FFCP PHASE1:Hg19::chr19:35739679..35739690,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=51599 | |EntrezGene=51599 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=29572 | |HGNC=29572 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=-91bp_to_ENST00000347609,uc002nyp.2_5end | |association_with_transcript=-91bp_to_ENST00000347609,uc002nyp.2_5end | ||
|cluster_id=chr19:35739679..35739690,+ | |||
|coexpression_cluster_id=C1817 | |coexpression_cluster_id=C1817 | ||
|description=CAGE_peak_6_at_LSR_5end | |description=CAGE_peak_6_at_LSR_5end | ||
Latest revision as of 10:57, 17 September 2015
| Short description: | p6@LSR |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_LSR_5end |
| Coexpression cluster: | C1817_Alveolar_smallcell_acantholytic_Hepatocyte_squamous_liver_mesothelioma |
| Association with transcript: | -91bp_to_ENST00000347609, uc002nyp.2_5end |
| EntrezGene: | LSR |
| HGNC: | 29572 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@LSR |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 1.19e-18 | 253 |
| embryonic stem cell | 2.87e-13 | 5 |
| kidney tubule cell | 6.17e-09 | 10 |
| nephron tubule epithelial cell | 6.17e-09 | 10 |
| kidney cell | 1.20e-08 | 17 |
| kidney epithelial cell | 1.20e-08 | 17 |
| epithelial cell of prostate | 1.28e-08 | 3 |
| epithelial cell of nephron | 7.66e-08 | 15 |
| extraembryonic cell | 1.09e-07 | 19 |
| endodermal cell | 1.60e-07 | 58 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| extraembryonic membrane | 1.36e-13 | 14 |
| membranous layer | 1.36e-13 | 14 |
| abdomen element | 6.74e-10 | 54 |
| abdominal segment element | 6.74e-10 | 54 |
| nephron tubule epithelium | 6.17e-09 | 10 |
| urinary system structure | 6.85e-09 | 47 |
| chorion | 8.83e-09 | 7 |
| epithelium of foregut-midgut junction | 9.19e-09 | 25 |
| anatomical boundary | 9.19e-09 | 25 |
| hepatobiliary system | 9.19e-09 | 25 |
Showing 1 to 10 of 30 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 6.69e-14 | 106 |
| adenocarcinoma | 2.76e-12 | 25 |
| thoracic cancer | 5.13e-11 | 4 |
| breast cancer | 5.13e-11 | 4 |
| cell type cancer | 5.04e-10 | 143 |
| squamous cell carcinoma | 2.70e-08 | 14 |
Showing 1 to 6 of 6 entries
