FFCP PHASE1:Hg19::chr3:190580437..190580450,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=647309 | |EntrezGene=647309 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=40049 | |HGNC=40049 | ||
|TSSclassifier=strong | |||
|UniProt=G5E9I9,A6NCL1 | |UniProt=G5E9I9,A6NCL1 | ||
|association_with_transcript=14bp_to_ENST00000456552,NM_001146686,uc011bsl.1_5end | |association_with_transcript=14bp_to_ENST00000456552,NM_001146686,uc011bsl.1_5end | ||
|cluster_id=chr3:190580437..190580450,- | |||
|coexpression_cluster_id=C158 | |||
|description=CAGE_peak_1_at_GMNC_5end | |description=CAGE_peak_1_at_GMNC_5end | ||
|id=chr3:190580437..190580450,- | |id=chr3:190580437..190580450,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002564;2.98e-17;3!CL:0002602;2.35e-12;2!CL:0000515;7.63e-09;3!CL:0000056;7.92e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,5.52e-17,3;CL:0002602,1.98e-12,2;CL:0000515,8.04e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0010122;9.57e-12;2!UBERON:0000358;5.36e-07;1!CL:0000515;7.92e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.90e-21!57;UBERON:0005068!7.90e-21!57;UBERON:0006241!7.90e-21!57;UBERON:0007135!7.90e-21!57;UBERON:0007023!2.40e-18!115;UBERON:0001017!6.94e-16!82;UBERON:0002780!7.95e-16!41;UBERON:0001890!7.95e-16!41;UBERON:0006240!7.95e-16!41;UBERON:0002616!1.12e-15!59;UBERON:0003080!2.81e-15!42;UBERON:0000955!7.98e-15!69;UBERON:0006238!7.98e-15!69;UBERON:0005743!1.23e-14!86;UBERON:0003075!2.62e-14!86;UBERON:0007284!2.62e-14!86;UBERON:0002020!9.57e-14!34;UBERON:0003528!9.57e-14!34;UBERON:0001893!1.55e-13!34;UBERON:0002346!3.44e-13!90;UBERON:0000073!4.12e-13!94;UBERON:0001016!4.12e-13!94;UBERON:0002791!7.45e-13!33;UBERON:0001869!1.57e-11!32;UBERON:0002308!6.30e-10!9;UBERON:0000125!6.30e-10!9;UBERON:0003056!2.81e-09!61;UBERON:0002619!2.39e-08!22;UBERON:0004121!2.54e-08!169;UBERON:0005174!3.05e-08!5;UBERON:0001137!3.05e-08!5;UBERON:0000924!7.49e-08!173;UBERON:0006601!7.49e-08!173;UBERON:0001950!8.39e-08!20;UBERON:0000033!8.95e-08!123;UBERON:0002420!1.09e-07!9;UBERON:0007245!1.09e-07!9;UBERON:0010009!1.09e-07!9;UBERON:0010011!1.09e-07!9;UBERON:0000454!1.09e-07!9;UBERON:0009663!1.94e-07!7;UBERON:0000475!4.15e-07!365;UBERON:0000956!5.30e-07!25;UBERON:0000203!5.30e-07!25;UBERON:0000153!5.61e-07!129;UBERON:0007811!5.61e-07!129;UBERON:0002298!7.63e-07!8;UBERON:0003076!8.19e-07!15;UBERON:0003057!8.19e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;7.97e-28;5!UBERON:0002216;7.97e-28;5!UBERON:0011134;7.97e-28;5!UBERON:0002209;7.97e-28;5!UBERON:0002213;7.97e-28;5!UBERON:0007844;7.97e-28;5!UBERON:0011138;7.97e-28;5!UBERON:0001130;7.97e-28;5!UBERON:0001066;7.97e-28;5!UBERON:0001468;7.97e-28;5!UBERON:0004905;2.44e-17;8!UBERON:0000982;2.44e-17;8!UBERON:0004770;2.44e-17;8!UBERON:0002242;2.98e-17;3!UBERON:0006444;2.35e-12;2!UBERON:0001995;2.35e-12;2!UBERON:0004715;2.35e-12;2!UBERON:0001873;9.57e-12;2!UBERON:0004765;1.23e-09;26!UBERON:0000075;1.47e-08;16!UBERON:0002418;1.60e-08;3!UBERON:0004755;1.60e-08;3!UBERON:0005383;4.05e-08;3!UBERON:0005382;4.05e-08;3!UBERON:0001301;3.78e-07;1!UBERON:0002336;5.36e-07;1!UBERON:0007195;5.36e-07;1!UBERON:0011215;5.36e-07;1!UBERON:0001018;5.36e-07;1!UBERON:0002473;5.36e-07;1!UBERON:0005340;5.36e-07;1!UBERON:0003544;5.36e-07;1!UBERON:0005970;5.36e-07;1!UBERON:0002316;5.36e-07;1!UBERON:0001020;5.36e-07;1!UBERON:0002437;5.36e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.25e-27,5;UBERON:0002216,1.25e-27,5;UBERON:0011134,1.25e-27,5;UBERON:0002209,1.25e-27,5;UBERON:0002213,1.25e-27,5;UBERON:0005856,1.25e-27,5;UBERON:0005866,1.25e-27,5;UBERON:0005863,1.25e-27,5;UBERON:0007844,1.25e-27,5;UBERON:0011138,1.25e-27,5;UBERON:0001130,1.25e-27,5;UBERON:0001066,1.25e-27,5;UBERON:0001468,1.25e-27,5;UBERON:0004905,3.21e-17,8;UBERON:0000982,3.21e-17,8;UBERON:0004770,3.21e-17,8;UBERON:0002242,5.52e-17,3;UBERON:0003068,5.52e-17,3;UBERON:0002328,5.52e-17,3;UBERON:0004880,5.52e-17,3;UBERON:0006444,1.98e-12,2;UBERON:0001995,1.98e-12,2;UBERON:0004715,1.98e-12,2;UBERON:0001873,6.49e-12,2;UBERON:0010122,6.49e-12,2;UBERON:0003104,1.28e-08,160;UBERON:0009142,1.28e-08,160;UBERON:0002418,1.43e-08,3;UBERON:0004755,1.43e-08,3;UBERON:0000075,1.67e-08,16;UBERON:0005383,3.13e-08,3;UBERON:0005382,3.13e-08,3;UBERON:0001301,3.78e-07,1;UBERON:0002336,6.38e-07,1;UBERON:0011215,6.38e-07,1;UBERON:0001018,6.38e-07,1;UBERON:0002473,6.38e-07,1;UBERON:0005340,6.38e-07,1;UBERON:0003544,6.38e-07,1;UBERON:0005970,6.38e-07,1;UBERON:0002316,6.38e-07,1;UBERON:0001020,6.38e-07,1;UBERON:0002437,6.38e-07,1;UBERON:0007195,6.76e-07,1 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,0,0,0,0,0,0,0.245733936501509,0,0,0,9.2824764720035,1.65698687863958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741800787835671,0,0,0.168336113954066,0,0,0,0.30648779579902,0.300476117813194,0,0.179389635688862,0.213557388818567,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,1.28648187638577,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.31710916013264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.85063856486715,4.16029747645464,0.257207374262142,1.41849132023278,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,2.29723871668228,0,3.4747513600219,16.6435821265811,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,4.53958519360818,1.00034104211935,1.08506009479894,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744323423456331,0.153461973288062,0,0.384417447767103,0.511707249066704,0,0,0,0,0.246381468041427,0,0,0.120859449591622,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0,2.26690225624989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06461206063404,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,2.2594512186427,0,0,0,0,0,0,0,0,0,0,0,0,2.56377770705936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0.146508179271894,36.2867960031045,0,0,0,0,0,0,1.68803299692615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22273980289274,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,1.77148277162768,1.32656082487949,0,0.221158519862449,0,0.438770794307945,0,0,0,0.455768223388005,0,0,0,0,0.274792780205587,0,0,0,0.166211681900156,0,0,0,0,0.317873157960757,0,0,0,0,0,0,0,0,0,0.104421949505455,2.22423738836234,0,0.937057782901357,0,0,0,0,0,0,0,0,0.207376382794494,0,0,0,0,0,0,0.173559738335131,0,0,3.4945333648406,0,0,0.0730893170861856,0,0,0,0.451961481561065,0,0.397429223405979,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0.279282401272254,0,0,0.599037001496973,0.429226048136571,0.446342914883745,0,0,0,0,0,0,0,0,0,2.31545790389679,0.160753148465019,0,0,0,0,0.242998226632099,0,16.3915871182332,1.73100140845494,0,0,0.383830394638891,0,0,0,0,4.32110745600634,0.326587360109409,0,0.574647645245373,0,0,3.51725360827398,1.32506888912221,0.646414781807753,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.500763722825999,0.573409195690071,2.44043913381075,0.931446044120752,0.138348634936231,0,0,0,0,0,0,0,0.233713309847224,0,0,0.754703705257725,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0,0.521745061811734,0,1.14241563650639,0,0,0.107410557042488,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.449604575675217,0,0.319267718114302,0.205116364240755,0.252071696221718,0.0691572524642179,0.645902582527404,0,0,0,0,0,0,0,0,0.300841313397029,0.20170506870352,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0.992422356778588,0,0,0.535701835878287,0.336283722218824,0,0,0,0,0,0,0.263091094251396,0.118193840883968,0.222462803784138,0.313972371402056,0.157115589916002,0,1.82631744101899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,1.18818560130834,0.8453114551668,0.679708458751268,0,0,0,0,0,0,0,0,0.430018749454354,0,0.407948941145488,0,0,0,0.924351257262837,0.432626562123789,0.126166424835079,0,0,0,0,0,0,0.227336094654718,0,0,1.13776295448085,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0.665320713092027,0,0,0,0,2.34640942403454,0.366724332548599,0.406896178315738,0,0,0 | |phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,0,0,0,0,0,0,0.245733936501509,0,0,0,9.2824764720035,1.65698687863958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741800787835671,0,0,0.168336113954066,0,0,0,0.30648779579902,0.300476117813194,0,0.179389635688862,0.213557388818567,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,1.28648187638577,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.31710916013264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.85063856486715,4.16029747645464,0.257207374262142,1.41849132023278,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,2.29723871668228,0,3.4747513600219,16.6435821265811,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,4.53958519360818,1.00034104211935,1.08506009479894,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744323423456331,0.153461973288062,0,0.384417447767103,0.511707249066704,0,0,0,0,0.246381468041427,0,0,0.120859449591622,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0,2.26690225624989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06461206063404,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,2.2594512186427,0,0,0,0,0,0,0,0,0,0,0,0,2.56377770705936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0.146508179271894,36.2867960031045,0,0,0,0,0,0,1.68803299692615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22273980289274,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,1.77148277162768,1.32656082487949,0,0.221158519862449,0,0.438770794307945,0,0,0,0.455768223388005,0,0,0,0,0.274792780205587,0,0,0,0.166211681900156,0,0,0,0,0.317873157960757,0,0,0,0,0,0,0,0,0,0.104421949505455,2.22423738836234,0,0.937057782901357,0,0,0,0,0,0,0,0,0.207376382794494,0,0,0,0,0,0,0.173559738335131,0,0,3.4945333648406,0,0,0.0730893170861856,0,0,0,0.451961481561065,0,0.397429223405979,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0.279282401272254,0,0,0.599037001496973,0.429226048136571,0.446342914883745,0,0,0,0,0,0,0,0,0,2.31545790389679,0.160753148465019,0,0,0,0,0.242998226632099,0,16.3915871182332,1.73100140845494,0,0,0.383830394638891,0,0,0,0,4.32110745600634,0.326587360109409,0,0.574647645245373,0,0,3.51725360827398,1.32506888912221,0.646414781807753,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.500763722825999,0.573409195690071,2.44043913381075,0.931446044120752,0.138348634936231,0,0,0,0,0,0,0,0.233713309847224,0,0,0.754703705257725,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0,0.521745061811734,0,1.14241563650639,0,0,0.107410557042488,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.449604575675217,0,0.319267718114302,0.205116364240755,0.252071696221718,0.0691572524642179,0.645902582527404,0,0,0,0,0,0,0,0,0.300841313397029,0.20170506870352,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0.992422356778588,0,0,0.535701835878287,0.336283722218824,0,0,0,0,0,0,0.263091094251396,0.118193840883968,0.222462803784138,0.313972371402056,0.157115589916002,0,1.82631744101899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,1.18818560130834,0.8453114551668,0.679708458751268,0,0,0,0,0,0,0,0,0.430018749454354,0,0.407948941145488,0,0,0,0.924351257262837,0.432626562123789,0.126166424835079,0,0,0,0,0,0,0.227336094654718,0,0,1.13776295448085,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0.665320713092027,0,0,0,0,2.34640942403454,0.366724332548599,0.406896178315738,0,0,0 | ||
|short_description=p1@GMNC | |short_description=p1@GMNC | ||
}} | }} |
Latest revision as of 10:12, 17 September 2015
Short description: | p1@GMNC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GMNC_5end |
Coexpression cluster: | C158_adrenal_gastric_temporal_parietal_duodenum_caudate_putamen |
Association with transcript: | 14bp_to_ENST00000456552, NM_001146686, uc011bsl.1_5end |
EntrezGene: | GMNC |
HGNC: | 40049 |
UniProt: | G5E9I9A6NCL1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 5.52e-17 | 3 |
annulus pulposus cell | 1.98e-12 | 2 |
skeletal muscle myoblast | 8.04e-07 | 4 |