGNC: | 29572 |
UniProt: | B4DKL4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.17e-26 | 253 |
endodermal cell | 1.88e-12 | 58 |
endo-epithelial cell | 3.29e-12 | 42 |
kidney cell | 3.57e-07 | 17 |
kidney epithelial cell | 3.57e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 9.08e-16 | 101 |
endoderm-derived structure | 1.76e-15 | 160 |
endoderm | 1.76e-15 | 160 |
presumptive endoderm | 1.76e-15 | 160 |
renal system | 5.47e-14 | 48 |
urinary system structure | 9.55e-14 | 47 |
digestive system | 1.89e-11 | 145 |
digestive tract | 1.89e-11 | 145 |
primitive gut | 1.89e-11 | 145 |
subdivision of trunk | 6.60e-11 | 112 |
subdivision of digestive tract | 7.01e-11 | 118 |
abdomen element | 2.17e-10 | 54 |
abdominal segment element | 2.17e-10 | 54 |
endo-epithelium | 4.04e-10 | 82 |
kidney | 1.50e-09 | 26 |
kidney mesenchyme | 1.50e-09 | 26 |
upper urinary tract | 1.50e-09 | 26 |
kidney rudiment | 1.50e-09 | 26 |
kidney field | 1.50e-09 | 26 |
cavitated compound organ | 4.52e-09 | 31 |
foregut | 4.72e-08 | 87 |
abdominal segment of trunk | 5.54e-08 | 60 |
abdomen | 5.54e-08 | 60 |
extraembryonic membrane | 2.28e-07 | 14 |
membranous layer | 2.28e-07 | 14 |
epithelial bud | 4.65e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.07e-20 | 106 |
cell type cancer | 7.06e-13 | 143 |
squamous cell carcinoma | 5.83e-09 | 14 |
adenocarcinoma | 9.20e-09 | 25 |