FFCP PHASE1:Hg19::chr3:18480151..18480162,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6304 | |EntrezGene=6304 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10541 | |HGNC=10541 | ||
|TSSclassifier=strong | |||
|UniProt=C9JLL5 | |UniProt=C9JLL5 | ||
|association_with_transcript=21bp_to_ENST00000414509_5end | |association_with_transcript=21bp_to_ENST00000414509_5end | ||
|cluster_id=chr3:18480151..18480162,- | |||
|coexpression_cluster_id=C712 | |||
|description=CAGE_peak_18_at_SATB1_5end | |description=CAGE_peak_18_at_SATB1_5end | ||
|id=chr3:18480151..18480162,- | |id=chr3:18480151..18480162,- | ||
|ontology_enrichment_celltype=CL:0000838!2.85e-18!52;CL:0000791!6.25e-18!18;CL:0000789!6.25e-18!18;CL:0002420!6.25e-18!18;CL:0002419!6.25e-18!18;CL:0000790!6.25e-18!18;CL:0000542!8.25e-18!53;CL:0000051!8.25e-18!53;CL:0000084!4.41e-17!25;CL:0000827!4.41e-17!25;CL:0000624!6.00e-16!6;CL:0002087!4.17e-13!119;CL:0000738!1.43e-12!140;CL:0000037!2.23e-09!172;CL:0000566!2.23e-09!172;CL:0002031!2.54e-09!124;CL:0000623!7.75e-09!3;CL:0000825!7.75e-09!3;CL:0000842!8.16e-09!3;CL:0000898!1.59e-08!3;CL:0000988!2.15e-08!182;CL:0002032!8.53e-08!165;CL:0000837!8.53e-08!165;CL:0000625!2.11e-07!11 | |ontology_enrichment_celltype=CL:0000838!2.85e-18!52;CL:0000791!6.25e-18!18;CL:0000789!6.25e-18!18;CL:0002420!6.25e-18!18;CL:0002419!6.25e-18!18;CL:0000790!6.25e-18!18;CL:0000542!8.25e-18!53;CL:0000051!8.25e-18!53;CL:0000084!4.41e-17!25;CL:0000827!4.41e-17!25;CL:0000624!6.00e-16!6;CL:0002087!4.17e-13!119;CL:0000738!1.43e-12!140;CL:0000037!2.23e-09!172;CL:0000566!2.23e-09!172;CL:0002031!2.54e-09!124;CL:0000623!7.75e-09!3;CL:0000825!7.75e-09!3;CL:0000842!8.16e-09!3;CL:0000898!1.59e-08!3;CL:0000988!2.15e-08!182;CL:0002032!8.53e-08!165;CL:0000837!8.53e-08!165;CL:0000625!2.11e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000624;2.12e-17;6!CL:0000226;1.77e-15;3!CL:0000842;1.77e-15;3!CL:0000084;4.58e-11;25!CL:0000542;6.97e-08;53!CL:0000815;5.41e-07;2!CL:0000792;5.41e-07;2!CL:0002677;5.41e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.90e-17,6;CL:0000226,2.05e-15,3;CL:0000842,2.05e-15,3;CL:0000084,4.25e-11,25;CL:0000827,4.25e-11,25;CL:0000838,8.27e-10,52;CL:0000542,1.30e-09,53;CL:0000051,1.30e-09,53;CL:0002087,3.77e-08,115;CL:0000815,5.41e-07,2;CL:0000792,5.41e-07,2;CL:0002677,5.41e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000051;6.97e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;3.08e-12;1!DOID:0060061;3.08e-12;1!DOID:8691;3.08e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,2.46e-12,1;DOID:0060061,2.46e-12,1;DOID:8691,2.46e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0001950!5.32e-14!20;UBERON:0002619!1.53e-12!22;UBERON:0001869!4.55e-11!32;UBERON:0000956!8.82e-11!25;UBERON:0000203!8.82e-11!25;UBERON:0000200!1.80e-10!6;UBERON:0001893!3.00e-10!34;UBERON:0002780!2.59e-09!41;UBERON:0001890!2.59e-09!41;UBERON:0006240!2.59e-09!41;UBERON:0003080!5.13e-09!42;UBERON:0002791!5.46e-09!33;UBERON:0002020!1.19e-08!34;UBERON:0003528!1.19e-08!34;UBERON:0002771!4.45e-08!3;UBERON:0001871!1.13e-07!7;UBERON:0002370!5.31e-07!4;UBERON:0005058!5.31e-07!4;UBERON:0009113!5.31e-07!4;UBERON:0003295!5.31e-07!4;UBERON:0005562!5.31e-07!4;UBERON:0001049!8.63e-07!57;UBERON:0005068!8.63e-07!57;UBERON:0006241!8.63e-07!57;UBERON:0007135!8.63e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.37e-24;2!UBERON:0005058;6.37e-24;2!UBERON:0009113;6.37e-24;2!UBERON:0004177;3.80e-10;5!UBERON:0005057;3.80e-10;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.86e-12,4;UBERON:0005058,1.86e-12,4;UBERON:0009113,1.86e-12,4;UBERON:0003295,1.86e-12,4;UBERON:0005562,1.86e-12,4;UBERON:0003351,1.34e-08,6;UBERON:0004177,1.72e-07,7;UBERON:0005057,1.72e-07,7 | |||
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| ||
|short_description=p18@SATB1 | |short_description=p18@SATB1 | ||
}} | }} |
Latest revision as of 03:11, 17 September 2015
Short description: | p18@SATB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_SATB1_5end |
Coexpression cluster: | C712_thymus_biphenotypic_CD4_non_granulocyte_merkel_acute |
Association with transcript: | 21bp_to_ENST00000414509_5end |
EntrezGene: | SATB1 |
HGNC: | 10541 |
UniProt: | C9JLL5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.90e-17 | 6 |
single nucleate cell | 2.05e-15 | 3 |
mononuclear cell | 2.05e-15 | 3 |
T cell | 4.25e-11 | 25 |
pro-T cell | 4.25e-11 | 25 |
lymphoid lineage restricted progenitor cell | 8.27e-10 | 52 |
lymphocyte | 1.30e-09 | 53 |
common lymphoid progenitor | 1.30e-09 | 53 |
nongranular leukocyte | 3.77e-08 | 115 |
regulatory T cell | 5.41e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.41e-07 | 2 |
naive regulatory T cell | 5.41e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.86e-12 | 4 |
hemolymphoid system gland | 1.86e-12 | 4 |
thymic region | 1.86e-12 | 4 |
pharyngeal gland | 1.86e-12 | 4 |
thymus primordium | 1.86e-12 | 4 |
pharyngeal epithelium | 1.34e-08 | 6 |
hemopoietic organ | 1.72e-07 | 7 |
immune organ | 1.72e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 2.46e-12 | 1 |
cutaneous T cell lymphoma | 2.46e-12 | 1 |
mycosis fungoides | 2.46e-12 | 1 |