FFCP PHASE1:Hg19::chr20:6104233..6104244,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:6104233..6104244,-
|short_description=p12@FERMT1
|description=CAGE_peak_12_at_FERMT1_5end
|association_with_transcript=-42bp_to_ENST00000217289,ENST000003...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55612 | |EntrezGene=55612 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15889 | |HGNC=15889 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BQL6,F8W9F0,Q49AC8,Q54A15 | |UniProt=Q9BQL6,F8W9F0,Q49AC8,Q54A15 | ||
|association_with_transcript=-42bp_to_ENST00000217289,ENST00000339538,NM_017671,uc002wmr.2,uc002wms.2,uc010gbt.2_5end | |||
|cluster_id=chr20:6104233..6104244,- | |||
|description=CAGE_peak_12_at_FERMT1_5end | |||
|id=chr20:6104233..6104244,- | |||
|ontology_enrichment_celltype=CL:0000066!2.78e-30!254;CL:0000223!7.52e-18!59;CL:0002076!1.49e-17!43;CL:0002251!1.19e-11!21;CL:0002368!7.42e-08!13;CL:0002322!3.75e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002368;6.35e-11;13!CL:0002166;1.55e-08;3!CL:0000307;1.55e-08;3!CL:0000182;3.22e-08;12!CL:1001319;5.12e-07;1!CL:1000600;5.12e-07;1!CL:0002252;5.12e-07;1!CL:0002076;5.23e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.61e-16,253;CL:0000223,5.25e-12,58;CL:0002368,5.33e-11,13;CL:0002166,8.74e-09,3;CL:0000068,1.62e-08,3;CL:0000069,1.62e-08,3;CL:0000307,1.62e-08,3;CL:0000377,1.62e-08,3;CL:0000182,3.59e-08,12;CL:0002076,1.60e-07,42;CL:1001319,4.31e-07,1;CL:1000600,4.31e-07,1;CL:0002252,6.12e-07,1;CL:0002327,8.70e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.65e-11;30!UBERON:0009497;2.63e-11;13!UBERON:0004161;5.83e-09;11!CL:0000377;1.55e-08;3!CL:0000223;4.03e-07;58 | |||
|ontology_enrichment_disease=DOID:305!7.18e-28!106;DOID:0050687!7.82e-22!143;DOID:1749!1.63e-12!14;DOID:162!4.86e-10!235;DOID:14566!7.01e-10!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.49e-10;14!DOID:0050619;1.91e-07;1!DOID:1357;1.91e-07;1!DOID:5409;5.13e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.75e-15,106;DOID:0050687,9.54e-12,143;DOID:1749,7.24e-10,14;DOID:0050619,1.98e-07,1;DOID:1357,1.98e-07,1;DOID:5409,5.15e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.47e-24!169;UBERON:0000925!1.47e-24!169;UBERON:0006595!1.47e-24!169;UBERON:0001007!1.83e-22!155;UBERON:0001555!1.83e-22!155;UBERON:0007026!1.83e-22!155;UBERON:0004921!4.03e-19!129;UBERON:0004185!4.03e-19!129;UBERON:0000077!4.52e-16!130;UBERON:0001004!4.76e-15!72;UBERON:0000065!3.91e-13!53;UBERON:0005911!1.87e-11!82;UBERON:0001041!7.25e-11!98;UBERON:0000072!5.04e-10!46;UBERON:0008947!4.73e-09!38;UBERON:0003258!4.73e-09!38;UBERON:0005153!4.78e-09!37;UBERON:0000344!1.70e-08!12;UBERON:0000161!3.02e-08!35;UBERON:0003929!4.53e-08!54;UBERON:0003729!1.25e-07!5;UBERON:0000481!2.42e-07!347;UBERON:0001046!4.10e-07!19;UBERON:0000063!4.29e-07!97;UBERON:0003104!5.28e-07!238;UBERON:0009142!5.28e-07!238;UBERON:0001557!7.40e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;1.47e-07;44!UBERON:0005178;1.69e-07;34!UBERON:0002224;1.69e-07;34!UBERON:0001764;1.91e-07;1!UBERON:0001825;1.91e-07;1!UBERON:0004645;5.12e-07;1!UBERON:0001256;5.12e-07;1!UBERON:0001259;5.12e-07;1!UBERON:0000072;5.70e-07;37!UBERON:0005181;6.22e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.04e-10,118;UBERON:0004119,4.35e-10,160;UBERON:0000925,4.35e-10,160;UBERON:0006595,4.35e-10,160;UBERON:0001007,5.73e-09,145;UBERON:0001555,5.73e-09,145;UBERON:0007026,5.73e-09,145;UBERON:0001041,1.34e-08,87;UBERON:0005177,2.29e-08,101;UBERON:0005911,6.83e-08,82;UBERON:0005178,1.91e-07,34;UBERON:0002224,1.91e-07,34;UBERON:0001764,1.98e-07,1;UBERON:0001825,1.98e-07,1;UBERON:0001004,2.19e-07,74;UBERON:0005181,3.30e-07,35;UBERON:0000065,3.50e-07,54;UBERON:0004645,4.31e-07,1;UBERON:0001256,4.31e-07,1;UBERON:0001259,4.31e-07,1;UBERON:0005153,6.24e-07,37;UBERON:0001911,8.70e-07,4;UBERON:0001708,8.70e-07,4;UBERON:0008895,8.70e-07,4;UBERON:0005333,8.70e-07,4;UBERON:0008425,8.70e-07,4;UBERON:0005311,8.70e-07,4 | |||
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| ||
|short_description=p12@FERMT1 | |||
}} | }} |
Latest revision as of 10:47, 17 September 2015
Short description: | p12@FERMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_FERMT1_5end |
Coexpression cluster: | NA |
Association with transcript: | -42bp_to_ENST00000217289, ENST00000339538, NM_017671, uc002wmr.2, uc002wms.2, uc010gbt.2_5end |
EntrezGene: | FERMT1 |
HGNC: | 15889 |
UniProt: | Q9BQL6F8W9F0Q49AC8Q54A15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.61e-16 | 253 |
endodermal cell | 5.25e-12 | 58 |
respiratory epithelial cell | 5.33e-11 | 13 |
epithelial cell of Malassez | 8.74e-09 | 3 |
duct epithelial cell | 1.62e-08 | 3 |
branched duct epithelial cell | 1.62e-08 | 3 |
tracheal epithelial cell | 1.62e-08 | 3 |
tracheoblast | 1.62e-08 | 3 |
hepatocyte | 3.59e-08 | 12 |
endo-epithelial cell | 1.60e-07 | 42 |
bladder cell | 4.31e-07 | 1 |
lower urinary tract cell | 4.31e-07 | 1 |
epithelial cell of esophagus | 6.12e-07 | 1 |
mammary gland epithelial cell | 8.70e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 2.04e-10 | 118 |
endoderm-derived structure | 4.35e-10 | 160 |
endoderm | 4.35e-10 | 160 |
presumptive endoderm | 4.35e-10 | 160 |
digestive system | 5.73e-09 | 145 |
digestive tract | 5.73e-09 | 145 |
primitive gut | 5.73e-09 | 145 |
foregut | 1.34e-08 | 87 |
trunk region element | 2.29e-08 | 101 |
endo-epithelium | 6.83e-08 | 82 |
thoracic cavity element | 1.91e-07 | 34 |
thoracic cavity | 1.91e-07 | 34 |
maxillary sinus | 1.98e-07 | 1 |
paranasal sinus | 1.98e-07 | 1 |
respiratory system | 2.19e-07 | 74 |
thoracic segment organ | 3.30e-07 | 35 |
respiratory tract | 3.50e-07 | 54 |
urinary bladder urothelium | 4.31e-07 | 1 |
wall of urinary bladder | 4.31e-07 | 1 |
mucosa of urinary bladder | 4.31e-07 | 1 |
epithelial bud | 6.24e-07 | 37 |
mammary gland | 8.70e-07 | 4 |
jaw skeleton | 8.70e-07 | 4 |
splanchnocranium | 8.70e-07 | 4 |
mammary bud | 8.70e-07 | 4 |
mammary ridge | 8.70e-07 | 4 |
mammary placode | 8.70e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.75e-15 | 106 |
cell type cancer | 9.54e-12 | 143 |
squamous cell carcinoma | 7.24e-10 | 14 |
paranasal sinus cancer | 1.98e-07 | 1 |
maxillary sinus cancer | 1.98e-07 | 1 |
lung small cell carcinoma | 5.15e-07 | 4 |