FFCP PHASE1:Hg19::chr11:2018875..2018886,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=4713 | |HGNC=4713 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=140bp_to_ENST00000422826_5end | |association_with_transcript=140bp_to_ENST00000422826_5end | ||
|cluster_id=chr11:2018875..2018886,- | |||
|coexpression_cluster_id=C227 | |||
|description=CAGE_peak_25_at_H19_5end | |description=CAGE_peak_25_at_H19_5end | ||
|id=chr11:2018875..2018886,- | |id=chr11:2018875..2018886,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000349;8.53e-17;19!CL:0002577;1.37e-09;3!CL:0002536;5.96e-07;2!CL:0002575;6.30e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,8.30e-17,19;CL:0002577,1.34e-09,3;CL:0002536,5.96e-07,2;CL:0002575,6.49e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.20e-09;29 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.90e-14!14;UBERON:0000158!2.90e-14!14;UBERON:0001557!4.15e-13!19;UBERON:0001737!2.31e-12!9;UBERON:0000478!4.54e-11!24;UBERON:0003124!1.44e-10!7;UBERON:0003104!7.50e-09!238;UBERON:0009142!7.50e-09!238;UBERON:0000077!5.89e-08!130;UBERON:0004923!1.06e-07!57;UBERON:0004119!1.07e-07!169;UBERON:0000925!1.07e-07!169;UBERON:0006595!1.07e-07!169;UBERON:0004921!3.46e-07!129;UBERON:0004185!3.46e-07!129;UBERON:0001007!3.84e-07!155;UBERON:0001555!3.84e-07!155;UBERON:0007026!3.84e-07!155;UBERON:0001041!5.14e-07!98;UBERON:0001987!7.00e-07!4;UBERON:0004340!7.00e-07!4;UBERON:0000481!9.43e-07!347 | |ontology_enrichment_uberon=UBERON:0005631!2.90e-14!14;UBERON:0000158!2.90e-14!14;UBERON:0001557!4.15e-13!19;UBERON:0001737!2.31e-12!9;UBERON:0000478!4.54e-11!24;UBERON:0003124!1.44e-10!7;UBERON:0003104!7.50e-09!238;UBERON:0009142!7.50e-09!238;UBERON:0000077!5.89e-08!130;UBERON:0004923!1.06e-07!57;UBERON:0004119!1.07e-07!169;UBERON:0000925!1.07e-07!169;UBERON:0006595!1.07e-07!169;UBERON:0004921!3.46e-07!129;UBERON:0004185!3.46e-07!129;UBERON:0001007!3.84e-07!155;UBERON:0001555!3.84e-07!155;UBERON:0007026!3.84e-07!155;UBERON:0001041!5.14e-07!98;UBERON:0001987!7.00e-07!4;UBERON:0004340!7.00e-07!4;UBERON:0000481!9.43e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.19e-22;9!UBERON:0001557;1.19e-22;9!UBERON:0000478;8.27e-18;24!UBERON:0005631;6.47e-14;10!UBERON:0000158;6.47e-14;10!UBERON:0001987;6.21e-12;4!UBERON:0001134;1.81e-11;16!UBERON:0002036;1.81e-11;16!UBERON:0000305;1.44e-10;7!UBERON:0001723;3.37e-09;3!UBERON:0001033;3.37e-09;3!UBERON:0000072;3.53e-07;37!UBERON:0005090;8.47e-07;2!UBERON:0001630;8.47e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.54e-23,14;UBERON:0000158,1.54e-23,14;UBERON:0001737,1.01e-22,9;UBERON:0001557,5.33e-18,19;UBERON:0000478,7.36e-18,24;UBERON:0003124,8.09e-15,7;UBERON:0001987,5.42e-12,4;UBERON:0004340,5.42e-12,4;UBERON:0000305,1.42e-10,7;UBERON:0000072,3.14e-09,47;UBERON:0001723,3.33e-09,3;UBERON:0001033,3.33e-09,3;UBERON:0010056,3.33e-09,3;UBERON:0004871,3.44e-09,8;UBERON:0004119,9.92e-08,160;UBERON:0000925,9.92e-08,160;UBERON:0006595,9.92e-08,160;UBERON:0000065,1.39e-07,54;UBERON:0001041,3.00e-07,87;UBERON:0005090,8.60e-07,2;UBERON:0001630,8.60e-07,2 | |||
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| ||
|short_description=p25@H19 | |short_description=p25@H19 | ||
}} | }} |
Latest revision as of 06:56, 17 September 2015
Short description: | p25@H19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_H19_5end |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | 140bp_to_ENST00000422826_5end |
EntrezGene: | NA |
HGNC: | 4713 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 8.30e-17 | 19 |
placental epithelial cell | 1.34e-09 | 3 |
amniotic epithelial cell | 5.96e-07 | 2 |
central nervous system pericyte | 6.49e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.54e-23 | 14 |
membranous layer | 1.54e-23 | 14 |
larynx | 1.01e-22 | 9 |
upper respiratory tract | 5.33e-18 | 19 |
extraembryonic structure | 7.36e-18 | 24 |
chorion | 8.09e-15 | 7 |
placenta | 5.42e-12 | 4 |
allantois | 5.42e-12 | 4 |
amnion | 1.42e-10 | 7 |
segment of respiratory tract | 3.14e-09 | 47 |
tongue | 3.33e-09 | 3 |
gustatory system | 3.33e-09 | 3 |
future tongue | 3.33e-09 | 3 |
somatic layer of lateral plate mesoderm | 3.44e-09 | 8 |
endoderm-derived structure | 9.92e-08 | 160 |
endoderm | 9.92e-08 | 160 |
presumptive endoderm | 9.92e-08 | 160 |
respiratory tract | 1.39e-07 | 54 |
foregut | 3.00e-07 | 87 |
muscle structure | 8.60e-07 | 2 |
muscle organ | 8.60e-07 | 2 |