FFCP PHASE1:Hg19::chr13:34392185..34392191,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:34392185..34392191,+ to FFCP PHASE1:Hg19::chr13:34392185..34392191,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5983 | |EntrezGene=5983 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9971 | |HGNC=9971 | ||
|TSSclassifier=strong | |||
|UniProt=P40938 | |UniProt=P40938 | ||
|association_with_transcript=0bp_to_ENST00000380071_5end | |||
|cluster_id=chr13:34392185..34392191,+ | |||
|description=CAGE_peak_5_at_RFC3_5end | |||
|id=chr13:34392185..34392191,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000764;5.15e-21;2!CL:0000558;5.15e-21;2!CL:0000306;3.26e-11;4!CL:0002222;3.26e-11;4!CL:0002224;3.26e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,6.96e-21,2;CL:0000765,6.96e-21,2;CL:0000050,6.96e-21,2;CL:0000038,6.96e-21,2;CL:0000558,6.96e-21,2;CL:0000547,6.96e-21,2;CL:0000549,6.96e-21,2;CL:0000550,6.96e-21,2;CL:0000552,6.96e-21,2;CL:0000306,3.42e-11,4;CL:0002222,3.42e-11,4;CL:0002224,3.42e-11,4 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.81e-40;1!UBERON:0006215;1.71e-14;3!UBERON:0003056;1.71e-14;3 | |||
|ontology_enrichment_disease=DOID:162!2.21e-08!235;DOID:14566!4.75e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:5409;2.53e-11;4!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.53e-11,4;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.81e-40;1!UBERON:0001785;1.81e-40;1!UBERON:0002464;1.81e-40;1!UBERON:0004904;1.81e-40;1!UBERON:0001021;1.81e-40;1!UBERON:0003714;5.15e-21;2!UBERON:0005162;5.15e-21;2!UBERON:0000122;5.15e-21;2!UBERON:0004732;3.43e-13;13!UBERON:0010077;3.26e-11;4!UBERON:0005389;3.26e-11;4!UBERON:0000484;3.26e-11;4!UBERON:0000965;3.26e-11;4!UBERON:0001803;3.26e-11;4!UBERON:0002104;1.48e-08;21!UBERON:0002037;6.55e-08;6!UBERON:0001032;1.31e-07;24!UBERON:0004456;1.31e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.48e-40,1;UBERON:0001785,1.48e-40,1;UBERON:0002464,1.48e-40,1;UBERON:0004904,1.48e-40,1;UBERON:0001021,1.48e-40,1;UBERON:0003902,1.48e-40,1;UBERON:0005425,1.48e-40,1;UBERON:0003714,4.66e-21,2;UBERON:0005162,4.66e-21,2;UBERON:0000122,4.66e-21,2;UBERON:0004732,3.03e-13,13;UBERON:0001781,3.10e-11,4;UBERON:0010077,3.42e-11,4;UBERON:0005389,3.42e-11,4;UBERON:0000484,3.42e-11,4;UBERON:0002546,3.42e-11,4;UBERON:0000965,3.42e-11,4;UBERON:0001803,3.42e-11,4;UBERON:0003073,3.42e-11,4;UBERON:0005426,3.42e-11,4;UBERON:0000019,6.17e-09,20;UBERON:0000047,6.17e-09,20;UBERON:0010312,6.17e-09,20;UBERON:0004088,6.17e-09,20;UBERON:0010230,6.17e-09,20;UBERON:0003072,6.17e-09,20;UBERON:0004128,6.17e-09,20;UBERON:0003071,6.17e-09,20;UBERON:0000970,1.48e-08,21;UBERON:0002104,1.48e-08,21;UBERON:0001456,3.27e-08,22;UBERON:0002037,5.92e-08,6;UBERON:0006215,5.92e-08,6;UBERON:0000966,6.34e-08,6;UBERON:0005388,6.34e-08,6;UBERON:0001802,6.34e-08,6;UBERON:0000020,1.31e-07,24;UBERON:0001032,1.31e-07,24;UBERON:0004456,1.31e-07,24 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.376627918784408,0.305653622991805,0.164201178899891,0.236132343941038,0,0,0,0,0,0,0.92960640696362,0.142169232487422,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0.368277635987565,0,0.211255286311942,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0.276350017785848,0,0.14828656316206,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,0,0,0,0.361439152384566,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.458426764241994,0,0,0,0,0,0,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0.352303495931295,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0.580969714347592,0.414644220061482,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0.505754070234305,0.482022059766964,0.330881918197182,0.217879444092406,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0.441463099414651,0,0,0.109750285408626,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0.190493682876507,0,0,0,0.205654985406647,0,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,1.09629938322967,0.261435451024901,0.256450125116389,0,0.325378394664303,0,0.27470839445503,0.330037999682352,0,0,0,0,0.462145851343933,0.307007349452259,0.275673144969061,0.107420244868274,0,0.170453254832202,0,0,0,0.127612712494584,0,0.464845549297286,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0.28853842595289,0.426851060090485,0,0.59873811429845,0.191505370132367,0.211673582723883,0,0,0,0.313359791546046,0,0,0,0.201799707191048,0.425846237690326,0,0.921722292925374,0,0,0.976940477010201,0.556812347790485,0,0,0,0,0,0.146508179271894,0,0.222886768554957,0,0,0.296964680832639,0.614321404198464,0,0,0,0.16480387422676,0.211125408127993,0,0.276283915531148,0,0,0.492339221844278,0,0.179736702294654,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.173624994933292,0,0,1.52581736317083,0.442317039724898,0.295547618953547,0,0,0,0,0.113942055847001,0.46112780877612,0,0.108647371922008,0,0.0915975934018623,0,0,0.156980256395025,0.166211681900156,0,0.392125068635479,0,0.189753732724185,0,0,0,0.141353071433941,0,0,0.0884575645033392,0,0,0.123563938946503,0.104421949505455,0.067401132980677,0,0.702793337176017,0.182454789215666,0.19566461893209,0,0,0,0,0.063186579628488,0.300646838828985,0.311064574191741,0.664653872707185,0,0,0,0.284609546029793,0.138674673013139,0,0.391969589657511,0,0,0.51595809741485,0.290268993867255,0.0730893170861856,0.246346371159628,0,0,0.225980740780532,0.137041924646751,0,0.0633107959558787,0.391102765469606,0,0,0,0,0,0,0,0.248505071130865,0,0,0.104602846312333,0.203996435272644,0.288950589901519,0,0.273810757783986,0,0,0,0,0.229160424011684,0,0,0.429226048136571,0,0.134366944973453,0,0,0,0.0824158583811665,0.0674035438541849,0.0984274815147488,0.338693328263138,0,0.136203406111576,0.321506296930038,0.137539436597234,0.415440338029185,0,0,0.121499113316049,0,0,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,1.19730191562487,0.246277562248017,0,0,0,0,0,0.39669780522807,0.171086837884329,0,0,0,0,0,0,0.243585196761792,0,0.544017803369474,0.2506898940227,0,0,0.157054096250234,0,0,0.1251909307065,0.573409195690071,0.110929051536852,0,0.553394539744923,0.124980407962107,0,0,0,0.468334905806882,0.28984205722165,0.149254802886874,0.233713309847224,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0.226705925512272,0,0.244736704506468,0,0,0,0,0,0,0.76872455576384,0.345430341731199,0.303859956177382,0.138258436151731,0,0,0.163565394255844,0,0,0,0,0.213383459388282,0,0,0,0,0,0.127894371303652,0.215649622793364,0,0,0,0,0,0,0,0.70975570501128,0.80057074828547,0,0,0.128458450192919,0,0,0,0,0,0.161475645631851,1.42769420259154,0,0.353909170043221,0,0.115525666150338,0,0,0.198916222116275,0.0752103283492573,0.20170506870352,0,0,0.163771917510097,0,0.0675375846183947,0,0,0.126831620387814,0.546974809018219,0,0,0.175871244359621,0,0,0.336283722218824,0,0,0,0.460935950223117,0.342976018874837,0,0.0657727735628491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| ||
|short_description=p5@RFC3 | |||
}} | }} |
Latest revision as of 04:51, 17 September 2015
Short description: | p5@RFC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RFC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000380071_5end |
EntrezGene: | RFC3 |
HGNC: | 9971 |
UniProt: | P40938 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 6.96e-21 | 2 |
erythroblast | 6.96e-21 | 2 |
megakaryocyte-erythroid progenitor cell | 6.96e-21 | 2 |
erythroid progenitor cell | 6.96e-21 | 2 |
reticulocyte | 6.96e-21 | 2 |
proerythroblast | 6.96e-21 | 2 |
basophilic erythroblast | 6.96e-21 | 2 |
polychromatophilic erythroblast | 6.96e-21 | 2 |
orthochromatic erythroblast | 6.96e-21 | 2 |
crystallin accumulating cell | 3.42e-11 | 4 |
vertebrate lens cell | 3.42e-11 | 4 |
lens epithelial cell | 3.42e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.53e-11 | 4 |
bronchus cancer | 5.08e-07 | 7 |
bronchogenic carcinoma | 5.08e-07 | 7 |