FFCP PHASE1:Hg19::chr1:27320420..27320431,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:27320420..27320431,+
|short_description=p4@TRNP1
|description=CAGE_peak_4_at_TRNP1_5end
|association_with_transcript=-378bp_to_ENST00000531285_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=388610 | |EntrezGene=388610 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34348 | |HGNC=34348 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-378bp_to_ENST00000531285_5end | |||
|cluster_id=chr1:27320420..27320431,+ | |||
|description=CAGE_peak_4_at_TRNP1_5end | |||
|id=chr1:27320420..27320431,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.23e-11!180;CL:0002321!5.51e-10!248;CL:0000057!1.08e-09!75;CL:0000220!2.18e-09!246;CL:0000066!7.35e-09!254;CL:0000183!2.14e-07!59;CL:0002620!4.90e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002681;2.20e-08;12!CL:0002584;2.20e-08;12!CL:0002561;2.57e-07;2!CL:0002554;3.47e-07;2!CL:1000746;3.76e-07;7!CL:1000612;3.76e-07;7!CL:0000669;4.06e-07;4!CL:0000650;4.97e-07;2!CL:1000500;4.97e-07;2!CL:1000618;4.97e-07;2!CL:1001318;4.97e-07;2!CL:0002173;4.97e-07;2!CL:0002600;5.59e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002681,1.96e-08,12;CL:0002584,1.96e-08,12;CL:0002561,2.50e-07,2;CL:0000669,2.72e-07,4;CL:0002554,2.83e-07,2;CL:0002600,3.19e-07,2;CL:1000746,3.22e-07,7;CL:1000612,3.22e-07,7;CL:0000650,4.18e-07,2;CL:1000500,4.18e-07,2;CL:1000618,4.18e-07,2;CL:1001318,4.18e-07,2;CL:0002173,4.18e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.96e-13!365;UBERON:0005256!8.07e-12!143;UBERON:0002100!8.45e-11!216;UBERON:0003104!1.44e-10!238;UBERON:0009142!1.44e-10!238;UBERON:0000481!8.46e-10!347;UBERON:0006554!5.88e-09!44;UBERON:0009569!1.42e-08!113;UBERON:0003102!1.57e-08!95;UBERON:0001008!1.75e-08!45;UBERON:0002113!5.38e-08!27;UBERON:0003918!5.38e-08!27;UBERON:0005095!5.38e-08!27;UBERON:0007687!5.38e-08!27;UBERON:0002199!1.38e-07!45;UBERON:0002416!1.38e-07!45;UBERON:0000468!1.40e-07!659;UBERON:0000119!2.91e-07!312;UBERON:0005172!8.12e-07!55;UBERON:0005173!8.12e-07!55;UBERON:0002097!1.00e-06!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001225;2.20e-08;12!UBERON:0008987;2.20e-08;12!UBERON:0003891;1.58e-07;4!UBERON:0005933;2.57e-07;2!UBERON:0005942;2.57e-07;2!UBERON:0005932;2.57e-07;2!UBERON:0000074;3.76e-07;7!UBERON:0001229;3.76e-07;7!UBERON:0003567;4.97e-07;2!UBERON:0003838;4.97e-07;2!UBERON:0003586;4.97e-07;2!UBERON:0005169;4.97e-07;2!UBERON:0002321;4.97e-07;2!UBERON:0005215;4.97e-07;2!UBERON:0002303;4.97e-07;2!UBERON:0002319;4.97e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.28e-08,160;UBERON:0009142,1.28e-08,160;UBERON:0005256,1.53e-08,122;UBERON:0005177,1.88e-08,101;UBERON:0001225,1.96e-08,12;UBERON:0008987,1.96e-08,12;UBERON:0002100,4.33e-08,199;UBERON:0009569,6.75e-08,112;UBERON:0003891,1.39e-07,4;UBERON:0005933,2.50e-07,2;UBERON:0005942,2.50e-07,2;UBERON:0005932,2.50e-07,2;UBERON:0010532,3.22e-07,7;UBERON:0000074,3.22e-07,7;UBERON:0001229,3.22e-07,7;UBERON:0001230,3.22e-07,7;UBERON:0003220,3.22e-07,7;UBERON:0005749,3.22e-07,7;UBERON:0004199,3.22e-07,7;UBERON:0004209,3.22e-07,7;UBERON:0004198,3.22e-07,7;UBERON:0003567,4.18e-07,2;UBERON:0003838,4.18e-07,2;UBERON:0003586,4.18e-07,2;UBERON:0005169,4.18e-07,2;UBERON:0002321,4.18e-07,2;UBERON:0005215,4.18e-07,2;UBERON:0002303,4.18e-07,2;UBERON:0002319,4.18e-07,2 | |||
|phase1_expression=0.181678379270557,0.642301571672949,0.281908808191942,0,0,0,0,3.15859936713415,0.783556884599516,0.982935746006035,2.79120467188971,0,0,0.123766352960047,1.32558950291166,0,0,0,0.487932798790507,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0.306083892370903,0.320929027076094,0,0,0.199463657621632,0.426224750532694,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0.212604299965044,0,0.112328631146495,0,0,0.285012743741249,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0.144846518960824,0,0.486634870302636,0.0945348171640679,0.221729397462564,0.175669571386252,0.130979075497713,0.364295288292542,0,0.324547393654683,0,0,0,0,0,0.39752481473341,0,0,0,0,0,0,0.516833518338658,0.35576626268671,0.66944122552934,0,0.760272105718513,0.976248230192678,0,0,0.0892997282840798,0,0,0,0,0.366403487860815,0,0,0.872188104285069,0,0,0,0,0,0,0,0.24666754841716,0.311211035399766,0.269421344139376,0.163461903113459,0.605429710579726,0.576175924479999,1.17160715916898,3.74592092196385,2.2818872861778,7.17353666648645,0.822041490506354,0.647491777472526,0.561803226808994,0.204154171254893,0.491337269247072,0.413303124703062,0,0,2.73048408581408,3.59309070908119,0.336672227908132,0.500474079487857,2.21651292387346,0,0,0,0.567160915800105,0.538168907066586,0,0.423863802319124,1.80054657650641,0.412210116953756,0,0.18611685633159,1.35021065793013,0.68205903612839,0.504867548488229,0.644349290496095,0.484938170456436,0.355009592516614,0.806016785821122,1.01736355386293,0,0.272746120590835,0,0.975789649036763,1.06023814657188,0.929551542956147,0.518305275076852,0.756962552626885,0.36497735907583,0,0.643240938192885,0,2.3218396401599,7.94067429836544,0,0,0,0.110293972732394,0.217879444092406,0.237270619111097,0.134831308160164,0,0,0.738155454624648,0,1.2347220339942,2.94017422771084,0,0,0.590789906681404,0,2.09080345523293,0.171567810298526,0.548751427043128,0,0.301586917234893,0.0925884451585296,0.651616610620649,4.15973914111831,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0,0.806026704325635,0,0.766765358330422,0,0,0,0.144119953416961,0.25248486685276,0.126995788584338,0.381988425558278,0,0,0,0.600686115687835,0,1.45770409648969,0.43596006883328,2.12681028880755,0.129271715757778,7.15312891703765,0.845302752556,0,0,0.771622122786426,0,0.266422179016099,0.285955987316295,2.71310802695722,0,1.62868092146868,0,0,1.20575750823834,0,1.3996218765488,0,0,0,0.239624855491583,0,1.42636905040718,1.15825045334063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0.542530047399471,0,0.178428988797162,0,0,1.20378439891088,0,3.10419213877515,0,0.368738337083406,1.73767228936166,0.979005787313703,1.71571711905428,0,0,0,2.42502057157008,1.66435439510497,0.604780586659361,0.744323423456331,0.153461973288062,0.280660094433074,0,0,0.321707842287215,1.48418066444991,0.462629081407967,0.177561725313127,0.657017248110473,1.03850885836724,0.348631135379878,3.98836183652353,0.802025881213139,0.368323955743585,0.114814448164607,1.0925470080403,0.131124414959424,1.35359883872224,0.539107359730903,0.784349769176855,0,0.527758144464379,0,0.680374821106063,0.431831832204279,3.08454505380579,2.70946437543853,2.50844886927427,2.29388645740534,0.831076008928724,0.671624264166535,0,0,0.769350375349168,0.984043937099117,2.60302715731442,0,0,0,0.574265537996172,0.650060246036521,0,0.096670718292122,0.616194468458578,0.307007349452259,0.689182862422653,0.429680979473094,0.580066775656914,0.340906509664404,0.0890320356467374,0.661139661443912,0.384380134730212,0.255225424989168,0.10115778085555,0.464845549297286,0.31481234683064,0,0.308033580176089,0,0,0,0.143124886741991,1.116475108079,0.316379424718726,0.38126038784765,2.303080121802,0,0.636406495851874,0,0.179872457583315,0,0.117812402345686,0.404364963146632,1.58510321173008,0,0.975267478179181,0.487426979262569,1.05650146756755,0.272999822815972,0.282810863907425,0,1.65409603063837,0.66343897524122,0.438450885253763,8.10285747973363,1.9676842561399,0,0.30982349809975,0.281695602532241,0,0.294747123039363,0,0.709522128141196,0.422215270595328,0.329294892959902,0.75894634753143,0.349934720244983,0.192444225451024,0.670302275535787,1.08890984861323,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.640944426764839,1.92495971052672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0.390776190804081,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,0.47748896947538,0,0,0,0,0,0,0.211125408127993,0.398495976502139,0,1.25966373927138,0.20453736500431,0,0.311039587661807,0.179736702294654,0,0,0.295930216910801,0,0,0,0.463840490809256,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0.591095237907095,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0,1.68798451622422,0.652931232636591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| ||
|short_description=p4@TRNP1 | |||
}} | }} |
Latest revision as of 07:09, 17 September 2015
Short description: | p4@TRNP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRNP1_5end |
Coexpression cluster: | NA |
Association with transcript: | -378bp_to_ENST00000531285_5end |
EntrezGene: | TRNP1 |
HGNC: | 34348 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cortical cell | 1.96e-08 | 12 |
renal cortical epithelial cell | 1.96e-08 | 12 |
outer root sheath cell | 2.50e-07 | 2 |
pericyte cell | 2.72e-07 | 4 |
fibroblast of lymphatic vessel | 2.83e-07 | 2 |
smooth muscle cell of trachea | 3.19e-07 | 2 |
glomerular cell | 3.22e-07 | 7 |
kidney corpuscule cell | 3.22e-07 | 7 |
mesangial cell | 4.18e-07 | 2 |
kidney interstitial cell | 4.18e-07 | 2 |
juxtaglomerular complex cell | 4.18e-07 | 2 |
renal interstitial pericyte | 4.18e-07 | 2 |
extraglomerular mesangial cell | 4.18e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.28e-08 | 160 |
entire embryonic mesenchyme | 1.28e-08 | 160 |
trunk mesenchyme | 1.53e-08 | 122 |
trunk region element | 1.88e-08 | 101 |
cortex of kidney | 1.96e-08 | 12 |
renal parenchyma | 1.96e-08 | 12 |
trunk | 4.33e-08 | 199 |
subdivision of trunk | 6.75e-08 | 112 |
stroma | 1.39e-07 | 4 |
hair root sheath | 2.50e-07 | 2 |
hair outer root sheath | 2.50e-07 | 2 |
bulb of hair follicle | 2.50e-07 | 2 |
primitive nephron | 3.22e-07 | 7 |
renal glomerulus | 3.22e-07 | 7 |
renal corpuscle | 3.22e-07 | 7 |
glomerular capsule | 3.22e-07 | 7 |
metanephric mesenchyme | 3.22e-07 | 7 |
glomerular tuft | 3.22e-07 | 7 |
S-shaped body | 3.22e-07 | 7 |
renal vesicle | 3.22e-07 | 7 |
comma-shaped body | 3.22e-07 | 7 |
abdomen connective tissue | 4.18e-07 | 2 |
abdominal segment connective tissue | 4.18e-07 | 2 |
trunk connective tissue | 4.18e-07 | 2 |
interstitial tissue | 4.18e-07 | 2 |
extraglomerular mesangium | 4.18e-07 | 2 |
kidney interstitium | 4.18e-07 | 2 |
juxtaglomerular apparatus | 4.18e-07 | 2 |
mesangium | 4.18e-07 | 2 |