FFCP PHASE1:Hg19::chr3:18486202..18486209,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9779 | |EntrezGene=9779 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19166 | |HGNC=19166 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=99bp_to_ENST00000414318_5end | |association_with_transcript=99bp_to_ENST00000414318_5end | ||
|cluster_id=chr3:18486202..18486209,- | |||
|coexpression_cluster_id=C712 | |coexpression_cluster_id=C712 | ||
|description=CAGE_peak_5_at_TBC1D5_5end | |description=CAGE_peak_5_at_TBC1D5_5end | ||
|id=chr3:18486202..18486209,- | |id=chr3:18486202..18486209,- | ||
|ontology_enrichment_celltype=CL:0000037!1.14e-37!172;CL:0000566!1.14e-37!172;CL:0000988!3.19e-35!182;CL:0000738!1.01e-34!140;CL:0002087!1.97e-33!119;CL:0002032!3.35e-32!165;CL:0000837!3.35e-32!165;CL:0002031!2.36e-28!124;CL:0000084!6.36e-23!25;CL:0000827!6.36e-23!25;CL:0000838!4.51e-21!52;CL:0000542!1.78e-20!53;CL:0000051!1.78e-20!53;CL:0000791!2.13e-19!18;CL:0000789!2.13e-19!18;CL:0002420!2.13e-19!18;CL:0002419!2.13e-19!18;CL:0000790!2.13e-19!18;CL:0000763!2.77e-13!112;CL:0000049!2.77e-13!112;CL:0000766!1.44e-12!76;CL:0002057!2.64e-12!42;CL:0000860!4.86e-11!45;CL:0000625!5.33e-11!11;CL:0002194!6.37e-11!63;CL:0000576!6.37e-11!63;CL:0000040!6.37e-11!63;CL:0000559!6.37e-11!63;CL:0000557!8.48e-11!71;CL:0002009!2.40e-10!65;CL:0000839!5.33e-10!70;CL:0000624!1.92e-09!6;CL:0000134!3.62e-07!358 | |ontology_enrichment_celltype=CL:0000037!1.14e-37!172;CL:0000566!1.14e-37!172;CL:0000988!3.19e-35!182;CL:0000738!1.01e-34!140;CL:0002087!1.97e-33!119;CL:0002032!3.35e-32!165;CL:0000837!3.35e-32!165;CL:0002031!2.36e-28!124;CL:0000084!6.36e-23!25;CL:0000827!6.36e-23!25;CL:0000838!4.51e-21!52;CL:0000542!1.78e-20!53;CL:0000051!1.78e-20!53;CL:0000791!2.13e-19!18;CL:0000789!2.13e-19!18;CL:0002420!2.13e-19!18;CL:0002419!2.13e-19!18;CL:0000790!2.13e-19!18;CL:0000763!2.77e-13!112;CL:0000049!2.77e-13!112;CL:0000766!1.44e-12!76;CL:0002057!2.64e-12!42;CL:0000860!4.86e-11!45;CL:0000625!5.33e-11!11;CL:0002194!6.37e-11!63;CL:0000576!6.37e-11!63;CL:0000040!6.37e-11!63;CL:0000559!6.37e-11!63;CL:0000557!8.48e-11!71;CL:0002009!2.40e-10!65;CL:0000839!5.33e-10!70;CL:0000624!1.92e-09!6;CL:0000134!3.62e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000084;2.31e-22;25!CL:0000791;4.45e-17;18!CL:0000789;4.45e-17;18!CL:0002419;4.45e-17;18!CL:0000226;4.62e-16;3!CL:0000842;4.62e-16;3!CL:0000625;1.28e-11;11!CL:0000542;1.31e-10;53!CL:0000094;3.55e-10;8!CL:0000624;3.52e-08;6!CL:0000775;1.02e-07;3!CL:0000767;1.80e-07;3!CL:0000623;1.80e-07;3!CL:0000081;2.01e-07;11!CL:0002032;7.68e-07;1!CL:0000557;7.68e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.13e-22,25;CL:0000827,2.13e-22,25;CL:0000791,4.38e-17,18;CL:0000789,4.38e-17,18;CL:0002420,4.38e-17,18;CL:0002419,4.38e-17,18;CL:0000790,4.38e-17,18;CL:0000838,5.34e-16,52;CL:0000226,5.41e-16,3;CL:0000842,5.41e-16,3;CL:0000542,1.22e-15,53;CL:0000051,1.22e-15,53;CL:0000738,2.18e-14,136;CL:0000037,3.43e-13,168;CL:0000988,3.01e-12,177;CL:0000625,1.28e-11,11;CL:0000094,2.41e-10,8;CL:0002087,4.34e-10,115;CL:0002032,4.78e-09,161;CL:0000837,4.78e-09,161;CL:0000624,3.44e-08,6;CL:0000775,7.04e-08,3;CL:0000081,1.52e-07,11;CL:0000767,1.53e-07,3;CL:0000623,1.58e-07,3;CL:0000825,1.58e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;4.45e-17;18!CL:0000051;1.31e-10;53 | |||
|ontology_enrichment_disease=DOID:2531!4.03e-09!51;DOID:0060083!4.03e-09!51;DOID:1240!4.43e-07!39 | |ontology_enrichment_disease=DOID:2531!4.03e-09!51;DOID:0060083!4.03e-09!51;DOID:1240!4.43e-07!39 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.84e-15!102;UBERON:0003061!2.84e-15!102;UBERON:0002193!1.54e-14!112;UBERON:0002371!1.81e-09!80;UBERON:0001474!3.10e-08!86;UBERON:0002405!3.19e-08!115;UBERON:0002370!7.65e-07!4;UBERON:0005058!7.65e-07!4;UBERON:0009113!7.65e-07!4;UBERON:0003295!7.65e-07!4;UBERON:0005562!7.65e-07!4 | |ontology_enrichment_uberon=UBERON:0002390!2.84e-15!102;UBERON:0003061!2.84e-15!102;UBERON:0002193!1.54e-14!112;UBERON:0002371!1.81e-09!80;UBERON:0001474!3.10e-08!86;UBERON:0002405!3.19e-08!115;UBERON:0002370!7.65e-07!4;UBERON:0005058!7.65e-07!4;UBERON:0009113!7.65e-07!4;UBERON:0003295!7.65e-07!4;UBERON:0005562!7.65e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.08e-12;2!UBERON:0005058;6.08e-12;2!UBERON:0009113;6.08e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.01e-12,4;UBERON:0005058,2.01e-12,4;UBERON:0009113,2.01e-12,4;UBERON:0003295,2.01e-12,4;UBERON:0005562,2.01e-12,4;UBERON:0003351,1.99e-08,6;UBERON:0004177,2.79e-07,7;UBERON:0005057,2.79e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,0,1.23852898652861,0,0,0,0.0774672005803016,0,0.587200878669695,0,0.200544447470142,0.217010870715852,0,0,0.515151135268373,0.581592955118259,0.377875943688809,0.242584061187816,0.697287110717054,0.411167888021826,0.309706370895104,0.28769239232215,0.256160706529101,0,0.689491361473237,0,0,0.564727018627814,0.272906150057846,0,1.83650335422542,0.641858054152187,0,0.329851300186716,0.199463657621632,0,0.290209238628584,0,0.622822248995575,0,0,0,0.605399502633369,0.736555271975129,0,0.211255286311942,0,0,0,0,0.32145117339416,0.285012743741249,0,0,1.75996244461323,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0.587237189370939,0.764546456250458,1.32171328579026,0,0,4.13090517239049,0.786021525498329,1.43921049299656,1.33749196312542,0.651844533267181,0,0,1.11410456885174,0.294605907474837,0.664601683750863,0.270803863765016,1.0247305578054,0.260118695119756,1.31550323682941,1.38175008892924,2.31842468588042,2.07601188426885,2.67540828089713,3.1360657141493,2.37949619664889,1.14966148080576,0.68725489096526,1.01207876807801,2.22995790026868,2.60433381542567,0,0.451725357233318,0.76791966692651,0,0.947109008176067,0.821127996921047,2.21767417547206,1.33720097891754,2.75166367377318,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09024169590255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,1.97030760201927,0.431255149719035,1.02674429023799,0,0,0,0,0,1.49801404789436,2.99161459204025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89475236572042,2.15714200818617,1.17400313583789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.952927101831156,0.822724546172388,0,0,0.79312517629427,0,0,0,0,0,1.42283686696828,0.318852545457645,0.399158742865633,0,0,0.649243880549111,0.842391534340376,1.14117339516596,0,0,0.169291777801603,0.1605880751037,0.201799707191048,0,0,0.614481528616916,0.671028323677248,0.667396566847634,0.976940477010201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0.156980256395025,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0.611030144933625,0,0.123563938946503,0,0,0,0,0.182454789215666,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10986352267889,0,0.262887354279314,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0.121792598380896,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59989916683944,0.853533837553127,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0.552032215008773,0,0,0,0.0642292250964595,0,0,0.205116364240755,0.252071696221718,0.414943514785307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197318320688547,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45178432815584,0,0.150962843566674,0,0.218559560503957,0,0,0,0,0,0.4226557275834,0,0,0.322289439867886,0,0,0,0,0,0,0,0.157771562193185,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.714193294391221,5.61923515573253,3.78655757204733,0,0,0,0,0,0.606168477131288,0,0.332660356546013,0,0,0,0,0,0,0,0,1.00636896795513,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,0,1.23852898652861,0,0,0,0.0774672005803016,0,0.587200878669695,0,0.200544447470142,0.217010870715852,0,0,0.515151135268373,0.581592955118259,0.377875943688809,0.242584061187816,0.697287110717054,0.411167888021826,0.309706370895104,0.28769239232215,0.256160706529101,0,0.689491361473237,0,0,0.564727018627814,0.272906150057846,0,1.83650335422542,0.641858054152187,0,0.329851300186716,0.199463657621632,0,0.290209238628584,0,0.622822248995575,0,0,0,0.605399502633369,0.736555271975129,0,0.211255286311942,0,0,0,0,0.32145117339416,0.285012743741249,0,0,1.75996244461323,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0.587237189370939,0.764546456250458,1.32171328579026,0,0,4.13090517239049,0.786021525498329,1.43921049299656,1.33749196312542,0.651844533267181,0,0,1.11410456885174,0.294605907474837,0.664601683750863,0.270803863765016,1.0247305578054,0.260118695119756,1.31550323682941,1.38175008892924,2.31842468588042,2.07601188426885,2.67540828089713,3.1360657141493,2.37949619664889,1.14966148080576,0.68725489096526,1.01207876807801,2.22995790026868,2.60433381542567,0,0.451725357233318,0.76791966692651,0,0.947109008176067,0.821127996921047,2.21767417547206,1.33720097891754,2.75166367377318,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09024169590255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,1.97030760201927,0.431255149719035,1.02674429023799,0,0,0,0,0,1.49801404789436,2.99161459204025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89475236572042,2.15714200818617,1.17400313583789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.952927101831156,0.822724546172388,0,0,0.79312517629427,0,0,0,0,0,1.42283686696828,0.318852545457645,0.399158742865633,0,0,0.649243880549111,0.842391534340376,1.14117339516596,0,0,0.169291777801603,0.1605880751037,0.201799707191048,0,0,0.614481528616916,0.671028323677248,0.667396566847634,0.976940477010201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0.156980256395025,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0.611030144933625,0,0.123563938946503,0,0,0,0,0.182454789215666,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10986352267889,0,0.262887354279314,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0.121792598380896,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59989916683944,0.853533837553127,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0.552032215008773,0,0,0,0.0642292250964595,0,0,0.205116364240755,0.252071696221718,0.414943514785307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197318320688547,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45178432815584,0,0.150962843566674,0,0.218559560503957,0,0,0,0,0,0.4226557275834,0,0,0.322289439867886,0,0,0,0,0,0,0,0.157771562193185,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.714193294391221,5.61923515573253,3.78655757204733,0,0,0,0,0,0.606168477131288,0,0.332660356546013,0,0,0,0,0,0,0,0,1.00636896795513,0 | ||
|short_description=p5@TBC1D5 | |short_description=p5@TBC1D5 | ||
}} | }} |
Latest revision as of 03:16, 17 September 2015
Short description: | p5@TBC1D5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TBC1D5_5end |
Coexpression cluster: | C712_thymus_biphenotypic_CD4_non_granulocyte_merkel_acute |
Association with transcript: | 99bp_to_ENST00000414318_5end |
EntrezGene: | TBC1D5 |
HGNC: | 19166 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.13e-22 | 25 |
pro-T cell | 2.13e-22 | 25 |
mature alpha-beta T cell | 4.38e-17 | 18 |
alpha-beta T cell | 4.38e-17 | 18 |
immature T cell | 4.38e-17 | 18 |
mature T cell | 4.38e-17 | 18 |
immature alpha-beta T cell | 4.38e-17 | 18 |
lymphoid lineage restricted progenitor cell | 5.34e-16 | 52 |
single nucleate cell | 5.41e-16 | 3 |
mononuclear cell | 5.41e-16 | 3 |
lymphocyte | 1.22e-15 | 53 |
common lymphoid progenitor | 1.22e-15 | 53 |
leukocyte | 2.18e-14 | 136 |
hematopoietic stem cell | 3.43e-13 | 168 |
hematopoietic cell | 3.01e-12 | 177 |
CD8-positive, alpha-beta T cell | 1.28e-11 | 11 |
granulocyte | 2.41e-10 | 8 |
nongranular leukocyte | 4.34e-10 | 115 |
hematopoietic oligopotent progenitor cell | 4.78e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.78e-09 | 161 |
CD4-positive, alpha-beta T cell | 3.44e-08 | 6 |
neutrophil | 7.04e-08 | 3 |
blood cell | 1.52e-07 | 11 |
basophil | 1.53e-07 | 3 |
natural killer cell | 1.58e-07 | 3 |
pro-NK cell | 1.58e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.01e-12 | 4 |
hemolymphoid system gland | 2.01e-12 | 4 |
thymic region | 2.01e-12 | 4 |
pharyngeal gland | 2.01e-12 | 4 |
thymus primordium | 2.01e-12 | 4 |
pharyngeal epithelium | 1.99e-08 | 6 |
hemopoietic organ | 2.79e-07 | 7 |
immune organ | 2.79e-07 | 7 |