FFCP PHASE1:Hg19::chr6:21666773..21666784,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401237 | |EntrezGene=401237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=28245 | |HGNC=28245 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=98bp_to_NR_015410,uc003ndj.2,uc011djj.1_5end | |association_with_transcript=98bp_to_NR_015410,uc003ndj.2,uc011djj.1_5end | ||
|cluster_id=chr6:21666773..21666784,+ | |||
|coexpression_cluster_id=C21 | |coexpression_cluster_id=C21 | ||
|description=CAGE_peak_10_at_LINC00340_5end | |description=CAGE_peak_10_at_LINC00340_5end | ||
|id=chr6:21666773..21666784,+ | |id=chr6:21666773..21666784,+ | ||
|ontology_enrichment_celltype=CL:0002139!5.60e-28!24;CL:0000115!8.58e-25!35;CL:0002078!1.88e-20!44;CL:0000071!7.60e-17!18;CL:0002546!7.60e-17!18;CL:0000213!4.90e-16!57;CL:0000215!4.90e-16!57;CL:0005020!7.92e-14!6;CL:0002138!7.92e-14!6;CL:0005022!7.92e-14!6;CL:1000413!1.85e-12!9;CL:0002544!2.66e-10!6 | |ontology_enrichment_celltype=CL:0002139!5.60e-28!24;CL:0000115!8.58e-25!35;CL:0002078!1.88e-20!44;CL:0000071!7.60e-17!18;CL:0002546!7.60e-17!18;CL:0000213!4.90e-16!57;CL:0000215!4.90e-16!57;CL:0005020!7.92e-14!6;CL:0002138!7.92e-14!6;CL:0005022!7.92e-14!6;CL:1000413!1.85e-12!9;CL:0002544!2.66e-10!6 | ||
|ontology_enrichment_celltype_v019=CL:1001319;1.03e-17;1!CL:1000600;1.03e-17;1!CL:0002543;6.70e-12;6!CL:0002139;2.96e-11;24!CL:0000115;1.33e-09;36!CL:0002262;1.57e-09;2!CL:1000398;1.57e-09;2!CL:0000071;8.08e-09;18 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,6.23e-18,1;CL:1000600,6.23e-18,1;CL:0002543,7.08e-12,6;CL:0000115,2.03e-11,36;CL:0002139,3.12e-11,24;CL:0002262,1.57e-09,2;CL:1000398,1.57e-09,2;CL:0002078,3.83e-09,45;CL:0000071,7.86e-09,18;CL:0002546,7.86e-09,18;CL:0000213,4.31e-07,58;CL:0000215,4.31e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002546;8.08e-09;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!7.60e-17!18;UBERON:0004638!7.60e-17!18;UBERON:0004852!7.60e-17!18;UBERON:0000055!3.76e-16!69;UBERON:0002049!1.18e-15!79;UBERON:0007798!1.18e-15!79;UBERON:0004535!2.29e-14!110;UBERON:0001009!9.48e-14!113;UBERON:0006914!2.66e-13!25;UBERON:0000487!3.12e-13!22;UBERON:0003915!1.85e-12!9;UBERON:0004700!1.85e-12!9;UBERON:0001917!1.85e-12!9;UBERON:0001981!1.28e-10!60;UBERON:0007500!1.28e-10!60;UBERON:0004537!1.28e-10!60;UBERON:0006965!1.28e-10!60;UBERON:0001473!3.62e-10!8;UBERON:0004536!3.62e-10!8;UBERON:0006558!3.62e-10!8;UBERON:0000477!1.63e-08!286;UBERON:0004111!2.01e-08!241;UBERON:0002465!5.68e-08!10;UBERON:0004872!8.49e-08!84;UBERON:0000468!2.02e-07!659;UBERON:0000483!6.70e-07!309 | |ontology_enrichment_uberon=UBERON:0001986!7.60e-17!18;UBERON:0004638!7.60e-17!18;UBERON:0004852!7.60e-17!18;UBERON:0000055!3.76e-16!69;UBERON:0002049!1.18e-15!79;UBERON:0007798!1.18e-15!79;UBERON:0004535!2.29e-14!110;UBERON:0001009!9.48e-14!113;UBERON:0006914!2.66e-13!25;UBERON:0000487!3.12e-13!22;UBERON:0003915!1.85e-12!9;UBERON:0004700!1.85e-12!9;UBERON:0001917!1.85e-12!9;UBERON:0001981!1.28e-10!60;UBERON:0007500!1.28e-10!60;UBERON:0004537!1.28e-10!60;UBERON:0006965!1.28e-10!60;UBERON:0001473!3.62e-10!8;UBERON:0004536!3.62e-10!8;UBERON:0006558!3.62e-10!8;UBERON:0000477!1.63e-08!286;UBERON:0004111!2.01e-08!241;UBERON:0002465!5.68e-08!10;UBERON:0004872!8.49e-08!84;UBERON:0000468!2.02e-07!659;UBERON:0000483!6.70e-07!309 | ||
|ontology_enrichment_uberon_v019=UBERON:0004645;1.03e-17;1!UBERON:0001256;1.03e-17;1!UBERON:0001259;1.03e-17;1!UBERON:0002331;8.23e-16;10!UBERON:0000178;9.44e-11;15!UBERON:0000179;9.44e-11;15!UBERON:0000463;9.44e-11;15!UBERON:0000922;2.23e-10;49!UBERON:0001255;1.57e-09;2!UBERON:0001281;1.57e-09;2!UBERON:0003497;1.57e-09;2!UBERON:0003909;1.57e-09;2!UBERON:0003835;1.57e-09;2!UBERON:0001556;1.57e-09;2!UBERON:0004638;8.08e-09;18!UBERON:0001986;8.08e-09;18!UBERON:0004852;8.08e-09;18!UBERON:0001638;3.07e-08;9!UBERON:0003920;3.07e-08;9!UBERON:0004582;3.07e-08;9!UBERON:0000487;2.58e-07;22!UBERON:0000478;6.35e-07;24!UBERON:0001280;9.11e-07;3!UBERON:0004647;9.11e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,6.23e-18,1;UBERON:0001256,6.23e-18,1;UBERON:0001259,6.23e-18,1;UBERON:0002331,7.83e-16,10;UBERON:0000358,7.83e-16,10;UBERON:0000307,7.83e-16,10;UBERON:0000091,7.83e-16,10;UBERON:0000087,7.83e-16,10;UBERON:0007010,7.83e-16,10;UBERON:0007806,7.83e-16,10;UBERON:0008780,7.83e-16,10;UBERON:0005728,7.83e-16,10;UBERON:0000178,9.14e-11,15;UBERON:0000179,9.14e-11,15;UBERON:0000463,9.14e-11,15;UBERON:0001255,1.22e-09,2;UBERON:0001556,1.22e-09,2;UBERON:0001281,1.57e-09,2;UBERON:0003497,1.57e-09,2;UBERON:0003909,1.57e-09,2;UBERON:0003835,1.57e-09,2;UBERON:0004535,3.76e-09,109;UBERON:0001009,6.87e-09,112;UBERON:0004638,7.86e-09,18;UBERON:0001986,7.86e-09,18;UBERON:0004852,7.86e-09,18;UBERON:0001638,3.18e-08,9;UBERON:0003920,3.18e-08,9;UBERON:0004582,3.18e-08,9;UBERON:0000487,2.52e-07,22;UBERON:0000478,6.22e-07,24;UBERON:0001280,9.12e-07,3;UBERON:0004647,9.12e-07,3;UBERON:0005171,9.12e-07,3 | |||
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| ||
|short_description=p10@LINC00340 | |short_description=p10@LINC00340 | ||
}} | }} |
Latest revision as of 04:10, 17 September 2015
Short description: | p10@LINC00340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LINC00340_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 98bp_to_NR_015410, uc003ndj.2, uc011djj.1_5end |
EntrezGene: | LINC00340 |
HGNC: | 28245 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 6.23e-18 | 1 |
lower urinary tract cell | 6.23e-18 | 1 |
vein endothelial cell | 7.08e-12 | 6 |
endothelial cell | 2.03e-11 | 36 |
endothelial cell of vascular tree | 3.12e-11 | 24 |
endothelial cell of sinusoid | 1.57e-09 | 2 |
endothelial cell of hepatic sinusoid | 1.57e-09 | 2 |
meso-epithelial cell | 3.83e-09 | 45 |
blood vessel endothelial cell | 7.86e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.86e-09 | 18 |
lining cell | 4.31e-07 | 58 |
barrier cell | 4.31e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 6.23e-18 | 1 |
wall of urinary bladder | 6.23e-18 | 1 |
mucosa of urinary bladder | 6.23e-18 | 1 |
umbilical cord | 7.83e-16 | 10 |
blastocyst | 7.83e-16 | 10 |
blastula | 7.83e-16 | 10 |
bilaminar disc | 7.83e-16 | 10 |
inner cell mass | 7.83e-16 | 10 |
cleaving embryo | 7.83e-16 | 10 |
connecting stalk | 7.83e-16 | 10 |
inner cell mass derived epiblast | 7.83e-16 | 10 |
extraembryonic mesoderm | 7.83e-16 | 10 |
blood | 9.14e-11 | 15 |
haemolymphatic fluid | 9.14e-11 | 15 |
organism substance | 9.14e-11 | 15 |
urinary bladder | 1.22e-09 | 2 |
lower urinary tract | 1.22e-09 | 2 |
hepatic sinusoid | 1.57e-09 | 2 |
abdomen blood vessel | 1.57e-09 | 2 |
sinusoid | 1.57e-09 | 2 |
abdominal segment blood vessel | 1.57e-09 | 2 |
cardiovascular system | 3.76e-09 | 109 |
circulatory system | 6.87e-09 | 112 |
blood vessel endothelium | 7.86e-09 | 18 |
endothelium | 7.86e-09 | 18 |
cardiovascular system endothelium | 7.86e-09 | 18 |
vein | 3.18e-08 | 9 |
venous blood vessel | 3.18e-08 | 9 |
venous system | 3.18e-08 | 9 |
simple squamous epithelium | 2.52e-07 | 22 |
extraembryonic structure | 6.22e-07 | 24 |
liver parenchyma | 9.12e-07 | 3 |
liver lobule | 9.12e-07 | 3 |
hepatic duct | 9.12e-07 | 3 |