FFCP PHASE1:Hg19::chr20:6104062..6104096,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:6104062..6104096,-
|short_description=p3@FERMT1
|description=CAGE_peak_3_at_FERMT1_5end
|association_with_transcript=94bp_to_ENST00000217289,ENST000003395...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55612 | |EntrezGene=55612 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15889 | |HGNC=15889 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BQL6,F8W9F0,Q49AC8,Q54A15 | |UniProt=Q9BQL6,F8W9F0,Q49AC8,Q54A15 | ||
|association_with_transcript=94bp_to_ENST00000217289,ENST00000339538,NM_017671,uc002wmr.2,uc002wms.2,uc010gbt.2_5end | |||
|cluster_id=chr20:6104062..6104096,- | |||
|description=CAGE_peak_3_at_FERMT1_5end | |||
|id=chr20:6104062..6104096,- | |||
|ontology_enrichment_celltype=CL:0000066!6.40e-26!254;CL:0002076!1.58e-18!43;CL:0000223!1.40e-17!59;CL:0002368!5.26e-11!13;CL:0002251!1.10e-10!21;CL:0002202!5.77e-08!9;CL:0002632!5.77e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.22e-25;42!CL:0002368;2.45e-21;13!CL:0002251;1.70e-17;20!CL:0002202;5.24e-15;9!CL:0002632;5.24e-15;9!CL:0002159;8.14e-11;14!CL:0000244;1.13e-07;4!CL:0000731;1.13e-07;4!CL:0000349;2.09e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.26e-42,253;CL:0002076,1.48e-33,42;CL:0000223,3.79e-31,58;CL:0002368,3.11e-21,13;CL:0002251,1.25e-17,20;CL:0002202,6.66e-15,9;CL:0002632,6.66e-15,9;CL:0002159,7.57e-11,14;CL:0000244,9.24e-08,4;CL:0000731,9.24e-08,4;CL:0000349,1.38e-07,19;CL:0000076,6.70e-07,63;CL:0002321,9.64e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000223;5.28e-16;58 | |||
|ontology_enrichment_disease=DOID:305!5.21e-16!106;DOID:0050687!6.28e-13!143;DOID:1749!1.88e-10!14;DOID:162!9.75e-08!235;DOID:14566!1.27e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.59e-17;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.27e-17,14;DOID:305,4.79e-17,106;DOID:0050687,1.38e-13,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.02e-21!169;UBERON:0000925!1.02e-21!169;UBERON:0006595!1.02e-21!169;UBERON:0001007!1.13e-16!155;UBERON:0001555!1.13e-16!155;UBERON:0007026!1.13e-16!155;UBERON:0000077!8.59e-16!130;UBERON:0004921!1.48e-14!129;UBERON:0004185!1.48e-14!129;UBERON:0001004!1.15e-11!72;UBERON:0000481!1.23e-10!347;UBERON:0000064!1.34e-10!219;UBERON:0001041!4.87e-10!98;UBERON:0000065!1.09e-09!53;UBERON:0005911!1.27e-09!82;UBERON:0003104!3.91e-09!238;UBERON:0009142!3.91e-09!238;UBERON:0000464!5.91e-09!104;UBERON:0000466!2.82e-08!126;UBERON:0008947!2.86e-08!38;UBERON:0003258!2.86e-08!38;UBERON:0005153!3.88e-08!37;UBERON:0000072!5.88e-08!46;UBERON:0000063!2.14e-07!97;UBERON:0000344!5.50e-07!12;UBERON:0000475!9.12e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0005911;5.36e-11;36!UBERON:0004807;3.82e-10;22!UBERON:0007196;8.95e-10;15!UBERON:0001558;8.95e-10;15!UBERON:0000344;1.04e-09;20!UBERON:0000065;1.12e-09;44!UBERON:0000365;2.45e-09;5!UBERON:0000486;6.18e-09;12!UBERON:0000072;8.72e-09;37!UBERON:0001004;5.27e-08;65!UBERON:0005910;1.15e-07;6!UBERON:0003350;1.39e-07;8!UBERON:0003729;2.38e-07;13!UBERON:0002075;2.65e-07;18!UBERON:0005631;5.43e-07;10!UBERON:0000158;5.43e-07;10!UBERON:0003343;9.59e-07;4!UBERON:0004785;9.59e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.64e-23,160;UBERON:0000925,5.64e-23,160;UBERON:0006595,5.64e-23,160;UBERON:0001007,2.23e-15,145;UBERON:0001555,2.23e-15,145;UBERON:0007026,2.23e-15,145;UBERON:0001004,1.81e-14,74;UBERON:0005911,2.42e-13,82;UBERON:0000065,1.50e-11,54;UBERON:0004921,2.47e-11,118;UBERON:0005177,3.32e-10,101;UBERON:0008947,8.56e-10,38;UBERON:0003258,8.56e-10,38;UBERON:0000344,8.88e-10,20;UBERON:0007196,1.18e-09,15;UBERON:0001558,1.18e-09,15;UBERON:0000365,1.98e-09,5;UBERON:0001041,2.36e-09,87;UBERON:0005631,2.73e-09,14;UBERON:0000158,2.73e-09,14;UBERON:0005153,6.23e-09,37;UBERON:0000072,6.25e-09,47;UBERON:0005157,5.93e-08,47;UBERON:0005910,9.65e-08,6;UBERON:0003350,1.33e-07,8;UBERON:0006554,1.51e-07,47;UBERON:0003729,2.11e-07,13;UBERON:0002075,2.17e-07,18;UBERON:0001008,2.73e-07,48;UBERON:0005178,2.93e-07,34;UBERON:0002224,2.93e-07,34;UBERON:0004807,3.05e-07,28;UBERON:0000161,5.68e-07,36;UBERON:0003124,5.77e-07,7;UBERON:0005181,6.01e-07,35;UBERON:0003343,8.29e-07,4;UBERON:0004785,8.29e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,3.44027511102112,5.58240934377942,8.95609625733706,5.53910654279752,0,0,0,0,0,0.487932798790507,0.123121058076788,0.408001382488506,0.313454721478088,0,0.684372125364421,0,0.840547463227464,0.328402357799783,0.787107813136792,0,0,0,11.0330546937471,17.1687373703603,17.7481924880058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,2.3858578411533,0,0.472674085820339,0,0.351339142772504,0.196468613246569,4.37154345951051,2.59549109949101,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,3.92484646928281,0,0.12663051166458,0,0.573673241497627,0.354668382198357,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0.448346041655403,0,0,0,0.204154171254893,0,0,0,0,0,0,0.168336113954066,0,0.277064115484183,0,0,0,0.340296549480063,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0.161646056818812,0,0.10075209822764,0,17.58673763786,20.1832129237218,15.2006435556172,0.487894824518382,0.530119073285941,0.69716365721711,0.725627385107593,0.252320850875628,0,0,0,0,0,0,1.30137480043828,1.18009283054671,1.20505514941741,0.110293972732394,1.08939722046203,0.949082476444386,0.404493924480493,0.392442930250692,1.15424147083917,0,0,0.4115740113314,0,0,0,0.590789906681404,0,1.35287282397425,0,9.10927368891592,5.62008766288098,16.7883383927424,3.79612625149971,0,0,0,0.463721619900307,0.352226082707465,0,0,0,0,0,0,0,0,3.74935335947108,16.1262843070905,15.4534855994201,26.2406471519345,14.5316969256981,17.2522205624345,0,0,0,0,0,0,0,0,3.4214489204541,0,0,0,0,0,0.1466765716419,0,0,0.845302752556,0,0,0,0,0,0,0,0,0.325736184293735,0,1.58390374586686,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0.173767228936166,0.195801157462741,0,0,0,0,1.21251028578504,1.66435439510497,2.72151263996712,0.744323423456331,0.153461973288062,0,0,0,0.482561763430822,0,0.925258162815933,0.532685175939381,1.23190734020714,0,0.697262270759755,1.32945394550784,16.0405176242628,12.7992574620896,0.114814448164607,0.364182336013434,0.131124414959424,3.15839729035188,1.07821471946181,0.784349769176855,0,1.47772280450026,0,0.170093705276516,0.215915916102139,0,0.541892875087706,0,3.82314409567557,4.98645605357235,2.0148727924996,0,0,0.512900250232778,0.656029291399411,0,0.206082023295445,0.0915694648183434,0.165018999841176,10.3367796839311,4.55042172225565,0,0.290012154876366,0.154048617114644,0,0.275673144969061,0.429680979473094,0.290033387828457,0.681813019328807,0.267096106940212,14.875642382488,20.7565272754315,11.2299186995234,6.2717824130441,0.464845549297286,0,0,0,0,0,0.55597265731176,0,0,0.316379424718726,0,0,0,0,0.78494864019923,0,0.274537029736055,0.353437207037059,0.202182481573316,0,0.421258456238981,0,0.974853958525138,0,0,0.141405431953713,0,0.551365343546124,0.66343897524122,0,0,0,0.202910376962704,0,0.281695602532241,0.143411352204052,0.196498082026242,0,0,0,0,0,0,16.5502033887881,7.37332503089366,17.4225575778116,0.282431402330337,11.6236450621232,13.47771805341,3.99087138183008,14.9320210134524,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0.0711418433484141,0,0,0,0,0.649243880549111,0,0.228234679033192,0,0,0,0,0,0,0.343505344755765,0,0,0,0.390776190804081,0,0,0.270455678475983,0.66614393599564,0,0.18714054040822,0,0,0.111443384277478,2.27308917445131,6.20735660317994,0.296964680832639,5.52889263778618,0.994147647766298,0.422008249231538,0.111308705022906,0,9.50064336575971,0,0.828851746593443,0,0.20453736500431,0.369254416383208,0,14.1093311301303,0.358042349351218,0,0.394573622547734,0,0,0,0.278304294485554,0,0,0,0,2.50345586228099,2.03402920234213,0,0,0.291604613383254,0,0,0.361789315876224,0,0.221158519862449,0,0.219385397153973,0.32681539055697,3.06732237412927,0.615602068030377,0,0.46112780877612,2.2439411102443,1.19512109114209,1.91400695839152,1.92354946143911,2.13213910407454,0,0.470940769185074,0.166211681900156,0,0,0,0,0,0.421996129056054,0.326465616318295,0.989471500037586,2.380275037163,0.995261931078505,0.530745387020035,0,0.593042257361244,0.494255755786011,0.208843899010911,0.471807930864739,0,0,0,0.978323094660449,0.728341138602278,0,0,0,0.063186579628488,0,0.207376382794494,7.31119259977904,3.64091151463049,4.08112793929393,19.1155887636734,0,0,0,5.19359706296202,11.3176968554523,0,0.859930162358083,0.387025325156341,0.438535902517113,0.164230914106418,0.290967049465258,0,0,1.78154502040776,0,0.443175571691151,2.93327074102205,2.24444696704294,1.92107695265417,0.39961921916426,5.76361668616424,0,0,10.6600550511231,1.11827282008889,0.707082103850386,0.271808412147228,0.209205692624666,0.101998217636322,0,0,0.273810757783986,0,0.429765441419957,0,0,0,0,0.599037001496973,0,0,0,0,1.16495949527454,1.26053091691558,1.40106959247983,1.21326378937533,0,0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| ||
|short_description=p3@FERMT1 | |||
}} | }} |
Latest revision as of 10:42, 17 September 2015
Short description: | p3@FERMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FERMT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 94bp_to_ENST00000217289, ENST00000339538, NM_017671, uc002wmr.2, uc002wms.2, uc010gbt.2_5end |
EntrezGene: | FERMT1 |
HGNC: | 15889 |
UniProt: | Q9BQL6F8W9F0Q49AC8Q54A15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.26e-42 | 253 |
endo-epithelial cell | 1.48e-33 | 42 |
endodermal cell | 3.79e-31 | 58 |
respiratory epithelial cell | 3.11e-21 | 13 |
epithelial cell of alimentary canal | 1.25e-17 | 20 |
epithelial cell of tracheobronchial tree | 6.66e-15 | 9 |
epithelial cell of lower respiratory tract | 6.66e-15 | 9 |
general ecto-epithelial cell | 7.57e-11 | 14 |
transitional epithelial cell | 9.24e-08 | 4 |
urothelial cell | 9.24e-08 | 4 |
extraembryonic cell | 1.38e-07 | 19 |
squamous epithelial cell | 6.70e-07 | 63 |
embryonic cell | 9.64e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.27e-17 | 14 |
carcinoma | 4.79e-17 | 106 |
cell type cancer | 1.38e-13 | 143 |