FFCP PHASE1:Hg19::chr3:18480260..18480269,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6304 | |EntrezGene=6304 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10541 | |HGNC=10541 | ||
|TSSclassifier=strong | |||
|UniProt=Q01826 | |UniProt=Q01826 | ||
|association_with_transcript=0bp_to_ENST00000454909,NM_001131010_5end | |association_with_transcript=0bp_to_ENST00000454909,NM_001131010_5end | ||
|cluster_id=chr3:18480260..18480269,- | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_25_at_SATB1_5end | |description=CAGE_peak_25_at_SATB1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000084!2.91e-12!25;CL:0000827!2.91e-12!25;CL:0000838!7.55e-11!52;CL:0000791!1.13e-10!18;CL:0000789!1.13e-10!18;CL:0002420!1.13e-10!18;CL:0002419!1.13e-10!18;CL:0000790!1.13e-10!18;CL:0000542!1.36e-10!53;CL:0000051!1.36e-10!53;CL:0000625!1.89e-09!11 | |ontology_enrichment_celltype=CL:0000084!2.91e-12!25;CL:0000827!2.91e-12!25;CL:0000838!7.55e-11!52;CL:0000791!1.13e-10!18;CL:0000789!1.13e-10!18;CL:0002420!1.13e-10!18;CL:0002419!1.13e-10!18;CL:0000790!1.13e-10!18;CL:0000542!1.36e-10!53;CL:0000051!1.36e-10!53;CL:0000625!1.89e-09!11 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!6.15e-11!4;UBERON:0005058!6.15e-11!4;UBERON:0009113!6.15e-11!4;UBERON:0003295!6.15e-11!4;UBERON:0005562!6.15e-11!4;UBERON:0004177!2.37e-10!7;UBERON:0003351!2.04e-07!6;UBERON:0000974!2.54e-07!10 | |ontology_enrichment_uberon=UBERON:0002370!6.15e-11!4;UBERON:0005058!6.15e-11!4;UBERON:0009113!6.15e-11!4;UBERON:0003295!6.15e-11!4;UBERON:0005562!6.15e-11!4;UBERON:0004177!2.37e-10!7;UBERON:0003351!2.04e-07!6;UBERON:0000974!2.54e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.13e-57;2!UBERON:0005058;1.13e-57;2!UBERON:0009113;1.13e-57;2!UBERON:0004177;8.09e-24;5!UBERON:0005057;8.09e-24;5 | |ontology_enrichment_uberon_v019=UBERON:0002370;1.13e-57;2!UBERON:0005058;1.13e-57;2!UBERON:0009113;1.13e-57;2!UBERON:0004177;8.09e-24;5!UBERON:0005057;8.09e-24;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.78e-29,4;UBERON:0005058,1.78e-29,4;UBERON:0009113,1.78e-29,4;UBERON:0003295,1.78e-29,4;UBERON:0005562,1.78e-29,4;UBERON:0003351,4.86e-20,6;UBERON:0004177,2.46e-17,7;UBERON:0005057,2.46e-17,7;UBERON:0000974,1.89e-12,10;UBERON:0003408,1.89e-12,10;UBERON:0001042,1.89e-12,10;UBERON:0009145,1.89e-12,10;UBERON:0006562,2.07e-11,11;UBERON:0009722,2.07e-11,11;UBERON:0007690,2.07e-11,11;UBERON:0008814,2.44e-07,18;UBERON:0001557,5.34e-07,19 | |||
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| ||
|short_description=p25@SATB1 | |short_description=p25@SATB1 | ||
}} | }} |
Latest revision as of 03:14, 17 September 2015
Short description: | p25@SATB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_SATB1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000454909, NM_001131010_5end |
EntrezGene: | SATB1 |
HGNC: | 10541 |
UniProt: | Q01826 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 1.78e-29 | 4 |
hemolymphoid system gland | 1.78e-29 | 4 |
thymic region | 1.78e-29 | 4 |
pharyngeal gland | 1.78e-29 | 4 |
thymus primordium | 1.78e-29 | 4 |
pharyngeal epithelium | 4.86e-20 | 6 |
hemopoietic organ | 2.46e-17 | 7 |
immune organ | 2.46e-17 | 7 |
neck | 1.89e-12 | 10 |
gland of gut | 1.89e-12 | 10 |
chordate pharynx | 1.89e-12 | 10 |
pharyngeal region of foregut | 1.89e-12 | 10 |
pharynx | 2.07e-11 | 11 |
entire pharyngeal arch endoderm | 2.07e-11 | 11 |
early pharyngeal endoderm | 2.07e-11 | 11 |
pharyngeal arch system | 2.44e-07 | 18 |
upper respiratory tract | 5.34e-07 | 19 |