FFCP PHASE1:Hg19::chr20:58508359..58508420,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10388 | |EntrezGene=10388 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11490 | |HGNC=11490 | ||
|TSSclassifier=strong | |||
|UniProt=A2A341 | |UniProt=A2A341 | ||
|association_with_transcript=0bp_to_ENST00000446834_5end | |association_with_transcript=0bp_to_ENST00000446834_5end | ||
|cluster_id=chr20:58508359..58508420,- | |||
|coexpression_cluster_id=C2624 | |||
|description=CAGE_peak_2_at_SYCP2_5end | |description=CAGE_peak_2_at_SYCP2_5end | ||
|id=chr20:58508359..58508420,- | |id=chr20:58508359..58508420,- | ||
|ontology_enrichment_celltype=CL:0000039!5.47e-07!7;CL:0000586!5.47e-07!7 | |ontology_enrichment_celltype=CL:0000039!5.47e-07!7;CL:0000586!5.47e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0002535;2.53e-14;2!CL:0000082;2.52e-11;19!CL:0000039;1.13e-08;7!CL:0000586;1.13e-08;7!CL:0002563;2.67e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,2.53e-14,2;CL:0000082,2.67e-11,19;CL:0000039,1.03e-08,7;CL:0000586,1.03e-08,7;CL:0000066,1.41e-07,253;CL:0002563,2.89e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.04e-10;10!UBERON:0005564;6.04e-10;10!UBERON:0008425;4.28e-08;1!UBERON:0000358;1.01e-07;1!UBERON:0008947;3.11e-07;29!UBERON:0001041;5.66e-07;30 | |||
|ontology_enrichment_disease=DOID:1325!1.71e-07!7;DOID:3904!1.71e-07!7 | |||
|ontology_enrichment_disease_v019=DOID:1325;2.50e-22;7!DOID:3904;2.50e-22;7!DOID:3905;5.84e-17;9!DOID:5409;1.60e-14;4!DOID:1324;1.75e-14;15!DOID:0050615;1.52e-13;16!DOID:4362;1.43e-12;5!DOID:299;1.80e-08;25!DOID:178;8.84e-08;1!DOID:326;8.84e-08;1!DOID:3978;8.84e-08;1!DOID:3394;8.84e-08;1!DOID:5844;8.84e-08;1!DOID:6193;1.39e-07;1!DOID:305;2.49e-07;106!DOID:5093;2.76e-07;4!DOID:1612;2.76e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1325,2.92e-22,7;DOID:3904,2.92e-22,7;DOID:305,1.30e-19,106;DOID:3905,6.47e-17,9;DOID:0050687,7.25e-17,143;DOID:1324,1.89e-14,15;DOID:5409,1.89e-14,4;DOID:0050615,1.62e-13,16;DOID:4362,1.43e-12,5;DOID:162,7.16e-12,235;DOID:14566,1.60e-11,239;DOID:0050686,4.02e-11,137;DOID:299,1.85e-08,25;DOID:178,8.84e-08,1;DOID:326,8.84e-08,1;DOID:3978,8.84e-08,1;DOID:3394,8.84e-08,1;DOID:5844,8.84e-08,1;DOID:6193,1.30e-07,1;DOID:5093,2.89e-07,4;DOID:1612,2.89e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001893!7.19e-10!34;UBERON:0002619!9.04e-10!22;UBERON:0002020!9.96e-10!34;UBERON:0003528!9.96e-10!34;UBERON:0001869!1.98e-09!32;UBERON:0001950!2.23e-09!20;UBERON:0002791!6.60e-09!33;UBERON:0000473!1.82e-08!8;UBERON:0000956!2.73e-08!25;UBERON:0000203!2.73e-08!25;UBERON:0002780!1.53e-07!41;UBERON:0001890!1.53e-07!41;UBERON:0006240!1.53e-07!41;UBERON:0001049!2.72e-07!57;UBERON:0005068!2.72e-07!57;UBERON:0006241!2.72e-07!57;UBERON:0007135!2.72e-07!57;UBERON:0003080!2.83e-07!42;UBERON:0000200!3.44e-07!6;UBERON:0002616!6.87e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;2.53e-14;2!UBERON:0004801;2.53e-14;2!UBERON:0000473;2.16e-12;8!UBERON:0005911;8.33e-12;36!UBERON:0004802;2.52e-11;19!UBERON:0000115;2.52e-11;19!UBERON:0000002;1.49e-10;6!UBERON:0001560;1.49e-10;6!UBERON:0002048;1.04e-09;22!UBERON:0004807;1.04e-09;22!UBERON:0000117;1.04e-09;22!UBERON:0000171;1.04e-09;22!UBERON:0000170;1.04e-09;22!UBERON:0002369;4.63e-09;3!UBERON:0001235;4.63e-09;3!UBERON:0006858;4.63e-09;3!UBERON:0003135;4.71e-09;11!UBERON:0004913;1.85e-07;1!UBERON:0003703;1.85e-07;1!UBERON:0001174;1.85e-07;1!UBERON:0004914;1.85e-07;1!UBERON:0001242;2.67e-07;4!UBERON:0001262;2.67e-07;4!UBERON:0004786;2.67e-07;4!UBERON:0004808;2.67e-07;4!UBERON:0001277;2.67e-07;4!UBERON:0003101;8.85e-07;22!UBERON:0000079;8.85e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,2.53e-14,2;UBERON:0004801,2.53e-14,2;UBERON:0000473,1.67e-12,8;UBERON:0004802,2.67e-11,19;UBERON:0000115,2.67e-11,19;UBERON:0000002,1.49e-10,6;UBERON:0001560,1.49e-10,6;UBERON:0005153,9.89e-10,37;UBERON:0002048,1.10e-09,22;UBERON:0000117,1.10e-09,22;UBERON:0000171,1.10e-09,22;UBERON:0000170,1.10e-09,22;UBERON:0005597,1.10e-09,22;UBERON:0000118,1.10e-09,22;UBERON:0003135,3.92e-09,11;UBERON:0002369,4.73e-09,3;UBERON:0001235,4.73e-09,3;UBERON:0006858,4.73e-09,3;UBERON:0005911,9.98e-09,82;UBERON:0004807,1.70e-07,28;UBERON:0004913,1.80e-07,1;UBERON:0003703,1.80e-07,1;UBERON:0001174,1.80e-07,1;UBERON:0004914,1.80e-07,1;UBERON:0005157,2.04e-07,47;UBERON:0003133,2.85e-07,48;UBERON:0001242,2.89e-07,4;UBERON:0001262,2.89e-07,4;UBERON:0004786,2.89e-07,4;UBERON:0004808,2.89e-07,4;UBERON:0001277,2.89e-07,4;UBERON:0005156,3.24e-07,59;UBERON:0000990,3.24e-07,59;UBERON:0003101,7.72e-07,22;UBERON:0000079,7.72e-07,22 | |||
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| ||
|short_description=p2@SYCP2 | |short_description=p2@SYCP2 | ||
}} | }} |
Latest revision as of 08:10, 17 September 2015
Short description: | p2@SYCP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SYCP2_5end |
Coexpression cluster: | C2624_argyrophil_breast_bronchogenic_small_transitionalcell_epidermoid_gall |
Association with transcript: | 0bp_to_ENST00000446834_5end |
EntrezGene: | SYCP2 |
HGNC: | 11490 |
UniProt: | A2A341 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 2.53e-14 | 2 |
epithelial cell of lung | 2.67e-11 | 19 |
germ line cell | 1.03e-08 | 7 |
germ cell | 1.03e-08 | 7 |
epithelial cell | 1.41e-07 | 253 |
intestinal epithelial cell | 2.89e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 2.53e-14 | 2 |
cervix epithelium | 2.53e-14 | 2 |
testis | 1.67e-12 | 8 |
respiratory tract epithelium | 2.67e-11 | 19 |
lung epithelium | 2.67e-11 | 19 |
uterine cervix | 1.49e-10 | 6 |
neck of organ | 1.49e-10 | 6 |
epithelial bud | 9.89e-10 | 37 |
lung | 1.10e-09 | 22 |
respiratory tube | 1.10e-09 | 22 |
respiration organ | 1.10e-09 | 22 |
pair of lungs | 1.10e-09 | 22 |
lung primordium | 1.10e-09 | 22 |
lung bud | 1.10e-09 | 22 |
male reproductive organ | 3.92e-09 | 11 |
adrenal gland | 4.73e-09 | 3 |
adrenal cortex | 4.73e-09 | 3 |
adrenal/interrenal gland | 4.73e-09 | 3 |
endo-epithelium | 9.98e-09 | 82 |
respiratory system epithelium | 1.70e-07 | 28 |
hepatopancreatic ampulla | 1.80e-07 | 1 |
extrahepatic bile duct | 1.80e-07 | 1 |
common bile duct | 1.80e-07 | 1 |
duodenal papilla | 1.80e-07 | 1 |
epithelial fold | 2.04e-07 | 47 |
reproductive organ | 2.85e-07 | 48 |
intestinal mucosa | 2.89e-07 | 4 |
wall of intestine | 2.89e-07 | 4 |
gastrointestinal system mucosa | 2.89e-07 | 4 |
gastrointestinal system epithelium | 2.89e-07 | 4 |
intestinal epithelium | 2.89e-07 | 4 |
reproductive structure | 3.24e-07 | 59 |
reproductive system | 3.24e-07 | 59 |
male organism | 7.72e-07 | 22 |
male reproductive system | 7.72e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
bronchus cancer | 2.92e-22 | 7 |
bronchogenic carcinoma | 2.92e-22 | 7 |
carcinoma | 1.30e-19 | 106 |
lung carcinoma | 6.47e-17 | 9 |
cell type cancer | 7.25e-17 | 143 |
lung cancer | 1.89e-14 | 15 |
lung small cell carcinoma | 1.89e-14 | 4 |
respiratory system cancer | 1.62e-13 | 16 |
cervical cancer | 1.43e-12 | 5 |
cancer | 7.16e-12 | 235 |
disease of cellular proliferation | 1.60e-11 | 239 |
organ system cancer | 4.02e-11 | 137 |
adenocarcinoma | 1.85e-08 | 25 |
vascular disease | 8.84e-08 | 1 |
ischemia | 8.84e-08 | 1 |
extrinsic cardiomyopathy | 8.84e-08 | 1 |
myocardial ischemia | 8.84e-08 | 1 |
myocardial infarction | 8.84e-08 | 1 |
epithelioid sarcoma | 1.30e-07 | 1 |
thoracic cancer | 2.89e-07 | 4 |
breast cancer | 2.89e-07 | 4 |