FFCP PHASE1:Hg19::chr11:1946100..1946117,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7140 | |EntrezGene=7140 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11950 | |HGNC=11950 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-30bp_to_ENST00000492075_5end | |association_with_transcript=-30bp_to_ENST00000492075_5end | ||
|cluster_id=chr11:1946100..1946117,+ | |||
|coexpression_cluster_id=C3127 | |coexpression_cluster_id=C3127 | ||
|description=CAGE_peak_3_at_TNNT3_5end | |description=CAGE_peak_3_at_TNNT3_5end | ||
|id=chr11:1946100..1946117,+ | |id=chr11:1946100..1946117,+ | ||
|ontology_enrichment_celltype=CL:0002541!1.34e-08!3;CL:0000349!1.48e-08!3;CL:0002577!1.48e-08!3 | |ontology_enrichment_celltype=CL:0002541!1.34e-08!3;CL:0000349!1.48e-08!3;CL:0002577!1.48e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.87e-41;19!CL:0002541;2.99e-18;3!CL:0002577;3.17e-18;3!CL:0002536;5.04e-12;2!CL:0002537;2.53e-11;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.40e-41,19;CL:0002541,2.59e-18,3;CL:0002577,3.27e-18,3;CL:0002536,3.70e-12,2;CL:0002537,2.53e-11,5;CL:1001319,9.51e-07,1;CL:1000600,9.51e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0000358;3.57e-07;1!UBERON:0003124;4.92e-07;1 | |||
|ontology_enrichment_disease=DOID:1749!2.91e-09!14 | |ontology_enrichment_disease=DOID:1749!2.91e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:1799;3.78e-07;1!DOID:10165;3.78e-07;1!DOID:1798;3.78e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,3.78e-07,1;DOID:10165,3.78e-07,1;DOID:1798,3.78e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.22e-24!14;UBERON:0000158!2.22e-24!14;UBERON:0000478!8.31e-18!24;UBERON:0003124!1.14e-17!7;UBERON:0000974!1.69e-13!10;UBERON:0004923!1.21e-11!57;UBERON:0001987!9.06e-11!4;UBERON:0004340!9.06e-11!4;UBERON:0003343!1.64e-09!4;UBERON:0004785!1.64e-09!4;UBERON:0000305!3.80e-09!7;UBERON:0006562!7.19e-09!11;UBERON:0000476!1.34e-08!3;UBERON:0000920!1.34e-08!3;UBERON:0000344!2.82e-08!12;UBERON:0004871!6.25e-08!8;UBERON:0000161!6.75e-08!35;UBERON:0003729!1.35e-07!5;UBERON:0001723!1.75e-07!3;UBERON:0001033!1.75e-07!3;UBERON:0010056!1.75e-07!3;UBERON:0001042!2.60e-07!10;UBERON:0009145!2.60e-07!10;UBERON:0006947!2.79e-07!3;UBERON:0004054!2.79e-07!3 | |ontology_enrichment_uberon=UBERON:0005631!2.22e-24!14;UBERON:0000158!2.22e-24!14;UBERON:0000478!8.31e-18!24;UBERON:0003124!1.14e-17!7;UBERON:0000974!1.69e-13!10;UBERON:0004923!1.21e-11!57;UBERON:0001987!9.06e-11!4;UBERON:0004340!9.06e-11!4;UBERON:0003343!1.64e-09!4;UBERON:0004785!1.64e-09!4;UBERON:0000305!3.80e-09!7;UBERON:0006562!7.19e-09!11;UBERON:0000476!1.34e-08!3;UBERON:0000920!1.34e-08!3;UBERON:0000344!2.82e-08!12;UBERON:0004871!6.25e-08!8;UBERON:0000161!6.75e-08!35;UBERON:0003729!1.35e-07!5;UBERON:0001723!1.75e-07!3;UBERON:0001033!1.75e-07!3;UBERON:0010056!1.75e-07!3;UBERON:0001042!2.60e-07!10;UBERON:0009145!2.60e-07!10;UBERON:0006947!2.79e-07!3;UBERON:0004054!2.79e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;3.09e-44;24!UBERON:0005631;5.70e-36;10!UBERON:0000158;5.70e-36;10!UBERON:0001987;1.55e-23;4!UBERON:0000305;1.66e-20;7!UBERON:0003124;2.99e-18;3!UBERON:0000920;2.99e-18;3!UBERON:0000341;5.04e-12;2!UBERON:0001255;6.67e-12;2!UBERON:0001556;6.67e-12;2!UBERON:0000974;9.57e-09;6!UBERON:0000077;4.82e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.40e-57,14;UBERON:0000158,2.40e-57,14;UBERON:0000478,2.50e-44,24;UBERON:0003124,5.21e-40,7;UBERON:0001987,1.74e-23,4;UBERON:0004340,1.74e-23,4;UBERON:0000305,1.33e-20,7;UBERON:0000920,2.59e-18,3;UBERON:0004871,5.28e-18,8;UBERON:0004923,4.48e-14,66;UBERON:0000341,4.39e-12,2;UBERON:0001255,6.14e-12,2;UBERON:0001556,6.14e-12,2;UBERON:0004645,9.51e-07,1;UBERON:0001256,9.51e-07,1;UBERON:0001259,9.51e-07,1 | |||
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| ||
|short_description=p3@TNNT3 | |short_description=p3@TNNT3 | ||
}} | }} |
Latest revision as of 04:49, 17 September 2015
Short description: | p3@TNNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TNNT3_5end |
Coexpression cluster: | C3127_amniotic_chorionic_rectal_Placental_squamous_umbilical_pancreatic |
Association with transcript: | -30bp_to_ENST00000492075_5end |
EntrezGene: | TNNT3 |
HGNC: | 11950 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.40e-41 | 19 |
chorionic membrane mesenchymal stem cell | 2.59e-18 | 3 |
placental epithelial cell | 3.27e-18 | 3 |
amniotic epithelial cell | 3.70e-12 | 2 |
amnion mesenchymal stem cell | 2.53e-11 | 5 |
bladder cell | 9.51e-07 | 1 |
lower urinary tract cell | 9.51e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.40e-57 | 14 |
membranous layer | 2.40e-57 | 14 |
extraembryonic structure | 2.50e-44 | 24 |
chorion | 5.21e-40 | 7 |
placenta | 1.74e-23 | 4 |
allantois | 1.74e-23 | 4 |
amnion | 1.33e-20 | 7 |
egg chorion | 2.59e-18 | 3 |
somatic layer of lateral plate mesoderm | 5.28e-18 | 8 |
organ component layer | 4.48e-14 | 66 |
throat | 4.39e-12 | 2 |
urinary bladder | 6.14e-12 | 2 |
lower urinary tract | 6.14e-12 | 2 |
urinary bladder urothelium | 9.51e-07 | 1 |
wall of urinary bladder | 9.51e-07 | 1 |
mucosa of urinary bladder | 9.51e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 3.78e-07 | 1 |
endocrine pancreas cancer | 3.78e-07 | 1 |
pancreatic endocrine carcinoma | 3.78e-07 | 1 |